Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Forward (+)

49017831 .. 49020481

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGGCCCTTTATTCTTCTGCTTCTACTTGTTCTTGTTCTTCATCTCTTCCTTTATGCCCAGTCAACTTCTCCCGCGCATCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAATTGCATCAGAAAACTCACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCCAGAATCCTAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGGTACTTGGGTTCGCTTCATTTCCCTTCATCTGATAGCCCACTAGCTCTTGCTCAAGCTTATCAAACAAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGTGCAATTGAAATCGTCATTATCAAAACTACCGGTGATAAGATACTAAGCCAACCCCTGGCCGATATCGGCGGCAAGGGATTGTTCACCAAGGAAATTGATGAGGCCTTGATAAACGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCAGACAAGACAATTTTGCCTTGTAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCATCTTCACTAGCAGAACTGCCAGCTGGGAGTGTTATTGGTACTGCCTCGCTTAGAAGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGAGAACTTTCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGCGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGTCGCCCAAGGGGCAATTGGAATTGCTTGCCGGAGCAATGACGATAAAATGGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCCGATGGAACCCGCGTACTAGAGACGACTAGGAAAGGCCTGTATGCTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGGTCCTGGCTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

385

Amino Acids

41.62

Weight (kDa)

8.4

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	83 - 290	1.3e-74	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	303 - 376	6e-15	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
Acc36I	ACCTGC	1 cut(s)	1124
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccII	CGCG	2 cut(s)	78, 1044
AciI	CCGC	4 cut(s)	76, 399, 770, 1042
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	5 cut(s)	221, 465, 483, 607, 1047
AfiI	CCNNNNNNNGG	5 cut(s)	216, 385, 766, 948, 971
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	338, 889, 1012
AjnI	CCWGG	3 cut(s)	384, 942, 1138
AluBI	AGCT	8 cut(s)	263, 275, 295, 320, 590, 728, 746, 815
AluI	AGCT	8 cut(s)	263, 275, 295, 320, 590, 728, 746, 815
Alw26I	GTCTC	1 cut(s)	1046
AlwNI	CAGNNNCTG	1 cut(s)	1139
AoxI	GGCC	4 cut(s)	6, 387, 432, 1066
ApeKI	GCWGC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
AsiGI	ACCGGT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	7, 1136
AsuHPI	GGTGA	3 cut(s)	374, 406, 458
AvaII	GGWCC	1 cut(s)	1136
BaeI	ACNNNNGTAYC	2 cut(s)	211, 244
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	4 cut(s)	941, 989, 1028, 1084
BciT130I	CCWGG	3 cut(s)	386, 944, 1140
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	6 cut(s)	260, 575, 693, 908, 1049, 1059
BfuAI	ACCTGC	1 cut(s)	1124
BglI	GCCNNNNNGGC	2 cut(s)	155, 827
BisI	GCNGC	2 cut(s)	167, 400
BlsI	GCNGC	2 cut(s)	168, 401
Bme1390I	CCNGG	3 cut(s)	386, 944, 1140
Bme18I	GGWCC	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	7, 1136
BmiI	GGNNCC	2 cut(s)	208, 1039
BmrFI	CCNGG	3 cut(s)	386, 944, 1140
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	8 cut(s)	89, 129, 311, 316, 535, 575, 979, 1096
BmuI	ACTGGG	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	71, 255
BsaJI	CCNNGG	4 cut(s)	384, 417, 823, 942
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 385, 766, 948, 971
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	2 cut(s)	62, 801
Bse3DI	GCAATG	4 cut(s)	297, 456, 650, 859
BseBI	CCWGG	3 cut(s)	386, 944, 1140
BseDI	CCNNGG	4 cut(s)	384, 417, 823, 942
BseGI	GGATG	6 cut(s)	80, 307, 541, 805, 952, 1111
BseLI	CCNNNNNNNGG	5 cut(s)	216, 385, 766, 948, 971
BseMI	GCAATG	4 cut(s)	297, 456, 650, 859
BseNI	ACTGG	2 cut(s)	62, 801
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	2 cut(s)	590, 746
Bsh1236I	CGCG	2 cut(s)	78, 1044
BshFI	GGCC	4 cut(s)	8, 389, 434, 1068
BshNI	GGYRCC	1 cut(s)	206
BshTI	ACCGGT	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	360, 847
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	5 cut(s)	216, 385, 766, 948, 971
BsmAI	GTCTC	1 cut(s)	1046
BsmBI	CGTCTC	1 cut(s)	1046
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	8, 389, 434, 1068
Bsp1407I	TGTACA	1 cut(s)	463
BspACI	CCGC	4 cut(s)	76, 399, 770, 1042
BspANI	GGCC	4 cut(s)	8, 389, 434, 1068
BspFNI	CGCG	2 cut(s)	78, 1044
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	208, 1039
BspMI	ACCTGC	1 cut(s)	1124
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	4 cut(s)	297, 456, 650, 859
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	62, 801
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	384, 417, 823, 942
BssT1I	CCWWGG	2 cut(s)	417, 823
Bst2UI	CCWGG	3 cut(s)	386, 944, 1140
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	54, 318
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	588, 844, 982
BstDEI	CTNAG	3 cut(s)	316, 374, 617
BstF5I	GGATG	6 cut(s)	80, 307, 541, 805, 952, 1111
BstFNI	CGCG	2 cut(s)	78, 1044
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	1046
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 827, 977
BstNI	CCWGG	3 cut(s)	386, 944, 1140
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	3 cut(s)	384, 942, 1138
BstUI	CGCG	2 cut(s)	78, 1044
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	8, 389, 434, 1068
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	6 cut(s)	80, 307, 541, 805, 952, 1111
BtsIMutI	CAGTG	1 cut(s)	794
BveI	ACCTGC	1 cut(s)	1124
Cac8I	GCNNGC	3 cut(s)	588, 844, 982
CaiI	CAGNNNCTG	1 cut(s)	1139
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	7, 1136
Csp6I	GTAC	5 cut(s)	220, 464, 482, 606, 1046
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	4 cut(s)	137, 472, 893, 918
CviQI	GTAC	5 cut(s)	220, 464, 482, 606, 1046
DdeI	CTNAG	3 cut(s)	316, 374, 617
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	54, 318
EarI	CTCTTC	2 cut(s)	54, 318
EciI	GGCGGA	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	417, 823
Eco147I	AGGCCT	2 cut(s)	434, 1068
Eco32I	GATATC	2 cut(s)	394, 647
Eco47I	GGWCC	1 cut(s)	1136
Eco57I	CTGAAG	1 cut(s)	342
EcoO109I	RGGNCCY	2 cut(s)	7, 1136
EcoRII	CCWGG	3 cut(s)	384, 942, 1138
EcoRV	GATATC	2 cut(s)	394, 647
EcoT14I	CCWWGG	2 cut(s)	417, 823
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	417, 823
Esp3I	CGTCTC	1 cut(s)	1046
FaeI	CATG	4 cut(s)	140, 475, 896, 921
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	4 cut(s)	136, 471, 892, 917
FauI	CCCGC	2 cut(s)	83, 1049
Fnu4HI	GCNGC	2 cut(s)	167, 400
FokI	GGATG	6 cut(s)	67, 294, 548, 812, 959, 1118
Fsp4HI	GCNGC	2 cut(s)	167, 400
FspBI	CTAG	6 cut(s)	260, 575, 693, 908, 1049, 1059
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	167, 400
GsaI	CCCAGC	2 cut(s)	594, 750
HaeIII	GGCC	4 cut(s)	8, 389, 434, 1068
HapII	CCGG	2 cut(s)	360, 847
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	140, 475, 896, 921
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	3 cut(s)	178, 787, 889
HpaII	CCGG	2 cut(s)	360, 847
HphI	GGTGA	3 cut(s)	374, 406, 458
Hpy166II	GTNNAC	3 cut(s)	67, 414, 466
Hpy188I	TCNGA	2 cut(s)	125, 250
Hpy188III	TCNNGA	5 cut(s)	88, 142, 542, 688, 893
Hpy8I	GTNNAC	3 cut(s)	67, 414, 466
HpyAV	CCTTC	4 cut(s)	210, 252, 533, 709
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	8 cut(s)	120, 302, 332, 548, 566, 917, 1005, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 827, 977
HpyF3I	CTNAG	3 cut(s)	316, 374, 617
Hsp92II	CATG	4 cut(s)	140, 475, 896, 921
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	849
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	8 cut(s)	89, 129, 311, 316, 535, 575, 979, 1096
MaeI	CTAG	6 cut(s)	260, 575, 693, 908, 1049, 1059
MaeIII	GTNAC	5 cut(s)	139, 446, 518, 778, 998
MboII	GAAGA	7 cut(s)	9, 33, 41, 335, 561, 633, 908
MfeI	CAATTG	3 cut(s)	115, 333, 831
MluCI	AATT	8 cut(s)	115, 201, 333, 423, 507, 831, 837, 884
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	6 cut(s)	560, 657, 698, 708, 1125, 1156
MslI	CAYNNNNRTG	1 cut(s)	553
MspA1I	CMGCKG	2 cut(s)	590, 815
MspI	CCGG	2 cut(s)	360, 847
MspR9I	CCNGG	3 cut(s)	386, 944, 1140
MunI	CAATTG	3 cut(s)	115, 333, 831
MvaI	CCWGG	3 cut(s)	386, 944, 1140
MvnI	CGCG	2 cut(s)	78, 1044
MwoI	GCNNNNNNNGC	3 cut(s)	155, 827, 977
NlaIII	CATG	4 cut(s)	140, 475, 896, 921
NlaIV	GGNNCC	2 cut(s)	208, 1039
NmuCI	GTSAC	2 cut(s)	139, 446
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	921
PagI	TCATGA	1 cut(s)	892
PceI	AGGCCT	2 cut(s)	434, 1068
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	178, 787, 889
PflMI	CCANNNNNTGG	1 cut(s)	385
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	168, 401
PpuMI	RGGWCCY	1 cut(s)	1136
PsiI	TTATAA	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	1136
Psp6I	CCWGG	3 cut(s)	384, 942, 1138
PspFI	CCCAGC	2 cut(s)	590, 746
PspGI	CCWGG	3 cut(s)	384, 942, 1138
PspN4I	GGNNCC	2 cut(s)	208, 1039
PspPI	GGNCC	2 cut(s)	7, 1136
PspPPI	RGGWCCY	1 cut(s)	1136
PstNI	CAGNNNCTG	1 cut(s)	1139
PvuII	CAGCTG	2 cut(s)	590, 815
RsaI	GTAC	5 cut(s)	221, 465, 483, 607, 1047
RsaNI	GTAC	5 cut(s)	220, 464, 482, 606, 1046
RseI	CAYNNNNRTG	1 cut(s)	553
SaqAI	TTAA	6 cut(s)	560, 657, 698, 708, 1125, 1156
SatI	GCNGC	2 cut(s)	167, 400
Sau96I	GGNCC	2 cut(s)	7, 1136
ScrFI	CCNGG	3 cut(s)	386, 944, 1140
SfaNI	GCATC	8 cut(s)	89, 129, 311, 316, 535, 575, 979, 1096
SinI	GGWCC	1 cut(s)	1136
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	86, 270
SmoI	CTYRAG	2 cut(s)	86, 270
Sse9I	AATT	8 cut(s)	115, 201, 333, 423, 507, 831, 837, 884
SseBI	AGGCCT	2 cut(s)	434, 1068
SsiI	CCGC	4 cut(s)	76, 399, 770, 1042
SspMI	CTAG	6 cut(s)	260, 575, 693, 908, 1049, 1059
StuI	AGGCCT	2 cut(s)	434, 1068
StyD4I	CCNGG	3 cut(s)	384, 942, 1138
StyI	CCWWGG	2 cut(s)	417, 823
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	97, 162, 785
TasI	AATT	8 cut(s)	115, 201, 333, 423, 507, 831, 837, 884
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	3 cut(s)	178, 787, 889
Tru1I	TTAA	6 cut(s)	560, 657, 698, 708, 1125, 1156
Tru9I	TTAA	6 cut(s)	560, 657, 698, 708, 1125, 1156
TscAI	CASTG	1 cut(s)	801
TseFI	GTSAC	2 cut(s)	139, 446
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	139, 446
TspDTI	ATGAA	6 cut(s)	33, 224, 234, 488, 816, 909
TspRI	CASTG	1 cut(s)	801
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	1136
XceI	RCATGY	1 cut(s)	921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	6 cut(s)	260, 575, 693, 908, 1049, 1059
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.