Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Reverse (-)

26744392 .. 26745708

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAAGATTGACGTAGAAGTAATCTCCCAAGAAACAGTAACACCCTCATCTCCAACCCCTCACCATCTCCGCCATCACCAGCTCTCCTTTCTCGACCAGTTAGCTCCACACGCCTACGTCCCTTTCCTCTACTTCTACTCCCTCCCCAACACTCACAGCCACACCCAAATCTCCACCCACCTCAAGAAATCTCTCTCCAAAGCCTTAACACAGTACTACCCTCTAGCCGGCCGAGTCAAACTCAACCTCTTTGTGGAGTGCAACGACTTTGGAGTCCCCTTCTATGAAGCTCGAGTCAAATCCCTGTCACTCTCTGATGTCATCACCAATCCCTCCCTTCCTGAACTGAACAACTTGTTGCCCTTCAAGCTCGACGAGCTCAAAGACATAGCTCTTGGAGTTCAACTCAATCTGTTTCGTTGCGGAGGAGTTGCTATTGGGTTGTGTGCTTCGCATCGAGTTGCAGATGGGTTGTCATATTTCACGTTTGTTAAGAACTGGGCATCAGCTGCTTGTGGGAATGAGAGTGTGAGTCCGGATTTTTCGGCAGCTTCGATCTTCCCTCCAAAGAATATGGATGGGTATAATGGTGTTCTTATTCCGAAAAGGAATGAAATCGTGACCAAAGGGTTTGTGTTTGATGGGTTGAAGATTGAAGCTTTACGATCAAAGTATGCAGAGGGCATTAGATTGAAGACCAAGAAAATCCCGTCTCGAGTTGAGGCATTGTCTGCTTTCTTGTGGAACAAGTTTATGGCTGCGGCAGCAAAAGAAGAAGGATCAAGTTCCAGAAAGTTGTACGCAGTTGTGTATATTATGGATCTTCGTTCGAGATTTGACCCACCTCTGCCGCAGCATAGCTTTGGGAACTATTACCGGGCAGCCACTGCAACTCCAACATTGGTTAATGGGGAGGAGAGAGGTGGCCTTGTGAGGCAGGTGATAGAGGAAATAGAGAAGATTGACAATAAGTATATGAGGAAATTTCAAGATGGCTATAAGGAACATTTGGATTTCATGAGGAGAAGAATGGAGAGGGCTGCAAAAGGAGAGCTGGTTACGCTAACGTTTTCAAGTCTGTGCAGGTTTCCATTGTATGAGGCTGATTTTGGTTGGGGGAAGCCAGAATGGGTGAGCATGGCTTCCATGAAAATCAATAACCAAATTGTTTTCATGGACACCAAATTGGGTGATGGAATAGAGTCATATTTTAGCTTCAAGGAGGAAGACATGGCCAAGTTTGAACTTGACTCGGAGTTCCTCCAGCTGATTTCTCCAATTGGTAATGTCAAGAAAAATCCATTTGCACGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

439

Amino Acids

49.56

Weight (kDa)

8.82

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 420	1e-81	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	928
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	2 cut(s)	928, 1074
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	4 cut(s)	70, 423, 761, 851
AclI	AACGTT	1 cut(s)	1067
AclWI	GGATC	2 cut(s)	787, 828
AcoI	YGGCCR	2 cut(s)	229, 1233
AcsI	RAATTY	1 cut(s)	983
AfaI	GTAC	2 cut(s)	215, 800
AfiI	CCNNNNNNNGG	2 cut(s)	227, 253
AgsI	TTSAA	9 cut(s)	367, 404, 649, 656, 694, 989, 1074, 1219, 1244
AjiI	CACGTC	1 cut(s)	1310
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	787, 828
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	2 cut(s)	291, 714
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	3 cut(s)	229, 925, 1233
ApeKI	GCWGC	7 cut(s)	509, 548, 758, 764, 853, 881, 1040
ApoI	RAATTY	1 cut(s)	983
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	6 cut(s)	53, 68, 316, 952, 1144, 1202
AvaI	CYCGRG	2 cut(s)	291, 714
BalI	TGGCCA	1 cut(s)	1235
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	701, 1233
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	7 cut(s)	496, 560, 745, 776, 865, 893, 1027
BccI	CCATC	7 cut(s)	72, 81, 461, 572, 635, 986, 1187
BcnI	CCSGG	1 cut(s)	878
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	1 cut(s)	224
BfuAI	ACCTGC	2 cut(s)	928, 1074
BisI	GCNGC	9 cut(s)	510, 549, 759, 762, 765, 851, 854, 882, 1041
BlsI	GCNGC	9 cut(s)	511, 550, 760, 763, 766, 852, 855, 883, 1042
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	878
BmeT110I	CYCGRG	2 cut(s)	291, 714
BmgBI	CACGTC	1 cut(s)	1310
BmrFI	CCNGG	1 cut(s)	878
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	2 cut(s)	463, 512
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	701, 1233
BplI	GAGNNNNNCTC	4 cut(s)	225, 257, 390, 422
BpmI	CTGGAG	1 cut(s)	1247
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	878
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	8 cut(s)	68, 98, 122, 152, 877, 907, 1041, 1071
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 253
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	97, 503
BseAI	TCCGGA	1 cut(s)	535
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	2 cut(s)	227, 253
BseNI	ACTGG	2 cut(s)	97, 503
BseRI	GAGGAG	3 cut(s)	441, 929, 1036
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	7 cut(s)	496, 560, 745, 776, 865, 893, 1027
BsgI	GTGCAG	1 cut(s)	1102
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	231, 927, 1235
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	2 cut(s)	291, 714
BsiSI	CCGG	3 cut(s)	228, 536, 877
BslFI	GGGAC	2 cut(s)	104, 260
BslI	CCNNNNNNNGG	2 cut(s)	227, 253
BsmAI	GTCTC	1 cut(s)	717
BsmBI	CGTCTC	1 cut(s)	717
BsmFI	GGGAC	2 cut(s)	104, 260
BsnI	GGCC	3 cut(s)	231, 927, 1235
BsoBI	CYCGRG	2 cut(s)	291, 714
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	555, 665, 779, 820
BspACI	CCGC	4 cut(s)	70, 423, 761, 851
BspANI	GGCC	3 cut(s)	231, 927, 1235
BspEI	TCCGGA	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	1017
BspMI	ACCTGC	2 cut(s)	928, 1074
BspPI	GGATC	2 cut(s)	787, 828
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	97, 503
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	4 cut(s)	555, 665, 779, 820
Bst4CI	ACNGT	2 cut(s)	37, 213
BstAPI	GCANNNNNTGC	3 cut(s)	509, 731, 887
BstC8I	GCNNGC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	4 cut(s)	558, 668, 782, 823
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	555, 665, 779, 820
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 367, 376, 509, 731, 764, 887, 1060
BstSCI	CCNGG	1 cut(s)	876
BstV1I	GCAGC	7 cut(s)	496, 560, 745, 776, 865, 893, 1027
BstV2I	GAAGAC	2 cut(s)	701, 1233
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	231, 927, 1235
BtrI	CACGTC	1 cut(s)	1310
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	1 cut(s)	885
BveI	ACCTGC	2 cut(s)	928, 1074
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	887
CciI	TCATGA	1 cut(s)	1017
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	214, 799
CviAII	CATG	5 cut(s)	1018, 1138, 1147, 1174, 1231
CviQI	GTAC	2 cut(s)	214, 799
DpnI	GATC	4 cut(s)	557, 667, 781, 822
DpnII	GATC	4 cut(s)	555, 665, 779, 820
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	229, 1233
EagI	CGGCCG	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	379
Eco88I	CYCGRG	2 cut(s)	291, 714
EcoICRI	GAGCTC	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	717
FaeI	CATG	5 cut(s)	1021, 1141, 1150, 1177, 1234
FaqI	GGGAC	2 cut(s)	104, 260
FatI	CATG	5 cut(s)	1017, 1137, 1146, 1173, 1230
Fnu4HI	GCNGC	9 cut(s)	510, 549, 759, 762, 765, 851, 854, 882, 1041
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	9 cut(s)	510, 549, 759, 762, 765, 851, 854, 882, 1041
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	9 cut(s)	510, 549, 759, 762, 765, 851, 854, 882, 1041
GsuI	CTGGAG	1 cut(s)	1247
HaeIII	GGCC	3 cut(s)	231, 927, 1235
HapII	CCGG	3 cut(s)	228, 536, 877
Hin1II	CATG	5 cut(s)	1021, 1141, 1150, 1177, 1234
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	6 cut(s)	234, 273, 294, 532, 1202, 1250
HpaII	CCGG	3 cut(s)	228, 536, 877
HphI	GGTGA	6 cut(s)	53, 68, 316, 952, 1144, 1202
Hpy188I	TCNGA	3 cut(s)	316, 603, 1255
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	4 cut(s)	289, 347, 373, 770
HpyCH4III	ACNGT	2 cut(s)	37, 213
HpyCH4IV	ACGT	5 cut(s)	12, 117, 485, 1067, 1309
HpyCH4V	TGCA	7 cut(s)	261, 464, 677, 890, 1043, 1083, 1307
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 367, 376, 509, 731, 764, 887, 1060
HpySE526I	ACGT	5 cut(s)	12, 117, 485, 1067, 1309
Hsp92II	CATG	5 cut(s)	1021, 1141, 1150, 1177, 1234
Kpn2I	TCCGGA	1 cut(s)	535
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	555, 665, 779, 820
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	7 cut(s)	496, 560, 745, 776, 865, 893, 1027
LweI	GCATC	2 cut(s)	463, 512
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	5 cut(s)	12, 117, 485, 1067, 1309
MaeIII	GTNAC	4 cut(s)	37, 306, 619, 1057
MalI	GATC	4 cut(s)	557, 667, 781, 822
MboI	GATC	4 cut(s)	555, 665, 779, 820
MboII	GAAGA	9 cut(s)	16, 550, 661, 706, 785, 815, 970, 1038, 1238
MfeI	CAATTG	1 cut(s)	1278
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	1235
MluCI	AATT	4 cut(s)	983, 1164, 1184, 1278
MluNI	TGGCCA	1 cut(s)	1235
MlyI	GAGTC	6 cut(s)	243, 282, 303, 541, 1211, 1244
MmeI	TCCRAC	2 cut(s)	77, 920
Mox20I	TGGCCA	1 cut(s)	1235
MroI	TCCGGA	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	1235
MseI	TTAA	4 cut(s)	206, 492, 906, 1315
Msp20I	TGGCCA	1 cut(s)	1235
MspA1I	CMGCKG	2 cut(s)	509, 1267
MspI	CCGG	3 cut(s)	228, 536, 877
MspR9I	CCNGG	1 cut(s)	878
MunI	CAATTG	1 cut(s)	1278
MwoI	GCNNNNNNNGC	8 cut(s)	110, 367, 376, 509, 731, 764, 887, 1060
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	878
NdeII	GATC	4 cut(s)	555, 665, 779, 820
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	5 cut(s)	1021, 1141, 1150, 1177, 1234
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	306, 619
PaeR7I	CTCGAG	2 cut(s)	291, 714
PagI	TCATGA	1 cut(s)	1017
PaqCI	CACCTGC	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdiI	GCCGGC	1 cut(s)	229
PkrI	GCNGC	9 cut(s)	511, 550, 760, 763, 766, 852, 855, 883, 1042
PleI	GAGTC	6 cut(s)	242, 281, 302, 540, 1210, 1244
PpsI	GAGTC	6 cut(s)	242, 281, 302, 540, 1210, 1244
Psp124BI	GAGCTC	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	1067
PspXI	VCTCGAGB	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	2 cut(s)	509, 1267
RsaI	GTAC	2 cut(s)	215, 800
RsaNI	GTAC	2 cut(s)	214, 799
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	206, 492, 906, 1315
SatI	GCNGC	9 cut(s)	510, 549, 759, 762, 765, 851, 854, 882, 1041
Sau3AI	GATC	4 cut(s)	555, 665, 779, 820
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	6 cut(s)	243, 282, 303, 541, 1211, 1244
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	463, 512
Sfr274I	CTCGAG	2 cut(s)	291, 714
SlaI	CTCGAG	2 cut(s)	291, 714
SmlI	CTYRAG	3 cut(s)	182, 291, 714
SmoI	CTYRAG	3 cut(s)	182, 291, 714
Sse9I	AATT	4 cut(s)	983, 1164, 1184, 1278
SsiI	CCGC	4 cut(s)	70, 423, 761, 851
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	876
TaaI	ACNGT	2 cut(s)	37, 213
TaiI	ACGT	5 cut(s)	15, 120, 488, 1070, 1312
TaqI	TCGA	7 cut(s)	93, 292, 372, 457, 554, 715, 830
TasI	AATT	4 cut(s)	983, 1164, 1184, 1278
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	764, 853
Tru1I	TTAA	4 cut(s)	206, 492, 906, 1315
Tru9I	TTAA	4 cut(s)	206, 492, 906, 1315
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	2 cut(s)	306, 619
TseI	GCWGC	7 cut(s)	509, 548, 758, 764, 853, 881, 1040
Tsp45I	GTSAC	2 cut(s)	306, 619
TspDTI	ATGAA	6 cut(s)	17, 300, 627, 1006, 1162, 1163
TspRI	CASTG	1 cut(s)	892
XapI	RAATTY	1 cut(s)	983
XhoI	CTCGAG	2 cut(s)	291, 714
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.