Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001459.1

Orthogroup ID

OG0008131

Physical Location & Seq

Genomic Coordinates Forward (+)

65551 .. 66870

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001459.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgaagattgaagttgaagttatctctcaagaaacaataaaaccttcaactccaacccctcaccatctccaccatcaccagctctcctttctcgaccagttagctccccacgcctacgtccctttcctctacttctactccctccccgatactcacaacaaccacacccaaatctccacccacctcaagaaatctctctccaaaatcctaacccagtactacccaatagccggccgagtcaaattcaacctctttgtggattgcaacgaccatggaatccccttctacgaagctcgagtcaaatcccactcactctctgatgtcatcaccaatccctccctccccgaattgaacaagttgttacctttcgagctcgacgtgatcacagacatagctctcggagttcaactgaatctgtttccgtgcggaggaattgctattgggttgtgcgcttcgcatcgaattgcagatgcgttgtcatttttcacgtttgtcaagaactgggcatcaacttcttgtggaaatgagtgtgtgaatccggatttttctgcagcttcgatcttccctccaaagaatatggatgggtataacggcgttcctctcccgaaaaggaaagatattgtgaccaagaggtttgtgtttgatgggtcgaagatcgaagctttacgagcaacgtatgcagagagcatcagactgaagaccaagaaacgcccgtctcgggttgaggcgttgtctgccttcttgtggaacaggtttatggccgaggttgcaaaagaagaagaatcaagttcaagaaggttgtacacggttgtgtatattatggatctccgttcgaggtttgactcacctctgccgcagaatagttttgggaactattaccgggcagccactgcaactccaacattgattaatggggaggagagaggtgtccttgtgaggcaggtgattgaggaaatagagaagattgatagtaagtatatgaggaaatttcaagatggctataaggaacatttggatttcatgaggagaaggatggaaagggctgcaaaaggagagcttgttacagtgacgttttcgagtctctgcaggtttccattgtatgaggctgattttggttgggggaagccagcgtgggtgagcatggcttccatgagaatcaacaaccaaatagttttcatggacaccaaattggctgatggaatagagtcgtattttagcttcaaggaggaagacatggccaagtttgaacttgactcagagttcctccggttgatttctccaattggtaatgtcaagaaaaatccatttgcacgtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

439

Amino Acids

50.18

Weight (kDa)

8.69

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008131)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24670 FvH4_5g06140
malus_domestica	MD13G1109400.v1.1 MD16G1109100.v1.1
prunus_persica	Prupe.1G236400_v2.0.a1
pyrus_communis	pycom13g09520
rosa_chinensis	RchiOBHm_Chr4g0431791 RchiOBHm_Chr7g0192651
rosa_laevigata	RLG00000004338 RLG00000006889
rosa_multiflora	Rmu_sc0001459.1_g000017 Rmu_sc0002040.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262800
rosa_rugosa	Rorug04G0252400 Rorug07G0003600
rosa_samantha	Rh4AG308900 Rh4BG316600 Rh5AG177700 Rh7AG128500
rosa_wichuraiana	Rw0G003010 Rw4G026790 Rw4G026850 Rw5G016090 Rw7G010990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	931
Acc36I	ACCTGC	2 cut(s)	931, 1077
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	426, 854
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	3 cut(s)	232, 759, 1236
AcsI	RAATTY	2 cut(s)	242, 986
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	218, 803
AfiI	CCNNNNNNNGG	5 cut(s)	230, 256, 428, 718, 744
AjiI	CACGTC	2 cut(s)	379, 1313
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	9 cut(s)	82, 104, 293, 373, 395, 554, 662, 1057, 1218
AluI	AGCT	9 cut(s)	82, 104, 293, 373, 395, 554, 662, 1057, 1218
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	720, 1085
AlwI	GGATC	1 cut(s)	831
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	2 cut(s)	294, 717
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	3 cut(s)	232, 759, 1236
ApeKI	GCWGC	3 cut(s)	551, 884, 1043
ApoI	RAATTY	2 cut(s)	242, 986
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AseI	ATTAAT	1 cut(s)	909
AspLEI	GCGC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	6 cut(s)	53, 68, 319, 837, 955, 1147
AvaI	CYCGRG	2 cut(s)	294, 717
BalI	TGGCCA	1 cut(s)	1238
BanII	GRGCYC	1 cut(s)	375
BarI	GAAGNNNNNNTAC	2 cut(s)	1202, 1234
BbsI	GAAGAC	2 cut(s)	704, 1236
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	563, 896, 1030
BccI	CCATC	7 cut(s)	72, 81, 575, 638, 989, 1027, 1190
BceAI	ACGGC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	2 cut(s)	720, 1085
BfmI	CTRYAG	2 cut(s)	549, 1084
BfuAI	ACCTGC	2 cut(s)	931, 1077
BisI	GCNGC	4 cut(s)	552, 854, 885, 1044
BlsI	GCNGC	4 cut(s)	553, 855, 886, 1045
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	294, 717
BmgBI	CACGTC	2 cut(s)	379, 1313
BmrFI	CCNGG	1 cut(s)	881
BmrI	ACTGGG	2 cut(s)	208, 511
BmsI	GCATC	4 cut(s)	460, 466, 515, 696
BmuI	ACTGGG	2 cut(s)	208, 511
BpiI	GAAGAC	2 cut(s)	704, 1236
BpuEI	CTTGAG	2 cut(s)	12, 170
BpuMI	CCSGG	1 cut(s)	881
BsaJI	CCNNGG	2 cut(s)	271, 762
BsaWI	WCCGGW	2 cut(s)	538, 1266
BsaXI	ACNNNNNCTCC	8 cut(s)	68, 98, 122, 152, 880, 910, 1044, 1074
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 256, 428, 718, 744
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	3 cut(s)	97, 214, 506
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	271, 762
BseGI	GGATG	2 cut(s)	586, 1038
BseLI	CCNNNNNNNGG	5 cut(s)	230, 256, 428, 718, 744
BseMII	CTCAG	1 cut(s)	1269
BseNI	ACTGG	3 cut(s)	97, 214, 506
BseRI	GAGGAG	2 cut(s)	932, 1039
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	563, 896, 1030
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	234, 761, 1238
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	294, 717
BsiSI	CCGG	4 cut(s)	231, 539, 880, 1267
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	5 cut(s)	230, 256, 428, 718, 744
BsmAI	GTCTC	2 cut(s)	720, 1085
BsmBI	CGTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	234, 761, 1238
BsoBI	CYCGRG	2 cut(s)	294, 717
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	4 cut(s)	381, 558, 654, 823
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	426, 854
BspANI	GGCC	3 cut(s)	234, 761, 1238
BspCNI	CTCAG	1 cut(s)	1268
BspEI	TCCGGA	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	1020
BspMAI	CTGCAG	2 cut(s)	553, 1088
BspMI	ACCTGC	2 cut(s)	931, 1077
BspPI	GGATC	1 cut(s)	831
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	97, 214, 506
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	271, 762
BssMI	GATC	4 cut(s)	381, 558, 654, 823
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	808, 1066
BstAPI	GCANNNNNTGC	2 cut(s)	677, 890
BstAUI	TGTACA	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	232, 1128
BstDEI	CTNAG	1 cut(s)	1255
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	586, 1038
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	384, 561, 657, 826
BstMAI	GTCTC	2 cut(s)	720, 1085
BstMBI	GATC	4 cut(s)	381, 558, 654, 823
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 668, 677, 734, 767, 890
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	2 cut(s)	549, 1084
BstV1I	GCAGC	3 cut(s)	563, 896, 1030
BstV2I	GAAGAC	2 cut(s)	704, 1236
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	234, 761, 1238
BtgI	CCRYGG	1 cut(s)	271
BtrI	CACGTC	2 cut(s)	379, 1313
BtsCI	GGATG	2 cut(s)	586, 1038
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	2 cut(s)	888, 1071
BveI	ACCTGC	2 cut(s)	931, 1077
Cac8I	GCNNGC	2 cut(s)	232, 1128
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	217, 802
CviAII	CATG	6 cut(s)	272, 1021, 1141, 1150, 1177, 1234
CviQI	GTAC	2 cut(s)	217, 802
DdeI	CTNAG	1 cut(s)	1255
DpnI	GATC	4 cut(s)	383, 560, 656, 825
DpnII	GATC	4 cut(s)	381, 558, 654, 823
EaeI	YGGCCR	3 cut(s)	232, 759, 1236
EagI	CGGCCG	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	716
Eco88I	CYCGRG	2 cut(s)	294, 717
EcoICRI	GAGCTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	6 cut(s)	275, 1024, 1144, 1153, 1180, 1237
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	271, 1020, 1140, 1149, 1176, 1233
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	552, 854, 885, 1044
FokI	GGATG	2 cut(s)	593, 1045
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	552, 854, 885, 1044
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	4 cut(s)	552, 854, 885, 1044
HaeIII	GGCC	3 cut(s)	234, 761, 1238
HapII	CCGG	4 cut(s)	231, 539, 880, 1267
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	6 cut(s)	275, 1024, 1144, 1153, 1180, 1237
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	660
HpaII	CCGG	4 cut(s)	231, 539, 880, 1267
HphI	GGTGA	6 cut(s)	53, 68, 319, 837, 955, 1147
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	4 cut(s)	319, 401, 692, 1258
Hpy8I	GTNNAC	1 cut(s)	804
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	5 cut(s)	54, 292, 748, 789, 1023
HpyCH4III	ACNGT	2 cut(s)	808, 1066
HpyCH4IV	ACGT	6 cut(s)	117, 378, 488, 674, 1070, 1312
HpyCH4V	TGCA	9 cut(s)	264, 467, 551, 680, 770, 893, 1046, 1086, 1310
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 668, 677, 734, 767, 890
HpyF3I	CTNAG	1 cut(s)	1255
HpySE526I	ACGT	6 cut(s)	117, 378, 488, 674, 1070, 1312
Hsp92II	CATG	6 cut(s)	275, 1024, 1144, 1153, 1180, 1237
HspAI	GCGC	1 cut(s)	450
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	381, 558, 654, 823
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	563, 896, 1030
LweI	GCATC	4 cut(s)	460, 466, 515, 696
MaeII	ACGT	6 cut(s)	117, 378, 488, 674, 1070, 1312
MaeIII	GTNAC	4 cut(s)	360, 622, 1060, 1066
MalI	GATC	4 cut(s)	383, 560, 656, 825
MboI	GATC	4 cut(s)	381, 558, 654, 823
MboII	GAAGA	8 cut(s)	16, 553, 664, 709, 788, 791, 973, 1241
MfeI	CAATTG	1 cut(s)	1281
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	1238
MluCI	AATT	7 cut(s)	242, 347, 432, 462, 986, 1187, 1281
MluNI	TGGCCA	1 cut(s)	1238
MlyI	GAGTC	6 cut(s)	246, 306, 836, 1087, 1214, 1247
MmeI	TCCRAC	2 cut(s)	77, 923
Mox20I	TGGCCA	1 cut(s)	1238
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	1238
MseI	TTAA	2 cut(s)	909, 1318
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	1 cut(s)	1238
MspI	CCGG	4 cut(s)	231, 539, 880, 1267
MspR9I	CCNGG	1 cut(s)	881
MunI	CAATTG	1 cut(s)	1281
MwoI	GCNNNNNNNGC	6 cut(s)	110, 668, 677, 734, 767, 890
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	881
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	381, 558, 654, 823
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	6 cut(s)	275, 1024, 1144, 1153, 1180, 1237
NmeAIII	GCCGAG	2 cut(s)	260, 787
NmuCI	GTSAC	2 cut(s)	622, 1066
OliI	CACNNNNGTG	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	1020
PaqCI	CACCTGC	1 cut(s)	931
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	5 cut(s)	276, 412, 535, 782, 1155
PkrI	GCNGC	4 cut(s)	553, 855, 886, 1045
PleI	GAGTC	6 cut(s)	245, 305, 836, 1086, 1213, 1247
PpsI	GAGTC	6 cut(s)	245, 305, 836, 1086, 1213, 1247
PshBI	ATTAAT	1 cut(s)	909
Psp124BI	GAGCTC	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	294
PstI	CTGCAG	2 cut(s)	553, 1088
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	2 cut(s)	218, 803
RsaNI	GTAC	2 cut(s)	217, 802
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	909, 1318
SatI	GCNGC	4 cut(s)	552, 854, 885, 1044
Sau3AI	GATC	4 cut(s)	381, 558, 654, 823
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	6 cut(s)	246, 306, 836, 1087, 1214, 1247
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	460, 466, 515, 696
SfcI	CTRYAG	2 cut(s)	549, 1084
Sfr274I	CTCGAG	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	3 cut(s)	27, 185, 294
SmoI	CTYRAG	3 cut(s)	27, 185, 294
Sse9I	AATT	7 cut(s)	242, 347, 432, 462, 986, 1187, 1281
SsiI	CCGC	2 cut(s)	426, 854
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	808, 1066
TaiI	ACGT	6 cut(s)	120, 381, 491, 677, 1073, 1315
TasI	AATT	7 cut(s)	242, 347, 432, 462, 986, 1187, 1281
TatI	WGTACW	2 cut(s)	216, 801
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	5 cut(s)	276, 412, 535, 782, 1155
Tru1I	TTAA	2 cut(s)	909, 1318
Tru9I	TTAA	2 cut(s)	909, 1318
TscAI	CASTG	2 cut(s)	895, 1071
TseFI	GTSAC	2 cut(s)	622, 1066
TseI	GCWGC	3 cut(s)	551, 884, 1043
Tsp45I	GTSAC	2 cut(s)	622, 1066
TspDTI	ATGAA	3 cut(s)	17, 1009, 1165
TspGWI	ACGGA	2 cut(s)	411, 818
TspRI	CASTG	2 cut(s)	895, 1071
VspI	ATTAAT	1 cut(s)	909
XapI	RAATTY	2 cut(s)	242, 986
XhoI	CTCGAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.