Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Reverse (-)

58430159 .. 58431481

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGATAGAAGTCGAAGTAATCTCCCAAGAAACCATAAAACCCTCATCTCCAACCCCTCACCATCTCCGCCATCACCAGCTCTCCTTTCTCGACCAGTTAGCTCCCAACACCTACATCTCTTTCCTCTACTTCTACTCCCTCCCCAACACCCACAACCACACCCAAATCTCCACCCACCTCAAGACATCTCTCTCCAAGACCCTGACCCAGTACTACCCACTAGCCGGCCGAGTCAAATTCAACCTCTTTGTGGATTGCAACGACCATGGAATCCCCTTCTACCAAGCTCGAGTCAAATCCCACTCCCTCTCTGATGCCATCACCAATCCCTCCCTCTCCGAATTGACCAACTTGTTGCCTTTCAAGCCGGACGAGCTCACAGATATAGCTCTCGGAGTTCAACTCAATCTGTTTCCGTGTGGAGGAATTGCTATTGGGTTGTGCATTTCGCATCGAGTTGCAGATGCCGTGTCTTATTTCACGTTTGTTAGGAACTGGGCATCAACTACTGCTTGTGGAAATGCCTTTGTGGATGTGGACTTTTCGGCAGCCTCCATCTTCCCACCAAAGAATATGGATGGGTACAACGGCGTTCCTATTCCGAAAAAGAATGACATTGTGAGCAAGAGGTTTGTGTTTGATGGGTCGAAGATCGAAGCTTTACGAGCAAAGTATGCGGAGAGCATCAGACTGAAGACCAAGAAACCGCCGTCTCGCGTTGAGGCATTGTCTGCATTCTTGTGGAGCAGGTTTTTGGCCGCGGTTAGCAAAGAAGAAGAATCAAGAAGTATGAGAAGGTTGTACACGGTTGTGTATATTATGGATCTTCGTTCGAGGTTTGACCCACCTCTGCCGCAGAATAGATTTGGGAACTATTACCGGGCAGCCACTGCAACTCCAATAGTGGTTGATGGGGAGGAGAGTGGTGGTCTTGTGAGGCAGGTGATTAAGGAAATAGAGAACATTGACAATAAGTATATCAGGAAATTTCAAGATGGGTATAAGGAGCATTTTGATTTATTGAGGACGAGGATGAAAAAGGCTGCAAAAGGAGAGCTTGTTACACTGACGTTTTCGAGTGTGTGCAGGTTTCCAATATATGAGGCTGATTTTGGTTGGGGGAAGCCTGCATGGGTGAACATGGCTTCCATGAGAATCAGCAACCAGATAATTTTCATGGACACTAAAATGGGTGATGGAATAGAGTCATATTTTAACTTCAAGGAGGAAGACATGGCCAAGTTTGAGCTTGATTCAGAGTTCCTCGACTTGATTTCTCCAATTGGTAATGTCAAGCAAAATCCATTTGCACGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

441

Amino Acids

50.0

Weight (kDa)

8.58

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 422	2.1e-82	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	934
Acc36I	ACCTGC	3 cut(s)	741, 934, 1080
AccII	CGCG	2 cut(s)	720, 764
AciI	CCGC	6 cut(s)	70, 680, 710, 762, 764, 857
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	3 cut(s)	229, 759, 1239
AcsI	RAATTY	2 cut(s)	239, 989
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	3 cut(s)	215, 587, 806
AfiI	CCNNNNNNNGG	3 cut(s)	227, 253, 425
AgsI	TTSAA	5 cut(s)	244, 367, 404, 995, 1225
AleI	CACNNNNGTG	1 cut(s)	812
AloI	GAACNNNNNNTCC	2 cut(s)	1133, 1165
AluBI	AGCT	8 cut(s)	82, 104, 290, 379, 392, 662, 1060, 1252
AluI	AGCT	8 cut(s)	82, 104, 290, 379, 392, 662, 1060, 1252
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	834
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	3 cut(s)	229, 759, 1239
ApeKI	GCWGC	3 cut(s)	551, 887, 1046
ApoI	RAATTY	2 cut(s)	239, 989
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	6 cut(s)	53, 68, 316, 958, 1150, 1208
AvaI	CYCGRG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	704, 1239
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	563, 899, 1033
BccI	CCATC	9 cut(s)	72, 81, 329, 566, 575, 638, 908, 992, 1193
BceAI	ACGGC	3 cut(s)	455, 607, 697
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	1 cut(s)	224
BfuAI	ACCTGC	3 cut(s)	741, 934, 1080
BisI	GCNGC	5 cut(s)	552, 762, 857, 888, 1047
BlsI	GCNGC	5 cut(s)	553, 763, 858, 889, 1048
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	884
BmeT110I	CYCGRG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	884
BmrI	ACTGGG	2 cut(s)	205, 508
BmsI	GCATC	5 cut(s)	307, 457, 463, 512, 696
BmuI	ACTGGG	2 cut(s)	205, 508
BpiI	GAAGAC	2 cut(s)	704, 1239
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	268, 762
BsaXI	ACNNNNNCTCC	8 cut(s)	68, 98, 122, 152, 883, 913, 1047, 1077
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 253, 425
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	97, 211, 503
BseDI	CCNNGG	2 cut(s)	268, 762
BseGI	GGATG	3 cut(s)	541, 586, 1041
BseLI	CCNNNNNNNGG	3 cut(s)	227, 253, 425
BseNI	ACTGG	3 cut(s)	97, 211, 503
BseRI	GAGGAG	1 cut(s)	935
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	3 cut(s)	563, 899, 1033
BsgI	GTGCAG	1 cut(s)	1108
Bsh1236I	CGCG	2 cut(s)	720, 764
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	231, 761, 1241
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	228, 371, 883
BslI	CCNNNNNNNGG	3 cut(s)	227, 253, 425
BsmAI	GTCTC	1 cut(s)	720
BsmBI	CGTCTC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	737
BsnI	GGCC	3 cut(s)	231, 761, 1241
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	2 cut(s)	654, 826
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	6 cut(s)	70, 680, 710, 762, 764, 857
BspANI	GGCC	3 cut(s)	231, 761, 1241
BspFNI	CGCG	2 cut(s)	720, 764
BspMI	ACCTGC	3 cut(s)	741, 934, 1080
BspPI	GGATC	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	97, 211, 503
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	268, 762
BssMI	GATC	2 cut(s)	654, 826
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	811
BstAPI	GCANNNNNTGC	3 cut(s)	677, 734, 893
BstAUI	TGTACA	1 cut(s)	804
BstC8I	GCNNGC	3 cut(s)	229, 1131, 1315
BstDSI	CCRYGG	2 cut(s)	268, 762
BstF5I	GGATG	3 cut(s)	541, 586, 1041
BstFNI	CGCG	2 cut(s)	720, 764
BstKTI	GATC	2 cut(s)	657, 829
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	2 cut(s)	654, 826
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	367, 376, 668, 677, 734, 893
BstSCI	CCNGG	1 cut(s)	882
BstUI	CGCG	2 cut(s)	720, 764
BstV1I	GCAGC	3 cut(s)	563, 899, 1033
BstV2I	GAAGAC	2 cut(s)	704, 1239
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	3 cut(s)	231, 761, 1241
BtgI	CCRYGG	2 cut(s)	268, 762
BtsCI	GGATG	3 cut(s)	541, 586, 1041
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	2 cut(s)	891, 1067
BveI	ACCTGC	3 cut(s)	741, 934, 1080
Cac8I	GCNNGC	3 cut(s)	229, 1131, 1315
CaiI	CAGNNNCTG	1 cut(s)	893
Cfr10I	RCCGGY	1 cut(s)	227
Cfr42I	CCGCGG	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	214, 586, 805
CviAII	CATG	6 cut(s)	269, 1134, 1144, 1153, 1180, 1237
CviQI	GTAC	3 cut(s)	214, 586, 805
DpnI	GATC	2 cut(s)	656, 828
DpnII	GATC	2 cut(s)	654, 826
EaeI	YGGCCR	3 cut(s)	229, 759, 1239
EagI	CGGCCG	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	6 cut(s)	272, 1137, 1147, 1156, 1183, 1240
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FatI	CATG	6 cut(s)	268, 1133, 1143, 1152, 1179, 1236
Fnu4HI	GCNGC	5 cut(s)	552, 762, 857, 888, 1047
FokI	GGATG	3 cut(s)	548, 593, 1048
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	552, 762, 857, 888, 1047
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	5 cut(s)	552, 762, 857, 888, 1047
HaeIII	GGCC	3 cut(s)	231, 761, 1241
HapII	CCGG	3 cut(s)	228, 371, 883
Hin1II	CATG	6 cut(s)	272, 1137, 1147, 1156, 1183, 1240
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	7 cut(s)	234, 273, 294, 782, 1158, 1208, 1256
HpaII	CCGG	3 cut(s)	228, 371, 883
HphI	GGTGA	6 cut(s)	53, 68, 316, 958, 1150, 1208
Hpy166II	GTNNAC	3 cut(s)	541, 807, 1141
Hpy188I	TCNGA	6 cut(s)	316, 343, 398, 606, 692, 1261
Hpy188III	TCNNGA	5 cut(s)	92, 184, 786, 985, 995
Hpy8I	GTNNAC	3 cut(s)	541, 807, 1141
HpyAV	CCTTC	2 cut(s)	289, 792
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	2 cut(s)	485, 1073
HpyCH4V	TGCA	9 cut(s)	261, 447, 464, 737, 896, 1049, 1089, 1133, 1313
HpyF10VI	GCNNNNNNNGC	6 cut(s)	367, 376, 668, 677, 734, 893
HpySE526I	ACGT	2 cut(s)	485, 1073
Hsp92II	CATG	6 cut(s)	272, 1137, 1147, 1156, 1183, 1240
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	765
Kzo9I	GATC	2 cut(s)	654, 826
LmnI	GCTCC	3 cut(s)	109, 747, 1009
Lsp1109I	GCAGC	3 cut(s)	563, 899, 1033
LweI	GCATC	5 cut(s)	307, 457, 463, 512, 696
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	485, 1073
MaeIII	GTNAC	1 cut(s)	1063
MalI	GATC	2 cut(s)	656, 828
MboI	GATC	2 cut(s)	654, 826
MboII	GAAGA	7 cut(s)	553, 664, 709, 788, 791, 821, 1244
MfeI	CAATTG	1 cut(s)	1284
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	1241
MluCI	AATT	6 cut(s)	239, 344, 429, 989, 1173, 1284
MluNI	TGGCCA	1 cut(s)	1241
MlyI	GAGTC	3 cut(s)	243, 303, 1217
MmeI	TCCRAC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	1241
MroNI	GCCGGC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	1241
MseI	TTAA	3 cut(s)	951, 1218, 1321
MslI	CAYNNNNRTG	3 cut(s)	742, 812, 1190
Msp20I	TGGCCA	1 cut(s)	1241
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	3 cut(s)	228, 371, 883
MspR9I	CCNGG	1 cut(s)	884
MunI	CAATTG	1 cut(s)	1284
Mva1269I	GAATGC	1 cut(s)	737
MvnI	CGCG	2 cut(s)	720, 764
MwoI	GCNNNNNNNGC	6 cut(s)	367, 376, 668, 677, 734, 893
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	654, 826
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	6 cut(s)	272, 1137, 1147, 1156, 1183, 1240
NmeAIII	GCCGAG	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	812
PaeR7I	CTCGAG	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	934
PctI	GAATGC	1 cut(s)	737
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	273, 782, 1158, 1256
PkrI	GCNGC	5 cut(s)	553, 763, 858, 889, 1048
PleI	GAGTC	3 cut(s)	242, 302, 1216
PpsI	GAGTC	3 cut(s)	242, 302, 1216
Psp124BI	GAGCTC	1 cut(s)	381
PspXI	VCTCGAGB	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	3 cut(s)	215, 587, 806
RsaNI	GTAC	3 cut(s)	214, 586, 805
RseI	CAYNNNNRTG	3 cut(s)	742, 812, 1190
SacI	GAGCTC	1 cut(s)	381
SacII	CCGCGG	1 cut(s)	765
SaqAI	TTAA	3 cut(s)	951, 1218, 1321
SatI	GCNGC	5 cut(s)	552, 762, 857, 888, 1047
Sau3AI	GATC	2 cut(s)	654, 826
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	3 cut(s)	243, 303, 1217
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	5 cut(s)	307, 457, 463, 512, 696
Sfr274I	CTCGAG	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	765
SgrBI	CCGCGG	1 cut(s)	765
SlaI	CTCGAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	3 cut(s)	742, 812, 1190
SmlI	CTYRAG	2 cut(s)	182, 291
SmoI	CTYRAG	2 cut(s)	182, 291
Sse9I	AATT	6 cut(s)	239, 344, 429, 989, 1173, 1284
SsiI	CCGC	6 cut(s)	70, 680, 710, 762, 764, 857
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	882
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	2 cut(s)	488, 1076
TaqI	TCGA	9 cut(s)	15, 93, 292, 457, 650, 657, 836, 1079, 1269
TasI	AATT	6 cut(s)	239, 344, 429, 989, 1173, 1284
TatI	WGTACW	2 cut(s)	213, 804
TauI	GCSGC	2 cut(s)	764, 859
TfiI	GAWTC	4 cut(s)	273, 782, 1158, 1256
Tru1I	TTAA	3 cut(s)	951, 1218, 1321
Tru9I	TTAA	3 cut(s)	951, 1218, 1321
TscAI	CASTG	2 cut(s)	898, 1074
TseI	GCWGC	3 cut(s)	551, 887, 1046
TspDTI	ATGAA	2 cut(s)	1052, 1168
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	898, 1074
XapI	RAATTY	2 cut(s)	239, 989
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.