Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010558

Physical Location & Seq

Genomic Coordinates Reverse (-)

14507220 .. 14507979

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCGGGTCAGTTGGTTCAAGTAGCCGCGACGTTGAAGCCGGCAATCCCTTTTCACGGCTGCCGGAGAGATTTCTCAGTCGTGTCTCGGAATCTGAATACTTCATCTTTATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAACACAACCCCTGCTTTCTTCTTCTTCCTCTGTAACTTCTCCGTCCGTACAACTCCTCAGGGCACTGCGGATTCAACCCACACCCGAATTGGGCCTTGCCTCTCTCCTCTTCGTCCTCTTCACGGCTTTTGCTGCACTTTTCTCCCTTGCTATGTTTTCCATTCCAACTATCAATGCTTTGAGAAAATTAGCAACTTCAGTGGACAAGCTATCCCATGTGGTCTCCCAGGAGGTACCTGGAACTCTGCTTTCTCTGAAACTCTCTGGCATTGAGGTCAATGATTTAACCAAACAGCTTACCAGTATCAGGAAAATGATTTCTGCAACTGGCTGGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.67

Weight (kDa)

10.75

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g21731 FvH4_4g21731 FvH4_4g21731
malus_domestica	MD13G1137900.v1.1 MD16G1133700.v1.1
pyrus_communis	pycom13g12000 pycom16g11810
rosa_chinensis	RchiOBHm_Chr4g0427931 RchiOBHm_Chr4g0427961
rosa_laevigata	RLG00000007197 RLG00000007199
rosa_multiflora	Rmu_sc0000066.1_g000010 Rmu_sc0000066.1_g000012 Rmu_sc0009221.1_g000005
rosa_roxburghii	Rroxscaffold_5G00369600
rosa_rugosa	Rorug04G0220600
rosa_samantha	Rh4AG277800 Rh4AG278000 Rh4CG299000 Rh4CG299200
rosa_wichuraiana	Rw4G024130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	27, 214
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	195, 381
AfiI	CCNNNNNNNGG	4 cut(s)	56, 236, 268, 453
AgsI	TTSAA	4 cut(s)	20, 37, 221, 492
AjnI	CCWGG	2 cut(s)	372, 382
AluBI	AGCT	2 cut(s)	355, 442
AluI	AGCT	2 cut(s)	355, 442
Alw26I	GTCTC	2 cut(s)	90, 373
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	60, 278
ApoI	RAATTY	1 cut(s)	487
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	47, 265
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	2 cut(s)	73, 285
BciT130I	CCWGG	2 cut(s)	374, 384
BcoDI	GTCTC	2 cut(s)	90, 373
BisI	GCNGC	3 cut(s)	27, 61, 279
BlsI	GCNGC	3 cut(s)	28, 62, 280
Bme1390I	CCNGG	2 cut(s)	374, 384
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	2 cut(s)	374, 384
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 236, 268, 453
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	447, 478
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	374, 384
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	56, 236, 268, 453
BseMII	CTCAG	2 cut(s)	90, 217
BseNI	ACTGG	2 cut(s)	447, 478
BseRI	GAGGAG	2 cut(s)	191, 242
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	47, 265
BseYI	CCCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	41, 64
BslI	CCNNNNNNNGG	4 cut(s)	56, 236, 268, 453
BsmAI	GTCTC	2 cut(s)	90, 373
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	2 cut(s)	27, 214
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	89, 216
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	447, 478
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	374, 384
Bst6I	CTCTTC	2 cut(s)	260, 269
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	76, 203
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	90, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	374, 384
BstSCI	CCNGG	2 cut(s)	372, 382
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	47, 265
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 351
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	194, 380
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	8 cut(s)	26, 40, 60, 240, 272, 355, 442, 477
CviKI_1	RGCY	8 cut(s)	26, 40, 60, 240, 272, 355, 442, 477
CviQI	GTAC	2 cut(s)	194, 380
DdeI	CTNAG	2 cut(s)	76, 203
Eam1104I	CTCTTC	2 cut(s)	260, 269
EarI	CTCTTC	2 cut(s)	260, 269
Eco31I	GGTCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	372, 382
FaeI	CATG	1 cut(s)	365
FaiI	YATR	2 cut(s)	299, 363
FatI	CATG	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	27, 61, 279
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	27, 61, 279
GluI	GCNGC	3 cut(s)	27, 61, 279
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	41, 64
Hin1II	CATG	1 cut(s)	365
HinfI	GANTC	2 cut(s)	91, 217
HpaII	CCGG	2 cut(s)	41, 64
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	90, 96, 402
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	121, 281, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	76, 203
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	365
KpnI	GGTACC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	47, 265
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	6 cut(s)	156, 159, 162, 247, 256, 496
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	3 cut(s)	233, 332, 487
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	8 cut(s)	151, 184, 212, 256, 263, 272, 370, 412
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	431
MspI	CCGG	2 cut(s)	41, 64
MspR9I	CCNGG	2 cut(s)	374, 384
MvaI	CCWGG	2 cut(s)	374, 384
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	278
NaeI	GCCGGC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	91, 217
PkrI	GCNGC	3 cut(s)	28, 62, 280
Psp6I	CCWGG	2 cut(s)	372, 382
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	2 cut(s)	372, 382
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	238
RsaI	GTAC	2 cut(s)	195, 381
RsaNI	GTAC	2 cut(s)	194, 380
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	3 cut(s)	27, 61, 279
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	374, 384
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	6 cut(s)	35, 357, 381, 385, 423, 444
Sse9I	AATT	3 cut(s)	233, 332, 487
SsiI	CCGC	2 cut(s)	27, 214
StyD4I	CCNGG	2 cut(s)	372, 382
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	113
TasI	AATT	3 cut(s)	233, 332, 487
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	91, 217
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	2 cut(s)	216, 351
TseI	GCWGC	2 cut(s)	60, 278
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	2 cut(s)	177, 181
TspRI	CASTG	2 cut(s)	216, 351
XapI	RAATTY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.