Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Forward (+)

49976307 .. 49978227

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGCCCTTTATTCTTCTGCTTCTACTTGTTCTTGTTCTTCATCTCTTCCTTTATGCCCAGTCAACTTCTCCCGCGCATCCCCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAGTTGCATCAGAAAACACACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCGAAAATCCCAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGCCCACTAGCTCTTGCTCAAGCTTATCAAACAAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGGGCAATTCAAATCGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCCTGGCCGATATCGGCGGCAAGGGATTGTTCACCAAGGAAATCGATGAGGCATTGATAAACGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCAGACAAGACAATTTTGCCTTGTAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCGTCTTCACTAGCAGAACTGCCAGCTGGGAGTGTTATTGGTACTGCGTCGCTTAGAAGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGTGAACTTCCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGCGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGTCGCCCAAGGGGCAATTGGAATTGCCTGCCGGAGCAATGACGATAAAATGGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTGATGGAACCCGTGTACTAGAAACGTCTAGGGAAGGCCTGTATGCTTATAAAGAGATGATGGAGATGGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGGTCCTGGCTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

375

Amino Acids

40.33

Weight (kDa)

8.22

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	67 - 279	2.7e-78	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	292 - 365	1.8e-14	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
Acc36I	ACCTGC	1 cut(s)	1091
AccB1I	GGYRCC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccII	CGCG	1 cut(s)	78
AciI	CCGC	3 cut(s)	76, 366, 737
AcoI	YGGCCR	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	4 cut(s)	432, 450, 574, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	352, 733, 915, 938
AgsI	TTSAA	3 cut(s)	305, 856, 979
AjnI	CCWGG	3 cut(s)	351, 909, 1105
AluBI	AGCT	8 cut(s)	230, 242, 262, 287, 557, 695, 713, 782
AluI	AGCT	8 cut(s)	230, 242, 262, 287, 557, 695, 713, 782
AlwNI	CAGNNNCTG	1 cut(s)	1106
AoxI	GGCC	3 cut(s)	6, 354, 1033
ApeKI	GCWGC	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
Asp700I	GAANNNNTTC	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	7, 1103
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	4 cut(s)	341, 373, 425, 646
AvaII	GGWCC	1 cut(s)	1103
BanI	GGYRCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	5 cut(s)	908, 956, 995, 1051, 1057
BciT130I	CCWGG	3 cut(s)	353, 911, 1107
BcnI	CCSGG	1 cut(s)	644
BfaI	CTAG	6 cut(s)	227, 542, 660, 875, 1016, 1026
BfuAI	ACCTGC	1 cut(s)	1091
BglI	GCCNNNNNGGC	2 cut(s)	158, 794
BisI	GCNGC	2 cut(s)	170, 367
BlsI	GCNGC	2 cut(s)	171, 368
Bme1390I	CCNGG	4 cut(s)	353, 644, 911, 1107
Bme18I	GGWCC	1 cut(s)	1103
BmgT120I	GGNCC	2 cut(s)	7, 1103
BmiI	GGNNCC	2 cut(s)	211, 1006
BmrFI	CCNGG	4 cut(s)	353, 644, 911, 1107
BmrI	ACTGGG	2 cut(s)	56, 111
BmsI	GCATC	7 cut(s)	89, 132, 278, 283, 502, 946, 1063
BmuI	ACTGGG	2 cut(s)	56, 111
BpiI	GAAGAC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	74, 222
BpuMI	CCSGG	1 cut(s)	644
Bsa29I	ATCGAT	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	351, 384, 643, 790, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 733, 915, 938
Bse1I	ACTGG	4 cut(s)	62, 117, 331, 768
Bse3DI	GCAATG	4 cut(s)	264, 423, 617, 826
BseBI	CCWGG	3 cut(s)	353, 911, 1107
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	5 cut(s)	351, 384, 643, 790, 909
BseGI	GGATG	6 cut(s)	80, 274, 508, 772, 919, 1078
BseLI	CCNNNNNNNGG	4 cut(s)	352, 733, 915, 938
BseMI	GCAATG	4 cut(s)	264, 423, 617, 826
BseNI	ACTGG	4 cut(s)	62, 117, 331, 768
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	2 cut(s)	557, 713
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	8, 356, 1035
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	643, 814
BslI	CCNNNNNNNGG	4 cut(s)	352, 733, 915, 938
BsnI	GGCC	3 cut(s)	8, 356, 1035
Bsp1407I	TGTACA	1 cut(s)	430
BspACI	CCGC	3 cut(s)	76, 366, 737
BspANI	GGCC	3 cut(s)	8, 356, 1035
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	211, 1006
BspMI	ACCTGC	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	4 cut(s)	264, 423, 617, 826
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	4 cut(s)	62, 117, 331, 768
BssECI	CCNNGG	5 cut(s)	351, 384, 643, 790, 909
BssT1I	CCWWGG	2 cut(s)	384, 790
Bst2UI	CCWGG	3 cut(s)	353, 911, 1107
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	2 cut(s)	54, 285
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	555, 811, 949
BstDEI	CTNAG	3 cut(s)	283, 341, 584
BstF5I	GGATG	6 cut(s)	80, 274, 508, 772, 919, 1078
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 794, 944
BstNI	CCWGG	3 cut(s)	353, 911, 1107
BstNSI	RCATGY	1 cut(s)	888
BstSCI	CCNGG	4 cut(s)	351, 642, 909, 1105
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	8, 356, 1035
BsuTUI	ATCGAT	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	6 cut(s)	80, 274, 508, 772, 919, 1078
BtsIMutI	CAGTG	1 cut(s)	761
BveI	ACCTGC	1 cut(s)	1091
Cac8I	GCNNGC	3 cut(s)	555, 811, 949
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	7, 1103
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	2 cut(s)	522, 567
Csp6I	GTAC	4 cut(s)	431, 449, 573, 1013
CviAII	CATG	4 cut(s)	140, 439, 860, 885
CviQI	GTAC	4 cut(s)	431, 449, 573, 1013
DdeI	CTNAG	3 cut(s)	283, 341, 584
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	54, 285
EarI	CTCTTC	2 cut(s)	54, 285
EciI	GGCGGA	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	384, 790
Eco147I	AGGCCT	1 cut(s)	1035
Eco32I	GATATC	2 cut(s)	361, 614
Eco47I	GGWCC	1 cut(s)	1103
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	2 cut(s)	7, 1103
EcoRII	CCWGG	3 cut(s)	351, 909, 1105
EcoRV	GATATC	2 cut(s)	361, 614
EcoT14I	CCWWGG	2 cut(s)	384, 790
EcoT22I	ATGCAT	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	384, 790
FaeI	CATG	4 cut(s)	143, 442, 863, 888
FatI	CATG	4 cut(s)	139, 438, 859, 884
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	170, 367
FokI	GGATG	6 cut(s)	67, 261, 515, 779, 926, 1085
Fsp4HI	GCNGC	2 cut(s)	170, 367
FspBI	CTAG	6 cut(s)	227, 542, 660, 875, 1016, 1026
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	170, 367
GsaI	CCCAGC	2 cut(s)	561, 717
HaeIII	GGCC	3 cut(s)	8, 356, 1035
HapII	CCGG	2 cut(s)	643, 814
HgaI	GACGC	2 cut(s)	522, 567
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	143, 442, 863, 888
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	2 cut(s)	754, 856
HpaII	CCGG	2 cut(s)	643, 814
HphI	GGTGA	4 cut(s)	341, 373, 425, 646
Hpy166II	GTNNAC	5 cut(s)	67, 381, 433, 637, 1013
Hpy188I	TCNGA	2 cut(s)	128, 178
Hpy188III	TCNNGA	5 cut(s)	91, 145, 509, 655, 860
Hpy8I	GTNNAC	5 cut(s)	67, 381, 433, 637, 1013
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	3 cut(s)	500, 676, 1025
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	1022
HpyCH4V	TGCA	6 cut(s)	123, 269, 515, 884, 972, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 794, 944
HpyF3I	CTNAG	3 cut(s)	283, 341, 584
HpySE526I	ACGT	1 cut(s)	1022
Hsp92II	CATG	4 cut(s)	143, 442, 863, 888
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	816
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	7 cut(s)	89, 132, 278, 283, 502, 946, 1063
MaeI	CTAG	6 cut(s)	227, 542, 660, 875, 1016, 1026
MaeII	ACGT	1 cut(s)	1022
MaeIII	GTNAC	5 cut(s)	142, 413, 485, 745, 965
MboII	GAAGA	7 cut(s)	9, 33, 41, 302, 528, 600, 875
MfeI	CAATTG	1 cut(s)	798
MluCI	AATT	6 cut(s)	204, 300, 474, 798, 804, 851
MnlI	CCTC	9 cut(s)	98, 108, 163, 209, 286, 391, 493, 625, 885
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	6 cut(s)	527, 624, 665, 675, 1092, 1123
MslI	CAYNNNNRTG	2 cut(s)	138, 520
MspA1I	CMGCKG	2 cut(s)	557, 782
MspI	CCGG	2 cut(s)	643, 814
MspR9I	CCNGG	4 cut(s)	353, 644, 911, 1107
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	3 cut(s)	353, 911, 1107
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	158, 794, 944
NciI	CCSGG	1 cut(s)	644
NlaIII	CATG	4 cut(s)	143, 442, 863, 888
NlaIV	GGNNCC	2 cut(s)	211, 1006
NmuCI	GTSAC	2 cut(s)	142, 413
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	888
PagI	TCATGA	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	1035
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	2 cut(s)	754, 856
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	171, 368
PpuMI	RGGWCCY	1 cut(s)	1103
PsiI	TTATAA	1 cut(s)	1047
Psp5II	RGGWCCY	1 cut(s)	1103
Psp6I	CCWGG	3 cut(s)	351, 909, 1105
PspFI	CCCAGC	2 cut(s)	557, 713
PspGI	CCWGG	3 cut(s)	351, 909, 1105
PspN4I	GGNNCC	2 cut(s)	211, 1006
PspPI	GGNCC	2 cut(s)	7, 1103
PspPPI	RGGWCCY	1 cut(s)	1103
PstNI	CAGNNNCTG	1 cut(s)	1106
PvuII	CAGCTG	2 cut(s)	557, 782
RsaI	GTAC	4 cut(s)	432, 450, 574, 1014
RsaNI	GTAC	4 cut(s)	431, 449, 573, 1013
RseI	CAYNNNNRTG	2 cut(s)	138, 520
SaqAI	TTAA	6 cut(s)	527, 624, 665, 675, 1092, 1123
SatI	GCNGC	2 cut(s)	170, 367
Sau96I	GGNCC	2 cut(s)	7, 1103
ScrFI	CCNGG	4 cut(s)	353, 644, 911, 1107
SfaNI	GCATC	7 cut(s)	89, 132, 278, 283, 502, 946, 1063
SinI	GGWCC	1 cut(s)	1103
SmiMI	CAYNNNNRTG	2 cut(s)	138, 520
SmlI	CTYRAG	2 cut(s)	89, 237
SmoI	CTYRAG	2 cut(s)	89, 237
Sse9I	AATT	6 cut(s)	204, 300, 474, 798, 804, 851
SseBI	AGGCCT	1 cut(s)	1035
SsiI	CCGC	3 cut(s)	76, 366, 737
SspMI	CTAG	6 cut(s)	227, 542, 660, 875, 1016, 1026
StuI	AGGCCT	1 cut(s)	1035
StyD4I	CCNGG	4 cut(s)	351, 642, 909, 1105
StyI	CCWWGG	2 cut(s)	384, 790
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	1025
TaqI	TCGA	4 cut(s)	100, 165, 393, 752
TasI	AATT	6 cut(s)	204, 300, 474, 798, 804, 851
TatI	WGTACW	2 cut(s)	430, 1012
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	754, 856
Tru1I	TTAA	6 cut(s)	527, 624, 665, 675, 1092, 1123
Tru9I	TTAA	6 cut(s)	527, 624, 665, 675, 1092, 1123
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	2 cut(s)	142, 413
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	142, 413
TspDTI	ATGAA	4 cut(s)	33, 455, 783, 876
TspRI	CASTG	1 cut(s)	768
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	1103
XceI	RCATGY	1 cut(s)	888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	6 cut(s)	227, 542, 660, 875, 1016, 1026
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.