FvH4_5g06140

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008131
Physical Location & Seq
Reverse (-)
3619217 .. 3620536
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06140.t1

Sequence Viewer

Length: 1320 bp
ATGGAAGTTGAAGTAATCTCCCTAGAGACCGTAACACCCTCAGCCCCAACCCCTCACCATCTCCCCCGTCACCAACTCTCCTTTCTCGACCAGTTTGCTCCCCACGTCTACATCGGTTTCCTCTACTTCTACTCCCTCCCCAACACCCACAGCCACTCTCAAATCTCCACCCACCTCAAGAGATCTCTCTCCAAAACCTTAACTCACTACTACCCTCTAGCCGGCCGAGTCCGATTCAACCTCTTCGTGGATTGCAACGACCATGGAATCCCCTTCCACCAAGCTCGAGTCAAATCCCACTCACTCTCTGATGCCATCACCAATCCCTCCCTCTCCGAACTGAACAGCTTGCTGCCTTTCAAGCTCGACGAGCTGACAGAGATACCTCTCGGAGTTCAACTCAATCTGTTTCCGTGTGGAGGAGTTGCTGTTGGGGTGTGCGTTTCGCATAGACTCGCAGATGCCTTGTCTTATTTCACATTTGTTAGGAACTGGGCTGCAACTGCTTGTGGAGATGCAGACGTGGATGTGGACTTCTCAGCAGCCTCGATCTTCCCACCGAAGAATATGGAAGGGTATAATGGAGTTCCTATTCCGAAAAGGAATGACGTTGTGAGCAAGAGGTTTGTGTTTGATGGGTTGAAGATTGAAGCTTTACGAGCAACGTATGAAGAGAGCATCAGACTGAAAATGGAGATGAAGAGACGGCCGTCTCGCGTTGAGGCATTGTCTGCTTTCTTGTGGAACAGGTTTAAGGCCGCGGCTGCAAAAGAAGAAGAACAATCGAGTTTGAGAAGGTTGTACACGGTTGTGTATATAATGGATCTTCGGTCGAGGTTTGAACCACCTCTCCAGCAGAATAGCTTTGGCAACTATTACCGGGCAGCAACTGCGACGCCAACATTGGTTGATGGGGAGGAGAGTGGTGGCCTTGTGAGGGAGGTGATTGAGGAAATAGACAAGATTGACAATAAGTATATGAGGAAATTTCAAGATGGCTATAAGGAGCATTTGGATTTCATGAGGAGAAGGATGGAGAGGGCTGCAAAAGGAGAGCTGATTACACTAACGTTTTCGAGTGTGTGCAGGTTTCCAATCTATGAGGCTGATTTTGGTTGGGGGAAGCCTGTGTGGGTGAATATGGCTTCCATGAAAATCAGCAACCAGATAATTTTCATGGACACCAAAACGGGTGATGGAATAGAGTCATATTTTAACTTCAAGGAGGAAGACATGGCCAAGTTCGAGCGCGACTCAGAGTTCCTCCAGTTGCTTTCTCCAAATGGTAATGTTGAGCAAAATCCATTAGCACGCCTTTAG

Protein Analysis

440

Amino Acids

50.08

Weight (kDa)

6.52

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 421 1.3e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1077
AccI GTMKAC 1 cut(s) 108
AccII CGCG 3 cut(s) 717, 761, 1251
AciI CCGC 2 cut(s) 759, 761
AclI AACGTT 1 cut(s) 1070
AclWI GGATC 1 cut(s) 831
AcoI YGGCCR 3 cut(s) 223, 707, 1236
AcsI RAATTY 1 cut(s) 986
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 4 cut(s) 221, 247, 419, 937
AgsI TTSAA 9 cut(s) 11, 238, 361, 398, 643, 650, 842, 992, 1222
AjiI CACGTC 2 cut(s) 106, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 809
AloI GAACNNNNNNTCC 2 cut(s) 834, 866
AluBI AGCT 7 cut(s) 284, 348, 364, 373, 653, 864, 1057
AluI AGCT 7 cut(s) 284, 348, 364, 373, 653, 864, 1057
Alw26I GTCTC 3 cut(s) 20, 697, 717
AlwI GGATC 1 cut(s) 831
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 5 cut(s) 223, 707, 756, 928, 1236
ApeKI GCWGC 6 cut(s) 352, 497, 542, 764, 884, 1043
ApoI RAATTY 1 cut(s) 986
AspLEI GCGC 1 cut(s) 1251
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 6 cut(s) 47, 62, 310, 955, 1147, 1205
AvaI CYCGRG 1 cut(s) 285
BalI TGGCCA 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 1236
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 6 cut(s) 339, 484, 554, 751, 896, 1030
BccI CCATC 7 cut(s) 66, 323, 629, 905, 989, 1027, 1190
BceAI ACGGC 2 cut(s) 694, 722
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 3 cut(s) 20, 697, 717
BfaI CTAG 2 cut(s) 23, 218
BfuAI ACCTGC 1 cut(s) 1077
BglII AGATCT 1 cut(s) 182
BisI GCNGC 8 cut(s) 353, 498, 543, 759, 762, 765, 885, 1044
BlsI GCNGC 8 cut(s) 354, 499, 544, 760, 763, 766, 886, 1045
Bme1390I CCNGG 1 cut(s) 881
BmeT110I CYCGRG 1 cut(s) 285
BmgBI CACGTC 2 cut(s) 106, 523
BmrFI CCNGG 1 cut(s) 881
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 4 cut(s) 301, 451, 505, 687
BmuI ACTGGG 1 cut(s) 502
BoxI GACNNNNGTC 1 cut(s) 709
BpiI GAAGAC 1 cut(s) 1236
BplI GAGNNNNNCTC 4 cut(s) 384, 416, 1238, 1270
BpmI CTGGAG 2 cut(s) 836, 1250
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 881
BsaHI GRCGYC 1 cut(s) 896
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 262, 759
BsaXI ACNNNNNCTCC 8 cut(s) 62, 92, 116, 146, 414, 444, 834, 864
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 247, 419, 937
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 91, 497, 1267
BseDI CCNNGG 2 cut(s) 262, 759
BseGI GGATG 2 cut(s) 532, 1038
BseLI CCNNNNNNNGG 4 cut(s) 221, 247, 419, 937
BseMII CTCAG 3 cut(s) 54, 552, 1269
BseNI ACTGG 3 cut(s) 91, 497, 1267
BseRI GAGGAG 3 cut(s) 435, 932, 1039
BseX3I CGGCCG 2 cut(s) 223, 707
BseXI GCAGC 6 cut(s) 339, 484, 554, 751, 896, 1030
BsgI GTGCAG 1 cut(s) 1105
Bsh1236I CGCG 3 cut(s) 717, 761, 1251
Bsh1285I CGRYCG 3 cut(s) 226, 710, 833
BshFI GGCC 5 cut(s) 225, 709, 758, 930, 1238
BsiEI CGRYCG 3 cut(s) 226, 710, 833
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 222, 880
BslI CCNNNNNNNGG 4 cut(s) 221, 247, 419, 937
BsmAI GTCTC 3 cut(s) 20, 697, 717
BsmBI CGTCTC 2 cut(s) 697, 717
BsnI GGCC 5 cut(s) 225, 709, 758, 930, 1238
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 3 cut(s) 182, 549, 823
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 2 cut(s) 759, 761
BspANI GGCC 5 cut(s) 225, 709, 758, 930, 1238
BspCNI CTCAG 3 cut(s) 53, 551, 1268
BspFNI CGCG 3 cut(s) 717, 761, 1251
BspHI TCATGA 1 cut(s) 1020
BspMI ACCTGC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 831
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 3 cut(s) 91, 497, 1267
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 262, 759
BssMI GATC 3 cut(s) 182, 549, 823
BssNI GRCGYC 1 cut(s) 896
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 31, 808
Bst6I CTCTTC 3 cut(s) 248, 666, 695
BstACI GRCGYC 1 cut(s) 896
BstAPI GCANNNNNTGC 2 cut(s) 731, 890
BstAUI TGTACA 1 cut(s) 801
BstC8I GCNNGC 3 cut(s) 223, 350, 1312
BstDEI CTNAG 3 cut(s) 40, 538, 1255
BstDSI CCRYGG 2 cut(s) 262, 759
BstF5I GGATG 2 cut(s) 532, 1038
BstFNI CGCG 3 cut(s) 717, 761, 1251
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 3 cut(s) 185, 552, 826
BstMAI GTCTC 3 cut(s) 20, 697, 717
BstMBI GATC 3 cut(s) 182, 549, 823
BstMCI CGRYCG 3 cut(s) 226, 710, 833
BstMWI GCNNNNNNNGC 7 cut(s) 361, 370, 503, 659, 731, 764, 890
BstPAI GACNNNNGTC 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 879
BstUI CGCG 3 cut(s) 717, 761, 1251
BstV1I GCAGC 6 cut(s) 339, 484, 554, 751, 896, 1030
BstV2I GAAGAC 1 cut(s) 1236
BstX2I RGATCY 2 cut(s) 182, 823
BstYI RGATCY 2 cut(s) 182, 823
BstZI CGGCCG 2 cut(s) 223, 707
BsuRI GGCC 5 cut(s) 225, 709, 758, 930, 1238
BtgI CCRYGG 2 cut(s) 262, 759
BtrI CACGTC 2 cut(s) 106, 523
BtsCI GGATG 2 cut(s) 532, 1038
BveI ACCTGC 1 cut(s) 1077
Cac8I GCNNGC 3 cut(s) 223, 350, 1312
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 1020
CfoI GCGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 221
Cfr42I CCGCGG 1 cut(s) 762
CseI GACGC 1 cut(s) 904
Csp6I GTAC 1 cut(s) 802
CviAII CATG 5 cut(s) 263, 1021, 1150, 1177, 1234
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 3 cut(s) 40, 538, 1255
DpnI GATC 3 cut(s) 184, 551, 825
DpnII GATC 3 cut(s) 182, 549, 823
EaeI YGGCCR 3 cut(s) 223, 707, 1236
EagI CGGCCG 2 cut(s) 223, 707
Eam1104I CTCTTC 3 cut(s) 248, 666, 695
EarI CTCTTC 3 cut(s) 248, 666, 695
EclXI CGGCCG 2 cut(s) 223, 707
Eco130I CCWWGG 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 20
Eco52I CGGCCG 2 cut(s) 223, 707
Eco88I CYCGRG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
Esp3I CGTCTC 2 cut(s) 697, 717
FaeI CATG 5 cut(s) 266, 1024, 1153, 1180, 1237
FatI CATG 5 cut(s) 262, 1020, 1149, 1176, 1233
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 8 cut(s) 353, 498, 543, 759, 762, 765, 885, 1044
FokI GGATG 2 cut(s) 539, 1045
Fsp4HI GCNGC 8 cut(s) 353, 498, 543, 759, 762, 765, 885, 1044
FspBI CTAG 2 cut(s) 23, 218
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 8 cut(s) 353, 498, 543, 759, 762, 765, 885, 1044
GsuI CTGGAG 2 cut(s) 836, 1250
HaeIII GGCC 5 cut(s) 225, 709, 758, 930, 1238
HapII CCGG 2 cut(s) 222, 880
HgaI GACGC 1 cut(s) 904
HhaI GCGC 1 cut(s) 1251
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 5 cut(s) 266, 1024, 1153, 1180, 1237
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 7 cut(s) 228, 234, 267, 288, 453, 1205, 1253
HpaII CCGG 2 cut(s) 222, 880
HphI GGTGA 6 cut(s) 47, 62, 310, 955, 1147, 1205
Hpy166II GTNNAC 3 cut(s) 109, 532, 804
Hpy188I TCNGA 7 cut(s) 233, 310, 337, 392, 597, 683, 1258
Hpy188III TCNNGA 4 cut(s) 86, 178, 992, 1021
Hpy8I GTNNAC 3 cut(s) 109, 532, 804
Hpy99I CGWCG 2 cut(s) 371, 898
HpyAV CCTTC 4 cut(s) 283, 566, 789, 1023
HpyCH4III ACNGT 2 cut(s) 31, 808
HpyCH4IV ACGT 5 cut(s) 105, 522, 609, 665, 1070
HpyCH4V TGCA 6 cut(s) 255, 500, 518, 767, 1046, 1086
HpyF10VI GCNNNNNNNGC 7 cut(s) 361, 370, 503, 659, 731, 764, 890
HpyF3I CTNAG 3 cut(s) 40, 538, 1255
HpySE526I ACGT 5 cut(s) 105, 522, 609, 665, 1070
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 5 cut(s) 266, 1024, 1153, 1180, 1237
HspAI GCGC 1 cut(s) 1249
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 762
Kzo9I GATC 3 cut(s) 182, 549, 823
LmnI GCTCC 2 cut(s) 103, 1006
Lsp1109I GCAGC 6 cut(s) 339, 484, 554, 751, 896, 1030
LweI GCATC 4 cut(s) 301, 451, 505, 687
MaeI CTAG 2 cut(s) 23, 218
MaeII ACGT 5 cut(s) 105, 522, 609, 665, 1070
MaeIII GTNAC 2 cut(s) 31, 68
MalI GATC 3 cut(s) 184, 551, 825
MboI GATC 3 cut(s) 182, 549, 823
MflI RGATCY 2 cut(s) 182, 823
MlsI TGGCCA 1 cut(s) 1238
MluCI AATT 2 cut(s) 986, 1170
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 5 cut(s) 237, 297, 447, 1214, 1247
Mox20I TGGCCA 1 cut(s) 1238
MroNI GCCGGC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 1238
MseI TTAA 3 cut(s) 200, 753, 1215
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 1238
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 2 cut(s) 222, 880
MspR9I CCNGG 1 cut(s) 881
MvnI CGCG 3 cut(s) 717, 761, 1251
MwoI GCNNNNNNNGC 7 cut(s) 361, 370, 503, 659, 731, 764, 890
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 262
NdeII GATC 3 cut(s) 182, 549, 823
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 5 cut(s) 266, 1024, 1153, 1180, 1237
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 285
PagI TCATGA 1 cut(s) 1020
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 234, 267
PkrI GCNGC 8 cut(s) 354, 499, 544, 760, 763, 766, 886, 1045
PleI GAGTC 5 cut(s) 236, 296, 447, 1213, 1247
PpsI GAGTC 5 cut(s) 236, 296, 447, 1213, 1247
PshAI GACNNNNGTC 1 cut(s) 709
Psp1406I AACGTT 1 cut(s) 1070
PspXI VCTCGAGB 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 2 cut(s) 182, 823
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 809
SacII CCGCGG 1 cut(s) 762
SaqAI TTAA 3 cut(s) 200, 753, 1215
SatI GCNGC 8 cut(s) 353, 498, 543, 759, 762, 765, 885, 1044
Sau3AI GATC 3 cut(s) 182, 549, 823
SchI GAGTC 5 cut(s) 237, 297, 447, 1214, 1247
ScrFI CCNGG 1 cut(s) 881
SfaNI GCATC 4 cut(s) 301, 451, 505, 687
Sfr274I CTCGAG 1 cut(s) 285
Sfr303I CCGCGG 1 cut(s) 762
SgrBI CCGCGG 1 cut(s) 762
SlaI CTCGAG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 2 cut(s) 176, 285
SmoI CTYRAG 2 cut(s) 176, 285
Sse9I AATT 2 cut(s) 986, 1170
SsiI CCGC 2 cut(s) 759, 761
SspMI CTAG 2 cut(s) 23, 218
StyD4I CCNGG 1 cut(s) 879
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 31, 808
TaiI ACGT 5 cut(s) 108, 525, 612, 668, 1073
TaqI TCGA 8 cut(s) 87, 286, 366, 548, 785, 833, 1076, 1245
TaqII GACCGA 1 cut(s) 819
TasI AATT 2 cut(s) 986, 1170
TatI WGTACW 1 cut(s) 801
TauI GCSGC 2 cut(s) 761, 764
TfiI GAWTC 2 cut(s) 234, 267
Tru1I TTAA 3 cut(s) 200, 753, 1215
Tru9I TTAA 3 cut(s) 200, 753, 1215
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 6 cut(s) 352, 497, 542, 764, 884, 1043
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 5 cut(s) 684, 713, 1009, 1165, 1166
TspGWI ACGGA 1 cut(s) 402
XapI RAATTY 1 cut(s) 986
XhoI CTCGAG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 23, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.