Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Reverse (-)

25056395 .. 25057723

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAAGATTGAAGTTGAAGTAATCACCAAAGAGACAATCAAACCATCTTCTCCAACCCCTCACCATCTCCACCACCACCAGCTCTCCTTTCTGGATCAATTAGCACCCCATGCCTATGTTCCTTTTCTCTACTTCTATGAATTCAATGGCTCCACAAACATCAATCAAATCTCCAACCTCCTCAAGACTTCTCTATCCAAAGTCTTGACCCAATACTACCCTTTTGCTGGGAGAGTCAGAAACAACCTTTTTGTTCACTGCAAAGACCAAGGCATCCCATTTTCTGAAGTTAAAGTCAAAACCCATCTGCTCTCTGATGTCATCACCAACCCCTGCCTCTCTGAGCTCCACAAACTGCTGCCATTCAAGCTGGATGAAGTCACAAAAACAGCCCTTGGTGTCCAGCTCAATGTGTTTGAATGTGGAGGAATTGCTGTTGGGTTATGCATCTCACACAGAATTGCAGACGGCCTCTCATGTTTTACATTTGTGAACAATTGGGCAGCTGCTTCTAATTGTGGACCGGGGAACAAAAATTCTATTGTGGGTCCAGATTTTTCTGCAGCTTCAATTTTCCCACCAAGAAATATGGATGGGTATTTAGGGGTTCCTATCACCAACAAGCATGAGATCAAAACCAAGATGTTTGTGTTTGATGCATCAAAGGTTGAGGCTTTGAGATCAAGATATGAACAGATCATCAAGGTCTCAAAAACCCAGAAACGGCCATCAAAAGTTGAGGCCTTGTCTGCTTTTTTATGGGACATCTTTGTTTTGTCAAGGCCTAGGGAAAGACCTCAAACGTTGTACGCAGTTGTTTATATCATGGATCTTCGTTCCAGGTTCAAGCCACCTCTGCCTCAGCATACTTTTGGAAATTATTACAGGGCTGCCATGGCAACTCCAACTCTGCCTACCGGTGAGAAGCATCATGGATTGGTGAGGCAGGTGATGGAGGAAATTGAGAAGATTGACAATAATTATATGAGGAAATTCCAAGAGGGGTATCAAGAACATCTGGATTTCATGAAGAAAAGAACGGAGAAGGCTGCAAAAGGAGAGCTGGTCACATTGACTTTTTCTAGTGTATGCAAGTTTCCTGTGTACGACGCAGATTTTGGTTGGGGAAGGCCTACATGGGTGAGCATGACTGCTATGCGTATCAGTAATCAAATAGTCTTCATGGACACCAGAAATGGTGATGGAATTGAGTCTTATTTTAGCTTGAAAGAGGAAGACATGGCCAAGTTCGAACATAACAAAGAGTTCACGGCGTTGCTTAGCTCCCCAATTGGTAATGTCAAGGAAAATCCACTTGCACGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

443

Amino Acids

50.25

Weight (kDa)

9.01

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	937
Acc36I	ACCTGC	1 cut(s)	937
AclI	AACGTT	1 cut(s)	803
AclWI	GGATC	2 cut(s)	102, 837
AcoI	YGGCCR	2 cut(s)	725, 1242
AcsI	RAATTY	3 cut(s)	140, 535, 992
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	809, 1106
AfiI	CCNNNNNNNGG	2 cut(s)	227, 723
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	8 cut(s)	11, 17, 145, 367, 419, 570, 847, 1228
AjiI	CACGTC	1 cut(s)	1322
AjnI	CCWGG	1 cut(s)	839
AluBI	AGCT	9 cut(s)	82, 346, 370, 406, 506, 566, 1063, 1224, 1284
AluI	AGCT	9 cut(s)	82, 346, 370, 406, 506, 566, 1063, 1224, 1284
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	26, 712
AlwI	GGATC	2 cut(s)	102, 837
AoxI	GGCC	6 cut(s)	469, 725, 741, 782, 1130, 1242
ApeKI	GCWGC	6 cut(s)	358, 503, 506, 563, 890, 1049
ApoI	RAATTY	3 cut(s)	140, 535, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
AsiGI	ACCGGT	1 cut(s)	917
AspA2I	CCTAGG	1 cut(s)	785
AspS9I	GGNCC	2 cut(s)	521, 548
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	9 cut(s)	16, 53, 316, 607, 932, 952, 961, 1153, 1211
AsuII	TTCGAA	1 cut(s)	1251
AvaII	GGWCC	2 cut(s)	521, 548
AvrII	CCTAGG	1 cut(s)	785
BalI	TGGCCA	1 cut(s)	1244
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	1171, 1242
Bbv12I	GWGCWC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	6 cut(s)	345, 493, 515, 575, 877, 1036
BccI	CCATC	7 cut(s)	52, 72, 312, 587, 736, 946, 1196
BceAI	ACGGC	3 cut(s)	484, 740, 1287
BciT130I	CCWGG	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	26, 712
BfaI	CTAG	2 cut(s)	786, 1083
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	937
BisI	GCNGC	6 cut(s)	359, 504, 507, 564, 891, 1050
BlnI	CCTAGG	1 cut(s)	785
BlpI	GCTNAGC	1 cut(s)	1280
BlsI	GCNGC	6 cut(s)	360, 505, 508, 565, 892, 1051
Bme1390I	CCNGG	2 cut(s)	525, 841
Bme18I	GGWCC	2 cut(s)	521, 548
BmgBI	CACGTC	1 cut(s)	1322
BmgT120I	GGNCC	2 cut(s)	521, 548
BmiI	GGNNCC	3 cut(s)	151, 549, 609
BmrFI	CCNGG	2 cut(s)	525, 841
BmsI	GCATC	5 cut(s)	282, 456, 646, 668, 937
BpiI	GAAGAC	2 cut(s)	1171, 1242
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	1280
Bpu14I	TTCGAA	1 cut(s)	1251
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	5 cut(s)	268, 394, 524, 785, 894
BsaWI	WCCGGW	1 cut(s)	917
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 1050, 1080
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 723
Bse118I	RCCGGY	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	841
BseDI	CCNNGG	5 cut(s)	268, 394, 524, 785, 894
BseGI	GGATG	3 cut(s)	273, 379, 598
BseLI	CCNNNNNNNGG	2 cut(s)	227, 723
BseMII	CTCAG	2 cut(s)	333, 875
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	6 cut(s)	345, 493, 515, 575, 877, 1036
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	6 cut(s)	471, 727, 743, 784, 1132, 1244
BshTI	ACCGGT	1 cut(s)	917
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	524, 918
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	227, 723
BsmAI	GTCTC	2 cut(s)	26, 712
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	6 cut(s)	471, 727, 743, 784, 1132, 1244
Bso31I	GGTCTC	1 cut(s)	712
Bsp119I	TTCGAA	1 cut(s)	1251
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	5 cut(s)	94, 630, 680, 696, 829
Bsp1720I	GCTNAGC	1 cut(s)	1280
Bsp19I	CCATGG	1 cut(s)	894
BspANI	GGCC	6 cut(s)	471, 727, 743, 784, 1132, 1244
BspCNI	CTCAG	2 cut(s)	334, 874
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	3 cut(s)	151, 549, 609
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	2 cut(s)	102, 837
BspT104I	TTCGAA	1 cut(s)	1251
BspTNI	GGTCTC	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	917
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	5 cut(s)	268, 394, 524, 785, 894
BssMI	GATC	5 cut(s)	94, 630, 680, 696, 829
BssT1I	CCWWGG	4 cut(s)	268, 394, 785, 894
Bst2UI	CCWGG	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	1251
BstDEI	CTNAG	3 cut(s)	342, 861, 1280
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	3 cut(s)	273, 379, 598
BstKTI	GATC	5 cut(s)	97, 633, 683, 699, 832
BstMAI	GTCTC	2 cut(s)	26, 712
BstMBI	GATC	5 cut(s)	94, 630, 680, 696, 829
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 367, 749, 856, 896
BstNI	CCWGG	1 cut(s)	841
BstSCI	CCNGG	2 cut(s)	523, 839
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	6 cut(s)	345, 493, 515, 575, 877, 1036
BstV2I	GAAGAC	2 cut(s)	1171, 1242
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	6 cut(s)	471, 727, 743, 784, 1132, 1244
BtgI	CCRYGG	1 cut(s)	894
BtrI	CACGTC	1 cut(s)	1322
BtsCI	GGATG	3 cut(s)	273, 379, 598
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	937
CciI	TCATGA	1 cut(s)	1026
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	2 cut(s)	521, 548
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	2 cut(s)	808, 1105
CspAI	ACCGGT	1 cut(s)	917
CviQI	GTAC	2 cut(s)	808, 1105
DdeI	CTNAG	3 cut(s)	342, 861, 1280
DpnI	GATC	5 cut(s)	96, 632, 682, 698, 831
DpnII	GATC	5 cut(s)	94, 630, 680, 696, 829
EaeI	YGGCCR	2 cut(s)	725, 1242
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	4 cut(s)	268, 394, 785, 894
Eco147I	AGGCCT	3 cut(s)	743, 784, 1132
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	521, 548
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	839
EcoT14I	CCWWGG	4 cut(s)	268, 394, 785, 894
EcoT22I	ATGCAT	2 cut(s)	449, 661
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	4 cut(s)	268, 394, 785, 894
FaqI	GGGAC	1 cut(s)	776
Fnu4HI	GCNGC	6 cut(s)	359, 504, 507, 564, 891, 1050
FokI	GGATG	3 cut(s)	260, 386, 605
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	6 cut(s)	359, 504, 507, 564, 891, 1050
FspBI	CTAG	2 cut(s)	786, 1083
GluI	GCNGC	6 cut(s)	359, 504, 507, 564, 891, 1050
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	6 cut(s)	471, 727, 743, 784, 1132, 1244
HapII	CCGG	2 cut(s)	524, 918
HgaI	GACGC	1 cut(s)	1118
HinfI	GANTC	2 cut(s)	234, 1211
HpaII	CCGG	2 cut(s)	524, 918
HphI	GGTGA	9 cut(s)	16, 53, 316, 607, 932, 952, 961, 1153, 1211
Hpy166II	GTNNAC	5 cut(s)	256, 493, 521, 1105, 1269
Hpy188I	TCNGA	4 cut(s)	239, 286, 316, 343
Hpy188III	TCNNGA	8 cut(s)	92, 184, 205, 551, 684, 1010, 1019, 1027
Hpy8I	GTNNAC	5 cut(s)	256, 493, 521, 1105, 1269
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	2 cut(s)	1039, 1122
HpyCH4IV	ACGT	2 cut(s)	803, 1321
HpyCH4V	TGCA	8 cut(s)	261, 447, 464, 563, 659, 1052, 1092, 1319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 367, 749, 856, 896
HpyF3I	CTNAG	3 cut(s)	342, 861, 1280
HpySE526I	ACGT	2 cut(s)	803, 1321
Kzo9I	GATC	5 cut(s)	94, 630, 680, 696, 829
LmnI	GCTCC	3 cut(s)	155, 351, 1289
Lsp1109I	GCAGC	6 cut(s)	345, 493, 515, 575, 877, 1036
LweI	GCATC	5 cut(s)	282, 456, 646, 668, 937
MaeI	CTAG	2 cut(s)	786, 1083
MaeII	ACGT	2 cut(s)	803, 1321
MaeIII	GTNAC	2 cut(s)	379, 1066
MalI	GATC	5 cut(s)	96, 632, 682, 698, 831
MboI	GATC	5 cut(s)	94, 630, 680, 696, 829
MboII	GAAGA	7 cut(s)	16, 39, 824, 979, 1042, 1171, 1247
MfeI	CAATTG	2 cut(s)	496, 1290
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	1244
MluNI	TGGCCA	1 cut(s)	1244
MlyI	GAGTC	2 cut(s)	243, 1220
MmeI	TCCRAC	3 cut(s)	77, 198, 929
Mox20I	TGGCCA	1 cut(s)	1244
Mph1103I	ATGCAT	2 cut(s)	449, 661
MscI	TGGCCA	1 cut(s)	1244
MseI	TTAA	2 cut(s)	291, 1327
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	1244
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	2 cut(s)	524, 918
MspR9I	CCNGG	2 cut(s)	525, 841
MunI	CAATTG	2 cut(s)	496, 1290
MvaI	CCWGG	1 cut(s)	841
MwoI	GCNNNNNNNGC	5 cut(s)	110, 367, 749, 856, 896
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	894
NdeII	GATC	5 cut(s)	94, 630, 680, 696, 829
NlaIV	GGNNCC	3 cut(s)	151, 549, 609
NmuCI	GTSAC	2 cut(s)	379, 1066
NsiI	ATGCAT	2 cut(s)	449, 661
NspV	TTCGAA	1 cut(s)	1251
PagI	TCATGA	1 cut(s)	1026
PaqCI	CACCTGC	1 cut(s)	937
PceI	AGGCCT	3 cut(s)	743, 784, 1132
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	6 cut(s)	360, 505, 508, 565, 892, 1051
PleI	GAGTC	2 cut(s)	242, 1219
PpsI	GAGTC	2 cut(s)	242, 1219
Psp124BI	GAGCTC	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	839
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	839
PspN4I	GGNNCC	3 cut(s)	151, 549, 609
PspPI	GGNCC	2 cut(s)	521, 548
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	809, 1106
RsaNI	GTAC	2 cut(s)	808, 1105
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	291, 1327
SatI	GCNGC	6 cut(s)	359, 504, 507, 564, 891, 1050
Sau3AI	GATC	5 cut(s)	94, 630, 680, 696, 829
Sau96I	GGNCC	2 cut(s)	521, 548
SchI	GAGTC	2 cut(s)	243, 1220
ScrFI	CCNGG	2 cut(s)	525, 841
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	5 cut(s)	282, 456, 646, 668, 937
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	1251
SinI	GGWCC	2 cut(s)	521, 548
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SseBI	AGGCCT	3 cut(s)	743, 784, 1132
SspMI	CTAG	2 cut(s)	786, 1083
SstI	GAGCTC	1 cut(s)	348
StuI	AGGCCT	3 cut(s)	743, 784, 1132
StyD4I	CCNGG	2 cut(s)	523, 839
StyI	CCWWGG	4 cut(s)	268, 394, 785, 894
TaiI	ACGT	2 cut(s)	806, 1324
TaqI	TCGA	1 cut(s)	1251
Tru1I	TTAA	2 cut(s)	291, 1327
Tru9I	TTAA	2 cut(s)	291, 1327
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	2 cut(s)	379, 1066
TseI	GCWGC	6 cut(s)	358, 503, 506, 563, 890, 1049
Tsp45I	GTSAC	2 cut(s)	379, 1066
TspDTI	ATGAA	7 cut(s)	17, 153, 390, 705, 1015, 1043, 1171
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	521, 548
XapI	RAATTY	3 cut(s)	140, 535, 992
XmaJI	CCTAGG	1 cut(s)	785
XspI	CTAG	2 cut(s)	786, 1083
Zsp2I	ATGCAT	2 cut(s)	449, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.