Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Reverse (-)

33695449 .. 33697935

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGACTCTTCCTTTCTGCCCAGTCAACTTCGCCCGACCTGGCTCCGTCTCTCTTGTTGACTTCTCTTTCAACACTCGACCTTTCCCAACTTCCATCAGAAAACAAAGCCTCGGGATCACACGAGCCTCTGTCGCAGTCGAGACCCAGAATCCCAAACTGGCTCTCATCAAAATCGGCACCAGAGGAAGCCCACTAGCACTTGCTCAAGCTTATCAGACAAAAGACAAGCTCATTGCATCGCATCCCCATCTAGCTGAAGACGGGGCGATTGAGATTGTCATTATCAAAACTACTGGTGATAAGATTCTAAGCCAGCCCCTTGCAGACATAGGCGGCAAGGGATTGTTCACTAAGGAAATCGATGAGGCATTGATAAATGGTGATGTTGACATTGCGGTGCACTCGATGAAAGATGTTCCTACTTACTTACCAGACAAGACAATTCTGCCTTGCAACCTTCCTCGTGAGGATGTTCGTGACGCCTTTATCTGCTTAACTGCATCTTCACTTGCAGACCTGCCAGCTGGGAGTGTTATTGGCACTGCCTCGCTGAGACGAAAGTCGCAGATACTCCATAGATTTCCCTCCCTCAAAGTGGAGGAGAACTTTAGGGGTAATGTCCAGACTAGATTGAAGAAGCTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTCAAACGCCTAAACATGACGGAGAATGTAACTTCCATTCTCTCACTAGACGAAATGCTTCCTGCTGTTGCCCAAGGGGCAATTGGAATTGCCTGCCGAAGCAATGATGATAAAATGGCTGAGTACATAGATAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTAGTGGCTTCCCCTGACGGAACCCGTGTACTTGAGACGTCTAGGAAAGGCCCATACACTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGGAGGAACTTCTTAAACTGGCAGGTCCTGGTTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

365

Amino Acids

39.36

Weight (kDa)

7.54

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	57 - 269	8.5e-79	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	282 - 355	6.7e-15	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1017
AatII	GACGTC	1 cut(s)	995
Acc36I	ACCTGC	2 cut(s)	528, 1061
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	336, 398
AclWI	GGATC	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	2 cut(s)	483, 992
AfaI	GTAC	2 cut(s)	812, 984
AfiI	CCNNNNNNNGG	3 cut(s)	598, 885, 908
AgsI	TTSAA	4 cut(s)	73, 637, 826, 949
AjnI	CCWGG	3 cut(s)	40, 879, 1075
AluBI	AGCT	7 cut(s)	212, 232, 257, 527, 643, 665, 683
AluI	AGCT	7 cut(s)	212, 232, 257, 527, 643, 665, 683
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	4 cut(s)	55, 137, 550, 983
Alw44I	GTGCAC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	1076
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	1003
ApaLI	GTGCAC	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	744
AspS9I	GGNCC	2 cut(s)	1004, 1073
AsuHPI	GGTGA	2 cut(s)	311, 395
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	1073
BaeGI	GKGCMC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	690
BauI	CACGAG	2 cut(s)	123, 465
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	405
BccI	CCATC	5 cut(s)	104, 258, 878, 926, 1021
BciT130I	CCWGG	3 cut(s)	42, 881, 1077
BcoDI	GTCTC	4 cut(s)	55, 137, 550, 983
BfaI	CTAG	6 cut(s)	197, 254, 630, 734, 845, 996
BfuAI	ACCTGC	2 cut(s)	528, 1061
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	3 cut(s)	42, 881, 1077
Bme18I	GGWCC	1 cut(s)	1073
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	1004, 1073
BmiI	GGNNCC	3 cut(s)	46, 181, 976
BmrFI	CCNGG	3 cut(s)	42, 881, 1077
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	5 cut(s)	248, 253, 512, 916, 1033
BmuI	ACTGGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	192, 1007
Bsa29I	ATCGAT	1 cut(s)	363
BsaHI	GRCGYC	2 cut(s)	483, 992
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	112, 760, 879
Bsc4I	CCNNNNNNNGG	3 cut(s)	598, 885, 908
Bse1I	ACTGG	4 cut(s)	23, 165, 301, 1071
Bse3DI	GCAATG	3 cut(s)	234, 393, 796
BseBI	CCWGG	3 cut(s)	42, 881, 1077
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	112, 760, 879
BseGI	GGATG	4 cut(s)	244, 478, 889, 1048
BseLI	CCNNNNNNNGG	3 cut(s)	598, 885, 908
BseMI	GCAATG	3 cut(s)	234, 393, 796
BseMII	CTCAG	2 cut(s)	545, 798
BseNI	ACTGG	4 cut(s)	23, 165, 301, 1071
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	405
BseYI	CCCAGC	2 cut(s)	527, 683
BshFI	GGCC	1 cut(s)	1005
BshNI	GGYRCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	598, 885, 908
BsmAI	GTCTC	4 cut(s)	55, 137, 550, 983
BsmBI	CGTCTC	3 cut(s)	55, 550, 983
BsnI	GGCC	1 cut(s)	1005
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	405, 690
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	336, 398
BspANI	GGCC	1 cut(s)	1005
BspCNI	CTCAG	2 cut(s)	546, 799
BspDI	ATCGAT	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	46, 181, 976
BspMI	ACCTGC	2 cut(s)	528, 1061
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	3 cut(s)	234, 393, 796
BsrI	ACTGG	4 cut(s)	23, 165, 301, 1071
BssECI	CCNNGG	3 cut(s)	112, 760, 879
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	2 cut(s)	483, 992
BssSI	CACGAG	2 cut(s)	123, 465
BssT1I	CCWWGG	1 cut(s)	760
Bst2BI	CACGAG	2 cut(s)	123, 465
Bst2UI	CCWGG	3 cut(s)	42, 881, 1077
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	2 cut(s)	483, 992
BstC8I	GCNNGC	4 cut(s)	317, 525, 781, 919
BstDEI	CTNAG	5 cut(s)	311, 354, 554, 807, 955
BstF5I	GGATG	4 cut(s)	244, 478, 889, 1048
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	4 cut(s)	55, 137, 550, 983
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 764, 914
BstNI	CCWGG	3 cut(s)	42, 881, 1077
BstNSI	RCATGY	1 cut(s)	858
BstPAI	GACNNNNGTC	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	40, 879, 1075
BstSLI	GKGCMC	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	1005
BsuTUI	ATCGAT	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	4 cut(s)	244, 478, 889, 1048
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	2 cut(s)	528, 1061
Cac8I	GCNNGC	4 cut(s)	317, 525, 781, 919
CaiI	CAGNNNCTG	1 cut(s)	1076
CciI	TCATGA	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	1004, 1073
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	811, 983
CviAII	CATG	3 cut(s)	703, 830, 855
CviQI	GTAC	2 cut(s)	811, 983
DdeI	CTNAG	5 cut(s)	311, 354, 554, 807, 955
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	1073
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	1073
EcoRII	CCWGG	3 cut(s)	40, 879, 1075
EcoT14I	CCWWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	760
Esp3I	CGTCTC	3 cut(s)	55, 550, 983
FaeI	CATG	3 cut(s)	706, 833, 858
FatI	CATG	3 cut(s)	702, 829, 854
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	4 cut(s)	231, 485, 896, 1055
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	6 cut(s)	197, 254, 630, 734, 845, 996
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	2 cut(s)	531, 687
HaeIII	GGCC	1 cut(s)	1005
HgaI	GACGC	1 cut(s)	491
Hin1I	GRCGYC	2 cut(s)	483, 992
Hin1II	CATG	3 cut(s)	706, 833, 858
HincII	GTYRAC	3 cut(s)	28, 61, 391
HindII	GTYRAC	3 cut(s)	28, 61, 391
HindIII	AAGCTT	2 cut(s)	210, 641
HinfI	GANTC	4 cut(s)	7, 151, 307, 826
HphI	GGTGA	2 cut(s)	311, 395
Hpy166II	GTNNAC	6 cut(s)	28, 61, 351, 391, 403, 983
Hpy188I	TCNGA	2 cut(s)	101, 219
Hpy188III	TCNNGA	6 cut(s)	115, 142, 467, 479, 625, 830
Hpy8I	GTNNAC	6 cut(s)	28, 61, 351, 391, 403, 983
HpyAV	CCTTC	2 cut(s)	470, 646
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	9 cut(s)	239, 326, 403, 456, 503, 515, 854, 942, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 764, 914
HpyF3I	CTNAG	5 cut(s)	311, 354, 554, 807, 955
HpySE526I	ACGT	1 cut(s)	992
Hsp92I	GRCGYC	2 cut(s)	483, 992
Hsp92II	CATG	3 cut(s)	706, 833, 858
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	5 cut(s)	248, 253, 512, 916, 1033
MaeI	CTAG	6 cut(s)	197, 254, 630, 734, 845, 996
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	3 cut(s)	479, 715, 935
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	4 cut(s)	272, 498, 649, 845
MfeI	CAATTG	1 cut(s)	768
MhlI	GDGCHC	2 cut(s)	405, 690
MluCI	AATT	4 cut(s)	444, 768, 774, 821
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	4 cut(s)	497, 645, 1062, 1093
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	3 cut(s)	42, 881, 1077
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	3 cut(s)	42, 881, 1077
MwoI	GCNNNNNNNGC	3 cut(s)	134, 764, 914
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	706, 833, 858
NlaIV	GGNNCC	3 cut(s)	46, 181, 976
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	858
PagI	TCATGA	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	151, 307, 826
PkrI	GCNGC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	1073
PshAI	GACNNNNGTC	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	1017
Psp5II	RGGWCCY	1 cut(s)	1073
Psp6I	CCWGG	3 cut(s)	40, 879, 1075
PspFI	CCCAGC	2 cut(s)	527, 683
PspGI	CCWGG	3 cut(s)	40, 879, 1075
PspN4I	GGNNCC	3 cut(s)	46, 181, 976
PspPI	GGNCC	2 cut(s)	1004, 1073
PspPPI	RGGWCCY	1 cut(s)	1073
PstNI	CAGNNNCTG	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	812, 984
RsaNI	GTAC	2 cut(s)	811, 983
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	497, 645, 1062, 1093
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	1004, 1073
ScrFI	CCNGG	3 cut(s)	42, 881, 1077
SduI	GDGCHC	2 cut(s)	405, 690
SfaNI	GCATC	5 cut(s)	248, 253, 512, 916, 1033
SinI	GGWCC	1 cut(s)	1073
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	207, 986
SmoI	CTYRAG	2 cut(s)	207, 986
Sse9I	AATT	4 cut(s)	444, 768, 774, 821
SsiI	CCGC	2 cut(s)	336, 398
SspMI	CTAG	6 cut(s)	197, 254, 630, 734, 845, 996
StyD4I	CCNGG	3 cut(s)	40, 879, 1075
StyI	CCWWGG	1 cut(s)	760
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	4 cut(s)	79, 141, 363, 407
TasI	AATT	4 cut(s)	444, 768, 774, 821
TatI	WGTACW	2 cut(s)	810, 982
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	151, 307, 826
Tru1I	TTAA	4 cut(s)	497, 645, 1062, 1093
Tru9I	TTAA	4 cut(s)	497, 645, 1062, 1093
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	425, 846
TspGWI	ACGGA	3 cut(s)	37, 722, 987
TspRI	CASTG	1 cut(s)	550
VneI	GTGCAC	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	1073
XceI	RCATGY	1 cut(s)	858
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	6 cut(s)	197, 254, 630, 734, 845, 996
ZraI	GACGTC	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.