Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Forward (+)

10234363 .. 10235765

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAGGATGAAGATAGAAGTCGAAGTAATCTCCCAAGATACCATAAAACCTTCATCTCCCACCCCTCCCCATCTCCGCCGTCACCAGCTCTCCTTTCTCGACCAGTTGGCTCCCCACACCTACATCTCTTTCCTCTACTTCTACTCCCTCCCCAACACCCACAACCACACCCAAATCTCCACCCACCTCAAGACGTCTCTCTCCAAAACCCTGACCCAGTACTACCCACTAGCCGGCCGAGTCAAGTTCAACCTCTTCCAAGCTCGAGTCAAATCCCACTCCCTCTCTGATGCCATCACCAATCCCTCCCTCTCCGAATTGACCAACTTGTTGCCTTTCAAGCCCGACGAGGTCACAGATATAGCTCTCGGAGTTCAACTCAATCTGTTTCCGTGTGGAGGAATTGCTATTGGGTTGTGCATTTCGCATCGAGTTGCAGATGCCTTGTCTTATTTCACGTTTGTTAGGAACTGGGCATCAACTGCTGCTTGTGGAAGTGCCTTTGTGGATGTGGACTTCTCGGCAGCTTCTATTTTCCCTCCAAAGAATATGGATGGGTATAACGGCGTTCCTATTCCGAAAAAGAATGACATTGTGAGCAAGAGGTTTGTGTTTGATGGGTCGAAGATCAAAGCTTTACGAGCAAAGTATGCGGAGAGCATCAGACTGAAGACCAAGAAACCGCCGTCTCGCGTTGAGGCATTGTCTGCATTCTTGTGGAACAGGTTTTTGGCCGCGGCTAGAAAAGAAGAAGAATCAAGAAGTTTGAGAAGGCTGTACACGGTTGTGTATGTTATGGATCTTCGTTCGAGGTTCGACCCACCTCTGCCGCAGAATAGATTTGGGAACTATTACCGGGCAGCCACTGCAACTCCAATATTGGTTGATGGGGAGGAGATTGGTGGTCTTGTGAGGCAGGTGATTGAGGAAATAGAGAACATTGACAATAAGTATATGAGGAAATTTCAAGAGGGCTATAAGGAACATTTTGATTTCCTGAGGAGAAGGATGGAAAGGGCTGCAAAAGGAGAGCTGGTTACACTAACGTTTTCGAGTGTTCGCAGGTTTCCAATTTATGAGGCTGATTTTGGTTTGGGGAAGCCCGCATGGGTGAACATGGCTTCCATGAGAATCAGCAACCAGATAATTTTCATGGACACCAAAATGGGTGATGGAATAGAGTCATATTTTAACTTCAAAGAGGAAGACATAGCCAAGTTCGAGCTTGATTCAGAGTTCCTCGAGTTGATTTCTCCAATTGGTAATGTCAAGCAAAATCCATTTGCACGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

431

Amino Acids

49.16

Weight (kDa)

9.35

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 413	3.1e-68	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	907
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	907, 1053
AccII	CGCG	2 cut(s)	693, 737
AciI	CCGC	7 cut(s)	76, 653, 683, 735, 737, 830, 1104
AclI	AACGTT	1 cut(s)	1046
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	2 cut(s)	235, 732
AcsI	RAATTY	1 cut(s)	962
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	221, 779
AfiI	CCNNNNNNNGG	2 cut(s)	233, 398
AgsI	TTSAA	5 cut(s)	250, 340, 377, 968, 1198
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AleI	CACNNNNGTG	1 cut(s)	785
AloI	GAACNNNNNNTCC	2 cut(s)	1106, 1138
AluBI	AGCT	7 cut(s)	88, 263, 365, 527, 635, 1033, 1225
AluI	AGCT	7 cut(s)	88, 263, 365, 527, 635, 1033, 1225
Alw26I	GTCTC	2 cut(s)	201, 693
AlwI	GGATC	1 cut(s)	807
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	2 cut(s)	264, 1241
AoxI	GGCC	2 cut(s)	235, 732
ApeKI	GCWGC	4 cut(s)	485, 524, 860, 1019
ApoI	RAATTY	1 cut(s)	962
AsuC2I	CCSGG	1 cut(s)	857
AsuHPI	GGTGA	5 cut(s)	74, 289, 931, 1123, 1181
AvaI	CYCGRG	2 cut(s)	264, 1241
AxyI	CCTNAGG	1 cut(s)	998
BbsI	GAAGAC	2 cut(s)	677, 1212
BbvI	GCAGC	4 cut(s)	472, 536, 872, 1006
BccI	CCATC	7 cut(s)	78, 302, 548, 611, 881, 1003, 1166
BceAI	ACGGC	3 cut(s)	63, 580, 670
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	2 cut(s)	201, 693
BfaI	CTAG	2 cut(s)	230, 741
BfuAI	ACCTGC	2 cut(s)	907, 1053
BisI	GCNGC	7 cut(s)	486, 525, 735, 738, 830, 861, 1020
BlsI	GCNGC	7 cut(s)	487, 526, 736, 739, 831, 862, 1021
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	857
BmeT110I	CYCGRG	2 cut(s)	264, 1241
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	857
BmrI	ACTGGG	2 cut(s)	211, 481
BmsI	GCATC	5 cut(s)	280, 430, 436, 485, 669
BmuI	ACTGGG	2 cut(s)	211, 481
BpiI	GAAGAC	2 cut(s)	677, 1212
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	735
BsaXI	ACNNNNNCTCC	8 cut(s)	74, 104, 128, 158, 856, 886, 1020, 1050
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 398
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	103, 217, 476
Bse21I	CCTNAGG	1 cut(s)	998
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	4 cut(s)	12, 514, 559, 1014
BseLI	CCNNNNNNNGG	2 cut(s)	233, 398
BseMII	CTCAG	1 cut(s)	989
BseNI	ACTGG	3 cut(s)	103, 217, 476
BseRI	GAGGAG	2 cut(s)	908, 1015
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	472, 536, 872, 1006
Bsh1236I	CGCG	2 cut(s)	693, 737
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	237, 734
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	264, 1241
BsiSI	CCGG	2 cut(s)	234, 856
BslI	CCNNNNNNNGG	2 cut(s)	233, 398
BsmAI	GTCTC	2 cut(s)	201, 693
BsmBI	CGTCTC	2 cut(s)	201, 693
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	2 cut(s)	237, 734
BsoBI	CYCGRG	2 cut(s)	264, 1241
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	2 cut(s)	627, 799
BspACI	CCGC	7 cut(s)	76, 653, 683, 735, 737, 830, 1104
BspANI	GGCC	2 cut(s)	237, 734
BspCNI	CTCAG	1 cut(s)	990
BspFNI	CGCG	2 cut(s)	693, 737
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	2 cut(s)	907, 1053
BspPI	GGATC	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	3 cut(s)	103, 217, 476
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	2 cut(s)	627, 799
BssNI	GRCGYC	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	4 cut(s)	482, 650, 707, 866
BstAUI	TGTACA	1 cut(s)	777
BstC8I	GCNNGC	3 cut(s)	235, 1104, 1288
BstDEI	CTNAG	1 cut(s)	998
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	4 cut(s)	12, 514, 559, 1014
BstFNI	CGCG	2 cut(s)	693, 737
BstKTI	GATC	2 cut(s)	630, 802
BstMAI	GTCTC	2 cut(s)	201, 693
BstMBI	GATC	2 cut(s)	627, 799
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	6 cut(s)	340, 482, 641, 650, 707, 866
BstSCI	CCNGG	1 cut(s)	855
BstUI	CGCG	2 cut(s)	693, 737
BstV1I	GCAGC	4 cut(s)	472, 536, 872, 1006
BstV2I	GAAGAC	2 cut(s)	677, 1212
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BstZI	CGGCCG	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	998
BsuRI	GGCC	2 cut(s)	237, 734
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	4 cut(s)	12, 514, 559, 1014
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	864
BveI	ACCTGC	2 cut(s)	907, 1053
Cac8I	GCNNGC	3 cut(s)	235, 1104, 1288
CaiI	CAGNNNCTG	1 cut(s)	866
Cfr10I	RCCGGY	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	738
Csp6I	GTAC	2 cut(s)	220, 778
CviAII	CATG	4 cut(s)	1107, 1117, 1126, 1153
CviQI	GTAC	2 cut(s)	220, 778
DdeI	CTNAG	1 cut(s)	998
DpnI	GATC	2 cut(s)	629, 801
DpnII	GATC	2 cut(s)	627, 799
EaeI	YGGCCR	2 cut(s)	235, 732
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	998
Eco88I	CYCGRG	2 cut(s)	264, 1241
Esp3I	CGTCTC	2 cut(s)	201, 693
FaeI	CATG	4 cut(s)	1110, 1120, 1129, 1156
FatI	CATG	4 cut(s)	1106, 1116, 1125, 1152
FauI	CCCGC	1 cut(s)	1111
Fnu4HI	GCNGC	7 cut(s)	486, 525, 735, 738, 830, 861, 1020
FokI	GGATG	4 cut(s)	19, 521, 566, 1021
Fsp4HI	GCNGC	7 cut(s)	486, 525, 735, 738, 830, 861, 1020
FspBI	CTAG	2 cut(s)	230, 741
GluI	GCNGC	7 cut(s)	486, 525, 735, 738, 830, 861, 1020
HaeIII	GGCC	2 cut(s)	237, 734
HapII	CCGG	2 cut(s)	234, 856
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	1110, 1120, 1129, 1156
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	6 cut(s)	240, 267, 755, 1131, 1181, 1229
HpaII	CCGG	2 cut(s)	234, 856
HphI	GGTGA	5 cut(s)	74, 289, 931, 1123, 1181
Hpy166II	GTNNAC	3 cut(s)	514, 780, 1114
Hpy188I	TCNGA	6 cut(s)	289, 316, 371, 579, 665, 1234
Hpy188III	TCNNGA	5 cut(s)	98, 190, 759, 968, 997
Hpy8I	GTNNAC	3 cut(s)	514, 780, 1114
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	60, 765, 999
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	3 cut(s)	194, 458, 1046
HpyCH4V	TGCA	6 cut(s)	420, 437, 710, 869, 1022, 1286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	340, 482, 641, 650, 707, 866
HpyF3I	CTNAG	1 cut(s)	998
HpySE526I	ACGT	3 cut(s)	194, 458, 1046
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	1110, 1120, 1129, 1156
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	738
Kzo9I	GATC	2 cut(s)	627, 799
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	4 cut(s)	472, 536, 872, 1006
LweI	GCATC	5 cut(s)	280, 430, 436, 485, 669
MaeI	CTAG	2 cut(s)	230, 741
MaeII	ACGT	3 cut(s)	194, 458, 1046
MaeIII	GTNAC	3 cut(s)	80, 352, 1036
MalI	GATC	2 cut(s)	629, 801
MboI	GATC	2 cut(s)	627, 799
MboII	GAAGA	8 cut(s)	22, 247, 637, 682, 761, 764, 794, 1217
MfeI	CAATTG	1 cut(s)	1257
MflI	RGATCY	1 cut(s)	799
MluCI	AATT	6 cut(s)	317, 402, 962, 1071, 1146, 1257
MlyI	GAGTC	3 cut(s)	249, 276, 1190
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	2 cut(s)	1191, 1294
MslI	CAYNNNNRTG	3 cut(s)	715, 785, 1163
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	2 cut(s)	234, 856
MspR9I	CCNGG	1 cut(s)	857
MunI	CAATTG	1 cut(s)	1257
Mva1269I	GAATGC	1 cut(s)	710
MvnI	CGCG	2 cut(s)	693, 737
MwoI	GCNNNNNNNGC	6 cut(s)	340, 482, 641, 650, 707, 866
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	857
NdeII	GATC	2 cut(s)	627, 799
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	4 cut(s)	1110, 1120, 1129, 1156
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	2 cut(s)	263, 500
NmuCI	GTSAC	2 cut(s)	80, 352
OliI	CACNNNNGTG	1 cut(s)	785
PaeR7I	CTCGAG	2 cut(s)	264, 1241
PaqCI	CACCTGC	1 cut(s)	907
PctI	GAATGC	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	755, 1131, 1229
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	7 cut(s)	487, 526, 736, 739, 831, 862, 1021
PleI	GAGTC	3 cut(s)	248, 275, 1189
PpsI	GAGTC	3 cut(s)	248, 275, 1189
Psp1406I	AACGTT	1 cut(s)	1046
PspN4I	GGNNCC	1 cut(s)	111
PspXI	VCTCGAGB	2 cut(s)	264, 1241
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	799
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	221, 779
RsaNI	GTAC	2 cut(s)	220, 778
RseI	CAYNNNNRTG	3 cut(s)	715, 785, 1163
SacII	CCGCGG	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	1191, 1294
SatI	GCNGC	7 cut(s)	486, 525, 735, 738, 830, 861, 1020
Sau3AI	GATC	2 cut(s)	627, 799
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	3 cut(s)	249, 276, 1190
ScrFI	CCNGG	1 cut(s)	857
SfaNI	GCATC	5 cut(s)	280, 430, 436, 485, 669
Sfr274I	CTCGAG	2 cut(s)	264, 1241
Sfr303I	CCGCGG	1 cut(s)	738
SgrBI	CCGCGG	1 cut(s)	738
SlaI	CTCGAG	2 cut(s)	264, 1241
SmiMI	CAYNNNNRTG	3 cut(s)	715, 785, 1163
SmlI	CTYRAG	3 cut(s)	188, 264, 1241
SmoI	CTYRAG	3 cut(s)	188, 264, 1241
Sse9I	AATT	6 cut(s)	317, 402, 962, 1071, 1146, 1257
SsiI	CCGC	7 cut(s)	76, 653, 683, 735, 737, 830, 1104
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	2 cut(s)	230, 741
StyD4I	CCNGG	1 cut(s)	855
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	3 cut(s)	197, 461, 1049
TasI	AATT	6 cut(s)	317, 402, 962, 1071, 1146, 1257
TatI	WGTACW	2 cut(s)	219, 777
TauI	GCSGC	3 cut(s)	737, 740, 832
TfiI	GAWTC	3 cut(s)	755, 1131, 1229
Tru1I	TTAA	2 cut(s)	1191, 1294
Tru9I	TTAA	2 cut(s)	1191, 1294
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	2 cut(s)	80, 352
TseI	GCWGC	4 cut(s)	485, 524, 860, 1019
Tsp45I	GTSAC	2 cut(s)	80, 352
TspDTI	ATGAA	3 cut(s)	23, 42, 1141
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	871
Tth111I	GACNNNGTC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	962
XhoI	CTCGAG	2 cut(s)	264, 1241
XspI	CTAG	2 cut(s)	230, 741
ZraI	GACGTC	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.