Rmu_sc0009221.1_g000005

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009221.1
OG0010558
Physical Location & Seq
Forward (+)
18770 .. 19586
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009221.1_g000005.1.cds

Sequence Viewer

Length: 519 bp
atgtcgggtcagttggttccggtagccgtgacgttgaagccggcaatcccttttcacggcggccggagagctttctccgtggtgtcccggaatctgaatactccatcttcatcgaagttgcaactaccaaatatcccatcctcccaaacgcgacctctgctttcttcttcttcttcttcttcttcttcttcttcctctgtaactgctccgtccgtccaagtcgtcaaagctctgcggattcgacccagtcccgaattgggccttgcctctctcctcttcgtcctctccacggcttttgctgcacttttctcccttgctatattttccattccaactatcaatgctttgagaaaattggcaacttcagtggacaagctatcccatgtggtctccgaggaggtacctggaactctgctttctctgaaactctctggccttgaggtcaatgatttaaccaaacagcttaccggtatcaggaaaatggtgtccgcagctcggtgggggaagaattcaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.09

Weight (kDa)

11.53

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 400
AccII CGCG 1 cut(s) 151
AciI CCGC 3 cut(s) 60, 235, 489
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 5 cut(s) 56, 257, 289, 474, 495
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 2 cut(s) 37, 513
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 5 cut(s) 71, 230, 376, 463, 494
AluI AGCT 5 cut(s) 71, 230, 376, 463, 494
Alw26I GTCTC 1 cut(s) 394
AoxI GGCC 3 cut(s) 61, 259, 433
ApeKI GCWGC 2 cut(s) 299, 491
ApoI RAATTY 1 cut(s) 508
AsiGI ACCGGT 1 cut(s) 467
Asp718I GGTACC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 88
BanI GGYRCC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 286, 503
BccI CCATC 2 cut(s) 112, 145
BceAI ACGGC 3 cut(s) 11, 73, 306
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 394
BisI GCNGC 3 cut(s) 61, 300, 492
BlsI GCNGC 3 cut(s) 62, 301, 493
Bme1390I CCNGG 2 cut(s) 88, 405
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 18, 402
BmrFI CCNGG 2 cut(s) 88, 405
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 78, 288, 393
BsaWI WCCGGW 2 cut(s) 19, 467
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 257, 289, 474, 495
Bse118I RCCGGY 2 cut(s) 40, 467
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 78, 288, 393
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 5 cut(s) 56, 257, 289, 474, 495
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 263, 410
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 286, 503
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 3 cut(s) 63, 261, 435
BshNI GGYRCC 1 cut(s) 400
BshTI ACCGGT 1 cut(s) 467
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 5 cut(s) 20, 41, 64, 88, 468
BslFI GGGAC 2 cut(s) 70, 234
BslI CCNNNNNNNGG 5 cut(s) 56, 257, 289, 474, 495
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 70, 234
BsnI GGCC 3 cut(s) 63, 261, 435
Bso31I GGTCTC 1 cut(s) 394
BspACI CCGC 3 cut(s) 60, 235, 489
BspANI GGCC 3 cut(s) 63, 261, 435
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 18, 402
BspT107I GGYRCC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 394
BsrFI RCCGGY 2 cut(s) 40, 467
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 2 cut(s) 40, 467
BssECI CCNNGG 3 cut(s) 78, 288, 393
Bst2UI CCWGG 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 42
BstDSI CCRYGG 2 cut(s) 78, 288
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 394
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 157, 299
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 86, 403
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 286, 503
BstZI CGGCCG 1 cut(s) 61
BsuRI GGCC 3 cut(s) 63, 261, 435
BtgI CCRYGG 2 cut(s) 78, 288
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 42
Cfr10I RCCGGY 2 cut(s) 40, 467
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 401
CspAI ACCGGT 1 cut(s) 467
CspCI CAANNNNNGTGG 4 cut(s) 277, 312, 348, 383
CviAII CATG 1 cut(s) 383
CviQI GTAC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 61
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EclXI CGGCCG 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 386
FaiI YATR 2 cut(s) 320, 384
FaqI GGGAC 2 cut(s) 70, 234
FatI CATG 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 61, 300, 492
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 3 cut(s) 61, 300, 492
GluI GCNGC 3 cut(s) 61, 300, 492
HaeIII GGCC 3 cut(s) 63, 261, 435
HapII CCGG 5 cut(s) 20, 41, 64, 88, 468
Hin1II CATG 1 cut(s) 386
HinfI GANTC 2 cut(s) 91, 238
HpaII CCGG 5 cut(s) 20, 41, 64, 88, 468
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 96, 394, 423
Hpy188III TCNNGA 2 cut(s) 251, 475
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 121, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 299
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 386
KpnI GGTACC 1 cut(s) 404
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 286, 503
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 28, 199
MluCI AATT 3 cut(s) 254, 353, 508
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 9 cut(s) 151, 165, 205, 277, 284, 293, 388, 391, 433
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 1 cut(s) 452
MspI CCGG 5 cut(s) 20, 41, 64, 88, 468
MspR9I CCNGG 2 cut(s) 88, 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 157, 299
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 18, 402
NmuCI GTSAC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 91, 238
PflFI GACNNNGTC 1 cut(s) 246
PfoI TCCNGGA 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 3 cut(s) 62, 301, 493
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 18, 402
PspPI GGNCC 1 cut(s) 259
PsyI GACNNNGTC 1 cut(s) 246
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 3 cut(s) 61, 300, 492
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 88, 405
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 3 cut(s) 254, 353, 508
SsiI CCGC 3 cut(s) 60, 235, 489
StyD4I CCNGG 2 cut(s) 86, 403
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 113, 241
TasI AATT 3 cut(s) 254, 353, 508
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 91, 238
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 299, 491
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 3 cut(s) 67, 198, 202
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 246
XapI RAATTY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.