Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Reverse (-)

56757360 .. 56758688

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAGGATGAAGATAGAAGTCGAAGTAATCTCCCAAGAAACCATTAAACCTTCATCTCCCACCCCTCCCCATCTCCGCCGTCACCAGCTCTCCTTTCTCGACCAGTTAGCTCCCAACACCTACATCTCTTTCCTCTACTTCTACTCCCTCCCCAACACCCACAACCACACCCAAATCTCCACCCACCTCAAGACATCTCTCTCCAAAACCCTGACCCAGTACTACCCACTAGCCGGCCGAGTCAAGTTCAACCTCTTTGTGGATTGCAACGACCATGGAATCCCCTTCTACCAAGCTCGAGTCAAATCCCACTCACTCTCTGATGCCATCACCAATCCCTCCCTCTCCGAATTGACCAACTTGTTGCCTTTCAAGCCCGACGAGGTCACAGATATAGCTCTCGGAGTTCAACTCAATCTGTTTCCGTGTGGAGGAATTGCTATTGGGTTGTGCATTTCGCATCGAGTTGCAGATGCCGTGTCTTATTTCACGTTTGTTAGGAACTGGGCATCCACTACTGCTTGTGGAAATGCCTTTGTGGATGCGGACTTCTCGGCAGCTTCTATCTTCCCACCAAAGAATATGGATGGGTATAACGGCGTTCCTATTCCGAAAAAGAATGACATTGTGAGCAAGAGGTTTGTGTTTGATGGGTCGAAGATCGAAGCTTTACGAGCAAAGTATGCGGAGAGCATCAGACTGAAGACCAAGAAACCGCCGTCTCGCGTTGAGGCATTGTCTGCATTCTTGTGGAACAGGTTTCTGGCCGCGGCTGCAAAAGAAGAAGAATCAACAAGTTTGAGAAGGCTGTACACGGTTGTGTATATTATGGATCTTCGTTCGAGGTTTGACCCACCTCTGCCGCAGAATAGATTTGGGAACTATTACCGGGCAGCCACTGCAACTCCAATATTGGTTGATGGGGAGGAGAGTGGTGGTCTTGTGAGGCTGGTGATTGAGGAAATAGAGAACATTGACAATAAGTATATGAGGAAATTTCAAGATGGGTATAAGGAACATTTTGATTTCCTGAGGAGAATGATGGAAAGGGCTGCAAAAGGAGAGCTTGTTACACTAACGTTTTCGAGTGTGTGCAGGTTTCCAATTTATGAGGCTGATTTTGGTTGGGGGAAGCCTGCATGGGTGAACATGGCTTCCATGAGAATCAGCAACCAGATAATTTTCATGGACACCAAAATGGGTGATGGAATAGAGTCATATTTTAACTTCAAGGTGGAAGACATAGCCAAGTTCGAGCTTGATTCAGAGTTCCTCGAGTTGATTTCTCCAATTGGTAACGTCAAGCAAAATCCATTTGCACGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

442

Amino Acids

50.21

Weight (kDa)

8.59

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 424	7.6e-81	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1086
AccII	CGCG	2 cut(s)	726, 770
AciI	CCGC	7 cut(s)	76, 545, 686, 716, 768, 770, 863
AclI	AACGTT	1 cut(s)	1079
AclWI	GGATC	1 cut(s)	840
AcoI	YGGCCR	2 cut(s)	235, 765
AcsI	RAATTY	1 cut(s)	995
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	221, 812
AfiI	CCNNNNNNNGG	3 cut(s)	233, 259, 431
AgsI	TTSAA	5 cut(s)	250, 373, 410, 1001, 1231
AleI	CACNNNNGTG	1 cut(s)	818
AloI	GAACNNNNNNTCC	4 cut(s)	494, 526, 1139, 1171
AluBI	AGCT	8 cut(s)	88, 110, 296, 398, 560, 668, 1066, 1258
AluI	AGCT	8 cut(s)	88, 110, 296, 398, 560, 668, 1066, 1258
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	1 cut(s)	840
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	2 cut(s)	297, 1274
AoxI	GGCC	2 cut(s)	235, 765
ApeKI	GCWGC	4 cut(s)	557, 773, 893, 1052
ApoI	RAATTY	1 cut(s)	995
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	5 cut(s)	74, 322, 964, 1156, 1214
AvaI	CYCGRG	2 cut(s)	297, 1274
AxyI	CCTNAGG	1 cut(s)	1031
BbsI	GAAGAC	2 cut(s)	710, 1245
BbvI	GCAGC	4 cut(s)	569, 760, 905, 1039
BccI	CCATC	8 cut(s)	78, 335, 581, 644, 914, 998, 1036, 1199
BceAI	ACGGC	4 cut(s)	63, 461, 613, 703
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	1086
BisI	GCNGC	7 cut(s)	558, 768, 771, 774, 863, 894, 1053
BlsI	GCNGC	7 cut(s)	559, 769, 772, 775, 864, 895, 1054
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	890
BmeT110I	CYCGRG	2 cut(s)	297, 1274
BmrFI	CCNGG	1 cut(s)	890
BmrI	ACTGGG	2 cut(s)	211, 514
BmsI	GCATC	6 cut(s)	313, 463, 469, 518, 532, 702
BmuI	ACTGGG	2 cut(s)	211, 514
BpiI	GAAGAC	2 cut(s)	710, 1245
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	890
BsaJI	CCNNGG	2 cut(s)	274, 768
BsaXI	ACNNNNNCTCC	8 cut(s)	74, 104, 128, 158, 889, 919, 1053, 1083
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 259, 431
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	103, 217, 509
Bse21I	CCTNAGG	1 cut(s)	1031
BseDI	CCNNGG	2 cut(s)	274, 768
BseGI	GGATG	4 cut(s)	12, 509, 547, 592
BseLI	CCNNNNNNNGG	3 cut(s)	233, 259, 431
BseMII	CTCAG	1 cut(s)	1022
BseNI	ACTGG	3 cut(s)	103, 217, 509
BseRI	GAGGAG	2 cut(s)	941, 1048
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	569, 760, 905, 1039
BsgI	GTGCAG	1 cut(s)	1114
Bsh1236I	CGCG	2 cut(s)	726, 770
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	237, 767
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	297, 1274
BsiSI	CCGG	2 cut(s)	234, 889
BslI	CCNNNNNNNGG	3 cut(s)	233, 259, 431
BsmAI	GTCTC	1 cut(s)	726
BsmBI	CGTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	2 cut(s)	237, 767
BsoBI	CYCGRG	2 cut(s)	297, 1274
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	2 cut(s)	660, 832
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	7 cut(s)	76, 545, 686, 716, 768, 770, 863
BspANI	GGCC	2 cut(s)	237, 767
BspCNI	CTCAG	1 cut(s)	1023
BspFNI	CGCG	2 cut(s)	726, 770
BspMI	ACCTGC	1 cut(s)	1086
BspPI	GGATC	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	3 cut(s)	103, 217, 509
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	274, 768
BssMI	GATC	2 cut(s)	660, 832
BssT1I	CCWWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	817
BstAPI	GCANNNNNTGC	3 cut(s)	683, 740, 899
BstAUI	TGTACA	1 cut(s)	810
BstC8I	GCNNGC	3 cut(s)	235, 1137, 1321
BstDEI	CTNAG	1 cut(s)	1031
BstDSI	CCRYGG	2 cut(s)	274, 768
BstF5I	GGATG	4 cut(s)	12, 509, 547, 592
BstFNI	CGCG	2 cut(s)	726, 770
BstKTI	GATC	2 cut(s)	663, 835
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	2 cut(s)	660, 832
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	6 cut(s)	373, 674, 683, 740, 773, 899
BstSCI	CCNGG	1 cut(s)	888
BstUI	CGCG	2 cut(s)	726, 770
BstV1I	GCAGC	4 cut(s)	569, 760, 905, 1039
BstV2I	GAAGAC	2 cut(s)	710, 1245
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BstZI	CGGCCG	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	1031
BsuRI	GGCC	2 cut(s)	237, 767
BtgI	CCRYGG	2 cut(s)	274, 768
BtsCI	GGATG	4 cut(s)	12, 509, 547, 592
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	1 cut(s)	897
BveI	ACCTGC	1 cut(s)	1086
Cac8I	GCNNGC	3 cut(s)	235, 1137, 1321
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	220, 811
CviAII	CATG	5 cut(s)	275, 1140, 1150, 1159, 1186
CviQI	GTAC	2 cut(s)	220, 811
DdeI	CTNAG	1 cut(s)	1031
DpnI	GATC	2 cut(s)	662, 834
DpnII	GATC	2 cut(s)	660, 832
EaeI	YGGCCR	2 cut(s)	235, 765
EagI	CGGCCG	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	722
Eco81I	CCTNAGG	1 cut(s)	1031
Eco88I	CYCGRG	2 cut(s)	297, 1274
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	5 cut(s)	278, 1143, 1153, 1162, 1189
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FatI	CATG	5 cut(s)	274, 1139, 1149, 1158, 1185
Fnu4HI	GCNGC	7 cut(s)	558, 768, 771, 774, 863, 894, 1053
FokI	GGATG	4 cut(s)	19, 496, 554, 599
Fsp4HI	GCNGC	7 cut(s)	558, 768, 771, 774, 863, 894, 1053
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	7 cut(s)	558, 768, 771, 774, 863, 894, 1053
HaeIII	GGCC	2 cut(s)	237, 767
HapII	CCGG	2 cut(s)	234, 889
Hin1II	CATG	5 cut(s)	278, 1143, 1153, 1162, 1189
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	7 cut(s)	240, 279, 300, 788, 1164, 1214, 1262
HpaII	CCGG	2 cut(s)	234, 889
HphI	GGTGA	5 cut(s)	74, 322, 964, 1156, 1214
Hpy166II	GTNNAC	2 cut(s)	813, 1147
Hpy188I	TCNGA	6 cut(s)	322, 349, 404, 612, 698, 1267
Hpy188III	TCNNGA	4 cut(s)	98, 190, 1001, 1030
Hpy8I	GTNNAC	2 cut(s)	813, 1147
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	60, 295, 798
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	3 cut(s)	491, 1079, 1299
HpyF10VI	GCNNNNNNNGC	6 cut(s)	373, 674, 683, 740, 773, 899
HpyF3I	CTNAG	1 cut(s)	1031
HpySE526I	ACGT	3 cut(s)	491, 1079, 1299
Hsp92II	CATG	5 cut(s)	278, 1143, 1153, 1162, 1189
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	2 cut(s)	660, 832
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	4 cut(s)	569, 760, 905, 1039
LweI	GCATC	6 cut(s)	313, 463, 469, 518, 532, 702
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	3 cut(s)	491, 1079, 1299
MaeIII	GTNAC	4 cut(s)	80, 385, 1069, 1295
MalI	GATC	2 cut(s)	662, 834
MboI	GATC	2 cut(s)	660, 832
MboII	GAAGA	8 cut(s)	22, 559, 670, 715, 794, 797, 827, 1250
MfeI	CAATTG	1 cut(s)	1290
MflI	RGATCY	1 cut(s)	832
MluCI	AATT	6 cut(s)	350, 435, 995, 1104, 1179, 1290
MlyI	GAGTC	3 cut(s)	249, 309, 1223
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	3 cut(s)	45, 1224, 1327
MslI	CAYNNNNRTG	3 cut(s)	748, 818, 1196
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	2 cut(s)	234, 889
MspR9I	CCNGG	1 cut(s)	890
MunI	CAATTG	1 cut(s)	1290
Mva1269I	GAATGC	1 cut(s)	743
MvnI	CGCG	2 cut(s)	726, 770
MwoI	GCNNNNNNNGC	6 cut(s)	373, 674, 683, 740, 773, 899
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	660, 832
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	278, 1143, 1153, 1162, 1189
NmeAIII	GCCGAG	2 cut(s)	263, 533
NmuCI	GTSAC	2 cut(s)	80, 385
OliI	CACNNNNGTG	1 cut(s)	818
PaeR7I	CTCGAG	2 cut(s)	297, 1274
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	4 cut(s)	279, 788, 1164, 1262
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	7 cut(s)	559, 769, 772, 775, 864, 895, 1054
PleI	GAGTC	3 cut(s)	248, 308, 1222
PpsI	GAGTC	3 cut(s)	248, 308, 1222
Psp1406I	AACGTT	1 cut(s)	1079
PspXI	VCTCGAGB	2 cut(s)	297, 1274
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	832
PsyI	GACNNNGTC	1 cut(s)	383
RsaI	GTAC	2 cut(s)	221, 812
RsaNI	GTAC	2 cut(s)	220, 811
RseI	CAYNNNNRTG	3 cut(s)	748, 818, 1196
SacII	CCGCGG	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	45, 1224, 1327
SatI	GCNGC	7 cut(s)	558, 768, 771, 774, 863, 894, 1053
Sau3AI	GATC	2 cut(s)	660, 832
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	3 cut(s)	249, 309, 1223
ScrFI	CCNGG	1 cut(s)	890
SfaNI	GCATC	6 cut(s)	313, 463, 469, 518, 532, 702
Sfr274I	CTCGAG	2 cut(s)	297, 1274
Sfr303I	CCGCGG	1 cut(s)	771
SgrBI	CCGCGG	1 cut(s)	771
SlaI	CTCGAG	2 cut(s)	297, 1274
SmiMI	CAYNNNNRTG	3 cut(s)	748, 818, 1196
SmlI	CTYRAG	3 cut(s)	188, 297, 1274
SmoI	CTYRAG	3 cut(s)	188, 297, 1274
Sse9I	AATT	6 cut(s)	350, 435, 995, 1104, 1179, 1290
SsiI	CCGC	7 cut(s)	76, 545, 686, 716, 768, 770, 863
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	888
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	3 cut(s)	494, 1082, 1302
TasI	AATT	6 cut(s)	350, 435, 995, 1104, 1179, 1290
TatI	WGTACW	2 cut(s)	219, 810
TauI	GCSGC	3 cut(s)	770, 773, 865
TfiI	GAWTC	4 cut(s)	279, 788, 1164, 1262
Tru1I	TTAA	3 cut(s)	45, 1224, 1327
Tru9I	TTAA	3 cut(s)	45, 1224, 1327
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	2 cut(s)	80, 385
TseI	GCWGC	4 cut(s)	557, 773, 893, 1052
Tsp45I	GTSAC	2 cut(s)	80, 385
TspDTI	ATGAA	3 cut(s)	23, 42, 1174
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	904
Tth111I	GACNNNGTC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	995
XhoI	CTCGAG	2 cut(s)	297, 1274
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.