Rh7AG128500

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008131
Physical Location & Seq
Forward (+)
10262376 .. 10264427
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG128500.1

Sequence Viewer

Length: 1329 bp
ATGAGGATGAAGATAGAAGTCGAAGTAATCTCCCAAGAAACCATAAAACCTTCATCTCCCACCCCTCCCCATCTCCACCGTCACCAGCTCTCCTTTCTCGACCAGTTAGCTCCCCACACCTACATCTCTTTCCTCTACTTCTACTCCCTCCCCAACACCCACAACCACACCCAAATCTCCACCCACCTCAAGACGTCTCTCTCCAAAACTCTGACCCAGTACTACCCACTAGCCGGCCGAGTCAAGTTCAACCTCTTTGTGGATTGCAACGACCATGGAATCCCCTTCTACCAAGCTCGAGTCAAATCCCACTCCCTCTCTGATGCCATCACCAATCCCTCCCTCTCCGAATTGACCAACTTGTTGCCTTTCAAGCCTGACGAGGTCACAAATATAGCTCTCGGAGTTCAACTCAATCTGTTTCCGTGTGGAGGAATTGCTGTTGGGTTGTGCATTTCGCATCGAGTTGCAGATGCCTTGTCTTATTTCACGTTTGTTAGGAACTGGGCATCAACTGCTGCTTGTGGAAATGCCTTTGTGGATGTGGACTTCTCGGCAGCTTCTATCTTCCCACCAAAGAATATGGATGGGTATAACGGCGTTCCTATTCCGAAAAAGAATGACATTGTGAGCAAGAGGTTTGTGTTTGATGGGTCGAAGATCGAAGCTTTACGAGCAAAGTATGCGGAGAGCATCAGACTGAAGACCAAGAAACCGCCGTCTCGCGTTGAGGCATTGTCTGTATTCTTGTGGAACAGGTTTCTGGCCGCGGCTGCAAAAGAAGAAGAATCAACAAGTTTGAGAAGGCTGTACACGGTTGTGTATGTTATGGATCTTCGTTCGAGGTTCGACCCACCTCTGCCGCAGAATAGATTTGGGAACTATTACCGGGCAGCCACTGCAACTCCAATATTGGTTGATGGGGAGGAGACTGGTGGTCTTGTGAGGCAGGTGATTGAGGAAATAGAGAACATTGACAATAAGTATATGAGGAAATTTCAAGAGGGCTATAAGGAACATTTTGATTTCCTGAGGAGAAGGATGGAAAGGGCTGCAAAGGGAGAGCTGGTTACACTAACGTTTTCGAGTGTTCGCAGGTTTCCAATTTATGAGGCTGATTTTGGTTGGGGGAAGCCTGCATGGGTGAACATGGCTTCCATGAGAATCAGCAACCAGATAATTTTCATGGACACCAAAATGGGTGATGGAATAGAGTCATATTTTAACTTCAAGGAGGAAGACATAGCCAAGTTCGAGCTTGATTCAGAGTTCCTCGAGTTGATTTCTCCAATTGGTAATGTCAAGCAAAATCCATTTGCACGCCTTTAA

Protein Analysis

442

Amino Acids

50.38

Weight (kDa)

8.79

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 424 5.8e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 940
AatII GACGTC 1 cut(s) 197
Acc36I ACCTGC 2 cut(s) 940, 1086
AccII CGCG 2 cut(s) 726, 770
AciI CCGC 5 cut(s) 686, 716, 768, 770, 863
AclI AACGTT 1 cut(s) 1079
AclWI GGATC 1 cut(s) 840
AcoI YGGCCR 2 cut(s) 235, 765
AcsI RAATTY 1 cut(s) 995
AcuI CTGAAG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 221, 812
AfiI CCNNNNNNNGG 3 cut(s) 233, 259, 431
AgsI TTSAA 5 cut(s) 250, 373, 410, 1001, 1231
AhdI GACNNNNNGTC 1 cut(s) 936
AleI CACNNNNGTG 1 cut(s) 818
AloI GAACNNNNNNTCC 2 cut(s) 1139, 1171
AluBI AGCT 8 cut(s) 88, 110, 296, 398, 560, 668, 1066, 1258
AluI AGCT 8 cut(s) 88, 110, 296, 398, 560, 668, 1066, 1258
Alw26I GTCTC 3 cut(s) 201, 726, 923
AlwI GGATC 1 cut(s) 840
AlwNI CAGNNNCTG 1 cut(s) 899
Ama87I CYCGRG 2 cut(s) 297, 1274
AoxI GGCC 2 cut(s) 235, 765
ApeKI GCWGC 5 cut(s) 518, 557, 773, 893, 1052
ApoI RAATTY 1 cut(s) 995
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 5 cut(s) 74, 322, 964, 1156, 1214
AvaI CYCGRG 2 cut(s) 297, 1274
AxyI CCTNAGG 1 cut(s) 1031
BbsI GAAGAC 2 cut(s) 710, 1245
BbvI GCAGC 5 cut(s) 505, 569, 760, 905, 1039
BccI CCATC 7 cut(s) 78, 335, 581, 644, 914, 1036, 1199
BceAI ACGGC 2 cut(s) 613, 703
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 201, 726, 923
BfaI CTAG 1 cut(s) 230
BfuAI ACCTGC 2 cut(s) 940, 1086
BisI GCNGC 8 cut(s) 519, 558, 768, 771, 774, 863, 894, 1053
BlsI GCNGC 8 cut(s) 520, 559, 769, 772, 775, 864, 895, 1054
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 890
BmeRI GACNNNNNGTC 1 cut(s) 936
BmeT110I CYCGRG 2 cut(s) 297, 1274
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 2 cut(s) 211, 514
BmsI GCATC 5 cut(s) 313, 463, 469, 518, 702
BmuI ACTGGG 2 cut(s) 211, 514
BpiI GAAGAC 2 cut(s) 710, 1245
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 890
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 274, 768
BsaXI ACNNNNNCTCC 8 cut(s) 74, 104, 128, 158, 889, 919, 1053, 1083
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 259, 431
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 4 cut(s) 103, 217, 509, 937
Bse21I CCTNAGG 1 cut(s) 1031
BseDI CCNNGG 2 cut(s) 274, 768
BseGI GGATG 4 cut(s) 12, 547, 592, 1047
BseLI CCNNNNNNNGG 3 cut(s) 233, 259, 431
BseMII CTCAG 1 cut(s) 1022
BseNI ACTGG 4 cut(s) 103, 217, 509, 937
BseRI GAGGAG 2 cut(s) 941, 1048
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 5 cut(s) 505, 569, 760, 905, 1039
Bsh1236I CGCG 2 cut(s) 726, 770
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 237, 767
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 2 cut(s) 297, 1274
BsiSI CCGG 2 cut(s) 234, 889
BslI CCNNNNNNNGG 3 cut(s) 233, 259, 431
BsmAI GTCTC 3 cut(s) 201, 726, 923
BsmBI CGTCTC 2 cut(s) 201, 726
BsnI GGCC 2 cut(s) 237, 767
BsoBI CYCGRG 2 cut(s) 297, 1274
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 2 cut(s) 660, 832
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 5 cut(s) 686, 716, 768, 770, 863
BspANI GGCC 2 cut(s) 237, 767
BspCNI CTCAG 1 cut(s) 1023
BspFNI CGCG 2 cut(s) 726, 770
BspMI ACCTGC 2 cut(s) 940, 1086
BspPI GGATC 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 4 cut(s) 103, 217, 509, 937
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 274, 768
BssMI GATC 2 cut(s) 660, 832
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 80, 817
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 3 cut(s) 515, 683, 899
BstAUI TGTACA 1 cut(s) 810
BstC8I GCNNGC 3 cut(s) 235, 1137, 1321
BstDEI CTNAG 1 cut(s) 1031
BstDSI CCRYGG 2 cut(s) 274, 768
BstF5I GGATG 4 cut(s) 12, 547, 592, 1047
BstFNI CGCG 2 cut(s) 726, 770
BstKTI GATC 2 cut(s) 663, 835
BstMAI GTCTC 3 cut(s) 201, 726, 923
BstMBI GATC 2 cut(s) 660, 832
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 6 cut(s) 373, 515, 674, 683, 773, 899
BstSCI CCNGG 1 cut(s) 888
BstUI CGCG 2 cut(s) 726, 770
BstV1I GCAGC 5 cut(s) 505, 569, 760, 905, 1039
BstV2I GAAGAC 2 cut(s) 710, 1245
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BstZI CGGCCG 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 1031
BsuRI GGCC 2 cut(s) 237, 767
BtgI CCRYGG 2 cut(s) 274, 768
BtsCI GGATG 4 cut(s) 12, 547, 592, 1047
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 1 cut(s) 897
BveI ACCTGC 2 cut(s) 940, 1086
Cac8I GCNNGC 3 cut(s) 235, 1137, 1321
CaiI CAGNNNCTG 1 cut(s) 899
Cfr10I RCCGGY 1 cut(s) 233
Cfr42I CCGCGG 1 cut(s) 771
Csp6I GTAC 2 cut(s) 220, 811
CviAII CATG 5 cut(s) 275, 1140, 1150, 1159, 1186
CviQI GTAC 2 cut(s) 220, 811
DdeI CTNAG 1 cut(s) 1031
DpnI GATC 2 cut(s) 662, 834
DpnII GATC 2 cut(s) 660, 832
DriI GACNNNNNGTC 1 cut(s) 936
EaeI YGGCCR 2 cut(s) 235, 765
EagI CGGCCG 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 936
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 274
Eco52I CGGCCG 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 1031
Eco88I CYCGRG 2 cut(s) 297, 1274
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
Esp3I CGTCTC 2 cut(s) 201, 726
FaeI CATG 5 cut(s) 278, 1143, 1153, 1162, 1189
FatI CATG 5 cut(s) 274, 1139, 1149, 1158, 1185
Fnu4HI GCNGC 8 cut(s) 519, 558, 768, 771, 774, 863, 894, 1053
FokI GGATG 4 cut(s) 19, 554, 599, 1054
Fsp4HI GCNGC 8 cut(s) 519, 558, 768, 771, 774, 863, 894, 1053
FspBI CTAG 1 cut(s) 230
GluI GCNGC 8 cut(s) 519, 558, 768, 771, 774, 863, 894, 1053
HaeIII GGCC 2 cut(s) 237, 767
HapII CCGG 2 cut(s) 234, 889
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 5 cut(s) 278, 1143, 1153, 1162, 1189
HindIII AAGCTT 1 cut(s) 666
HinfI GANTC 7 cut(s) 240, 279, 300, 788, 1164, 1214, 1262
HpaII CCGG 2 cut(s) 234, 889
HphI GGTGA 5 cut(s) 74, 322, 964, 1156, 1214
Hpy166II GTNNAC 3 cut(s) 547, 813, 1147
Hpy188I TCNGA 7 cut(s) 213, 322, 349, 404, 612, 698, 1267
Hpy188III TCNNGA 4 cut(s) 98, 190, 1001, 1030
Hpy8I GTNNAC 3 cut(s) 547, 813, 1147
HpyAV CCTTC 4 cut(s) 60, 295, 798, 1032
HpyCH4III ACNGT 2 cut(s) 80, 817
HpyCH4IV ACGT 3 cut(s) 194, 491, 1079
HpyCH4V TGCA 8 cut(s) 267, 453, 470, 776, 902, 1055, 1139, 1319
HpyF10VI GCNNNNNNNGC 6 cut(s) 373, 515, 674, 683, 773, 899
HpyF3I CTNAG 1 cut(s) 1031
HpySE526I ACGT 3 cut(s) 194, 491, 1079
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 5 cut(s) 278, 1143, 1153, 1162, 1189
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
KspI CCGCGG 1 cut(s) 771
Kzo9I GATC 2 cut(s) 660, 832
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 5 cut(s) 505, 569, 760, 905, 1039
LweI GCATC 5 cut(s) 313, 463, 469, 518, 702
MaeI CTAG 1 cut(s) 230
MaeII ACGT 3 cut(s) 194, 491, 1079
MaeIII GTNAC 3 cut(s) 80, 385, 1069
MalI GATC 2 cut(s) 662, 834
MboI GATC 2 cut(s) 660, 832
MboII GAAGA 8 cut(s) 22, 559, 670, 715, 794, 797, 827, 1250
MfeI CAATTG 1 cut(s) 1290
MflI RGATCY 1 cut(s) 832
MluCI AATT 6 cut(s) 350, 435, 995, 1104, 1179, 1290
MlyI GAGTC 3 cut(s) 249, 309, 1223
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 2 cut(s) 1224, 1327
MslI CAYNNNNRTG 2 cut(s) 818, 1196
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 2 cut(s) 234, 889
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 1 cut(s) 1290
MvnI CGCG 2 cut(s) 726, 770
MwoI GCNNNNNNNGC 6 cut(s) 373, 515, 674, 683, 773, 899
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 274
NdeII GATC 2 cut(s) 660, 832
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 5 cut(s) 278, 1143, 1153, 1162, 1189
NmeAIII GCCGAG 2 cut(s) 263, 533
NmuCI GTSAC 2 cut(s) 80, 385
OliI CACNNNNGTG 1 cut(s) 818
PaeR7I CTCGAG 2 cut(s) 297, 1274
PaqCI CACCTGC 1 cut(s) 940
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 4 cut(s) 279, 788, 1164, 1262
PflFI GACNNNGTC 1 cut(s) 383
PkrI GCNGC 8 cut(s) 520, 559, 769, 772, 775, 864, 895, 1054
PleI GAGTC 3 cut(s) 248, 308, 1222
PpsI GAGTC 3 cut(s) 248, 308, 1222
Psp1406I AACGTT 1 cut(s) 1079
PspXI VCTCGAGB 2 cut(s) 297, 1274
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 1 cut(s) 832
PsyI GACNNNGTC 1 cut(s) 383
RsaI GTAC 2 cut(s) 221, 812
RsaNI GTAC 2 cut(s) 220, 811
RseI CAYNNNNRTG 2 cut(s) 818, 1196
SacII CCGCGG 1 cut(s) 771
SaqAI TTAA 2 cut(s) 1224, 1327
SatI GCNGC 8 cut(s) 519, 558, 768, 771, 774, 863, 894, 1053
Sau3AI GATC 2 cut(s) 660, 832
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 3 cut(s) 249, 309, 1223
ScrFI CCNGG 1 cut(s) 890
SfaNI GCATC 5 cut(s) 313, 463, 469, 518, 702
Sfr274I CTCGAG 2 cut(s) 297, 1274
Sfr303I CCGCGG 1 cut(s) 771
SgrBI CCGCGG 1 cut(s) 771
SlaI CTCGAG 2 cut(s) 297, 1274
SmiMI CAYNNNNRTG 2 cut(s) 818, 1196
SmlI CTYRAG 3 cut(s) 188, 297, 1274
SmoI CTYRAG 3 cut(s) 188, 297, 1274
Sse9I AATT 6 cut(s) 350, 435, 995, 1104, 1179, 1290
SsiI CCGC 5 cut(s) 686, 716, 768, 770, 863
SspI AATATT 1 cut(s) 912
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 80, 817
TaiI ACGT 3 cut(s) 197, 494, 1082
TasI AATT 6 cut(s) 350, 435, 995, 1104, 1179, 1290
TatI WGTACW 2 cut(s) 219, 810
TauI GCSGC 3 cut(s) 770, 773, 865
TfiI GAWTC 4 cut(s) 279, 788, 1164, 1262
Tru1I TTAA 2 cut(s) 1224, 1327
Tru9I TTAA 2 cut(s) 1224, 1327
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 2 cut(s) 80, 385
TseI GCWGC 5 cut(s) 518, 557, 773, 893, 1052
Tsp45I GTSAC 2 cut(s) 80, 385
TspDTI ATGAA 3 cut(s) 23, 42, 1174
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 383
XapI RAATTY 1 cut(s) 995
XhoI CTCGAG 2 cut(s) 297, 1274
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.