Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Reverse (-)

65904467 .. 65907139

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGCTCTTCCTAGCTTTGCACGAGTTGGGTCCGTCTCTGTTGTTGACTTCTCTTTACCATCCCTCAAGACTCGAGCTTTCCCAAATTGCATCAGAAAACAAAGCCTAAGGATCACACGAGCCTCTGTCGCAGTTGAGACTCAGAATCCCAAAGTGGCTCTAATCAAAATTGGCACCAGAGGAAGGCTAAATGATAGCCCACTAGCACTTGCTCAAGCTTATCAGACAAAAGACAAGCTCATTGCATCGCATCCCCAGCTAGCTGAAGAGGGGGCAATTGAAATCGTCATTATCAAAACTACTGGTGATAAAATACTAAGCCAACCCCTTGCAGACATAGGCGGGAAGGGACTGTTCACTAAGGAAATCGATGAAGCATTGATAAATGGTGATATTGACATTGCGGTACACTCAATGAAAGATGTACCTACTTATTTACCAGACAAGACAATTTTGCCCTGTAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCATCGTCACTAGCAGAGCTGCCAGCTGGGAGTGTTATTGGTACTGCATCACTTAGAAGAAAGTCGCAGATACTCCATAGATATCCCTCCCTCAAAGTGGAGGAGAACTTTAGGGGTAATGTCCAGACTAGATTGAAAAAGCTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTCAAACGCCTAAATATGACAGAGAATGTAACTTCCATTCTCTCACTAGACGAAATGCTTCCCGCTGTTGCCCAAGGGGCAATTGGAATTGCCTGCCGAAGCAATGATGATAAAATGGCTGAGTACATAGATAAACTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCTGATGGTAACTGCATATTTAAAGGCTTGGTAGCTTCCCCTGATGGAACCCGCGTACTTGAGACGTCTAGGAAAGGCCCATATGCTTATGAAGAGATGATGGAGATGGGTAAGGATGCAGGGCAGGAACTTCTTAAACTGGCAGGTCCTGGTTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

367

Amino Acids

39.74

Weight (kDa)

8.03

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	56 - 272	3.5e-76	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	285 - 358	8.2e-15	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1004
Acc36I	ACCTGC	1 cut(s)	1070
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	990
AciI	CCGC	4 cut(s)	345, 407, 759, 988
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	1001
AfaI	GTAC	5 cut(s)	411, 429, 553, 821, 993
AfiI	CCNNNNNNNGG	4 cut(s)	186, 607, 894, 917
AgsI	TTSAA	2 cut(s)	284, 646
AjnI	CCWGG	2 cut(s)	888, 1084
Alw26I	GTCTC	3 cut(s)	43, 134, 992
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	1085
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	1012
ApeKI	GCWGC	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	3 cut(s)	33, 1013, 1082
AsuHPI	GGTGA	2 cut(s)	320, 404
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	33, 1082
AxyI	CCTNAGG	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	699
BauI	CACGAG	2 cut(s)	24, 120
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	6 cut(s)	70, 887, 935, 974, 1030, 1036
BciT130I	CCWGG	2 cut(s)	890, 1086
BcoDI	GTCTC	3 cut(s)	43, 134, 992
BfaI	CTAG	8 cut(s)	15, 206, 263, 521, 639, 743, 854, 1005
BfuAI	ACCTGC	1 cut(s)	1070
BglI	GCCNNNNNGGC	1 cut(s)	773
BisI	GCNGC	1 cut(s)	530
BlsI	GCNGC	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	890, 1086
Bme18I	GGWCC	2 cut(s)	33, 1082
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	3 cut(s)	33, 1013, 1082
BmiI	GGNNCC	3 cut(s)	34, 178, 985
BmrFI	CCNGG	2 cut(s)	890, 1086
BmsI	GCATC	8 cut(s)	102, 257, 262, 481, 521, 566, 925, 1042
BmtI	GCTAGC	1 cut(s)	266
BpuEI	CTTGAG	3 cut(s)	53, 201, 1016
Bsa29I	ATCGAT	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	1001
BsaJI	CCNNGG	2 cut(s)	769, 888
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 607, 894, 917
Bse1I	ACTGG	2 cut(s)	310, 1080
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	3 cut(s)	243, 402, 805
BseBI	CCWGG	2 cut(s)	890, 1086
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	769, 888
BseGI	GGATG	5 cut(s)	62, 253, 487, 898, 1057
BseLI	CCNNNNNNNGG	4 cut(s)	186, 607, 894, 917
BseMI	GCAATG	3 cut(s)	243, 402, 805
BseMII	CTCAG	2 cut(s)	158, 807
BseNI	ACTGG	2 cut(s)	310, 1080
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	516
BseYI	CCCAGC	3 cut(s)	258, 536, 692
Bsh1236I	CGCG	1 cut(s)	990
BshFI	GGCC	1 cut(s)	1014
BshNI	GGYRCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	4 cut(s)	186, 607, 894, 917
BsmAI	GTCTC	3 cut(s)	43, 134, 992
BsmBI	CGTCTC	2 cut(s)	43, 992
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	1014
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	345, 407, 759, 988
BspANI	GGCC	1 cut(s)	1014
BspCNI	CTCAG	2 cut(s)	157, 808
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	990
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	34, 178, 985
BspMI	ACCTGC	1 cut(s)	1070
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	243, 402, 805
BsrI	ACTGG	2 cut(s)	310, 1080
BssECI	CCNNGG	2 cut(s)	769, 888
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	1001
BssSI	CACGAG	2 cut(s)	24, 120
BssT1I	CCWWGG	1 cut(s)	769
Bst2BI	CACGAG	2 cut(s)	24, 120
Bst2UI	CCWGG	2 cut(s)	890, 1086
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	3 cut(s)	15, 264, 1023
BstACI	GRCGYC	1 cut(s)	1001
BstC8I	GCNNGC	4 cut(s)	264, 534, 790, 928
BstDEI	CTNAG	6 cut(s)	110, 144, 320, 363, 563, 816
BstF5I	GGATG	5 cut(s)	62, 253, 487, 898, 1057
BstFNI	CGCG	1 cut(s)	990
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	3 cut(s)	43, 134, 992
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 259, 773, 923
BstNI	CCWGG	2 cut(s)	890, 1086
BstNSI	RCATGY	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	888, 1084
BstUI	CGCG	1 cut(s)	990
BstV1I	GCAGC	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	1014
BsuTUI	ATCGAT	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	5 cut(s)	62, 253, 487, 898, 1057
BveI	ACCTGC	1 cut(s)	1070
Cac8I	GCNNGC	4 cut(s)	264, 534, 790, 928
CaiI	CAGNNNCTG	1 cut(s)	1085
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	33, 1013, 1082
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	5 cut(s)	410, 428, 552, 820, 992
CviAII	CATG	2 cut(s)	839, 864
CviQI	GTAC	5 cut(s)	410, 428, 552, 820, 992
DdeI	CTNAG	6 cut(s)	110, 144, 320, 363, 563, 816
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	958
Eam1104I	CTCTTC	3 cut(s)	15, 264, 1023
EarI	CTCTTC	3 cut(s)	15, 264, 1023
Eco130I	CCWWGG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	699
Eco32I	GATATC	1 cut(s)	593
Eco47I	GGWCC	2 cut(s)	33, 1082
Eco57I	CTGAAG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	888, 1084
EcoRV	GATATC	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	2 cut(s)	43, 992
FaeI	CATG	2 cut(s)	842, 867
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	2 cut(s)	838, 863
FauI	CCCGC	3 cut(s)	338, 766, 995
FauNDI	CATATG	1 cut(s)	1018
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	5 cut(s)	49, 240, 494, 905, 1064
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	8 cut(s)	15, 206, 263, 521, 639, 743, 854, 1005
GluI	GCNGC	1 cut(s)	530
GsaI	CCCAGC	3 cut(s)	262, 540, 696
HaeIII	GGCC	1 cut(s)	1014
Hin1I	GRCGYC	1 cut(s)	1001
Hin1II	CATG	2 cut(s)	842, 867
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	2 cut(s)	219, 650
HinfI	GANTC	4 cut(s)	73, 142, 148, 835
HphI	GGTGA	2 cut(s)	320, 404
Hpy166II	GTNNAC	3 cut(s)	49, 360, 412
Hpy188I	TCNGA	3 cut(s)	98, 147, 228
Hpy188III	TCNNGA	4 cut(s)	70, 488, 634, 839
Hpy8I	GTNNAC	3 cut(s)	49, 360, 412
HpyAV	CCTTC	4 cut(s)	180, 343, 479, 655
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 259, 773, 923
HpyF3I	CTNAG	6 cut(s)	110, 144, 320, 363, 563, 816
HpySE526I	ACGT	1 cut(s)	1001
Hsp92I	GRCGYC	1 cut(s)	1001
Hsp92II	CATG	2 cut(s)	842, 867
Kzo9I	GATC	1 cut(s)	114
LguI	GCTCTTC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	8 cut(s)	102, 257, 262, 481, 521, 566, 925, 1042
MaeI	CTAG	8 cut(s)	15, 206, 263, 521, 639, 743, 854, 1005
MaeII	ACGT	1 cut(s)	1001
MaeIII	GTNAC	4 cut(s)	464, 516, 724, 944
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	4 cut(s)	281, 579, 854, 1040
MfeI	CAATTG	2 cut(s)	279, 777
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	6 cut(s)	88, 171, 279, 453, 777, 783
MlyI	GAGTC	2 cut(s)	67, 136
MnlI	CCTC	9 cut(s)	77, 136, 176, 265, 472, 604, 607, 611, 864
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	5 cut(s)	506, 654, 957, 1071, 1102
MslI	CAYNNNNRTG	1 cut(s)	499
MspA1I	CMGCKG	2 cut(s)	536, 761
MspR9I	CCNGG	2 cut(s)	890, 1086
MunI	CAATTG	2 cut(s)	279, 777
MvaI	CCWGG	2 cut(s)	890, 1086
MvnI	CGCG	1 cut(s)	990
MwoI	GCNNNNNNNGC	4 cut(s)	131, 259, 773, 923
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	1 cut(s)	114
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	842, 867
NlaIV	GGNNCC	3 cut(s)	34, 178, 985
NmuCI	GTSAC	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	867
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	148, 835
PkrI	GCNGC	1 cut(s)	531
PleI	GAGTC	2 cut(s)	67, 136
PpsI	GAGTC	2 cut(s)	67, 136
PpuMI	RGGWCCY	1 cut(s)	1082
Psp5II	RGGWCCY	1 cut(s)	1082
Psp6I	CCWGG	2 cut(s)	888, 1084
PspFI	CCCAGC	3 cut(s)	258, 536, 692
PspGI	CCWGG	2 cut(s)	888, 1084
PspN4I	GGNNCC	3 cut(s)	34, 178, 985
PspPI	GGNCC	3 cut(s)	33, 1013, 1082
PspPPI	RGGWCCY	1 cut(s)	1082
PspXI	VCTCGAGB	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	5 cut(s)	411, 429, 553, 821, 993
RsaNI	GTAC	5 cut(s)	410, 428, 552, 820, 992
RseI	CAYNNNNRTG	1 cut(s)	499
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	506, 654, 957, 1071, 1102
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	33, 1013, 1082
SchI	GAGTC	2 cut(s)	67, 136
ScrFI	CCNGG	2 cut(s)	890, 1086
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	8 cut(s)	102, 257, 262, 481, 521, 566, 925, 1042
Sfr274I	CTCGAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	33, 1082
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	4 cut(s)	68, 75, 216, 995
SmoI	CTYRAG	4 cut(s)	68, 75, 216, 995
Sse9I	AATT	6 cut(s)	88, 171, 279, 453, 777, 783
SsiI	CCGC	4 cut(s)	345, 407, 759, 988
SspMI	CTAG	8 cut(s)	15, 206, 263, 521, 639, 743, 854, 1005
StyD4I	CCNGG	2 cut(s)	888, 1084
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	1004
TaqI	TCGA	2 cut(s)	76, 372
TasI	AATT	6 cut(s)	88, 171, 279, 453, 777, 783
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	2 cut(s)	148, 835
Tru1I	TTAA	5 cut(s)	506, 654, 957, 1071, 1102
Tru9I	TTAA	5 cut(s)	506, 654, 957, 1071, 1102
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	390, 434, 855, 1041
TspGWI	ACGGA	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	33, 1082
XceI	RCATGY	1 cut(s)	867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	776
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	8 cut(s)	15, 206, 263, 521, 639, 743, 854, 1005
ZraI	GACGTC	1 cut(s)	1002
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.