Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Reverse (-)

13933040 .. 13933620

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATTTGTTTTCTGAAAGCTGTTCGTGATGGAGAGCATGTTTTTGGTGTTGCTCACATCTTTGCCTCCTTCAATGATACCATCATTAGTTGTGCTCTGCTGGACAAGTCAGTGGACTCTAGCGAGCCGACGGAGTCGGTGTTTGAGTTGTCTAAGAGCAAAGAGGAGAAGGCAGGGGTGAAGGAGTGGAAGCCGCCGGAGGTGAAGCCCAGGAGAGCATCAGGGGTGAAGATTGTGACCGGTTTGGCTTCAGTCATGGAGGATGAAAATTGGATTTTGATCCTTCTTTTTCACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

5.57

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	274
AsiGI	ACCGGT	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	190, 214, 238
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	2 cut(s)	23, 89
BciT130I	CCWGG	1 cut(s)	211
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 125, 155
Bse118I	RCCGGY	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	197, 240
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	2 cut(s)	38, 256
CviJI	RGCY	5 cut(s)	20, 127, 193, 208, 248
CviKI_1	RGCY	5 cut(s)	20, 127, 193, 208, 248
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	2 cut(s)	41, 259
FaiI	YATR	2 cut(s)	39, 257
FatI	CATG	2 cut(s)	37, 255
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	194
HapII	CCGG	2 cut(s)	197, 240
Hin1II	CATG	2 cut(s)	41, 259
HinfI	GANTC	2 cut(s)	116, 134
HpaII	CCGG	2 cut(s)	197, 240
HphI	GGTGA	3 cut(s)	190, 214, 238
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	4 cut(s)	79, 163, 175, 293
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	41, 259
Kzo9I	GATC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	86, 159, 196, 207, 210, 223, 253
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	110, 143
MnlI	CCTC	4 cut(s)	76, 157, 193, 253
MspI	CCGG	2 cut(s)	197, 240
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	41, 259
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	2 cut(s)	110, 142
PpsI	GAGTC	2 cut(s)	110, 142
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	279
SchI	GAGTC	2 cut(s)	110, 143
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	2 cut(s)	22, 204
SfaNI	GCATC	1 cut(s)	227
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	209
TasI	AATT	1 cut(s)	268
TauI	GCSGC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.