Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Reverse (-)

19935024 .. 19936885

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCCCAGTCAACTTCTCCCGCGCATCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAGTTGCATCAGAAAACACACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCGAAAATCCCAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGGATAGCCCACTAGCTCTTGCTCAAGCTTATCAAACTAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGAGCAATTCAAATCGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCCTGGCCGACATCGGCGGCAAGGGACTGTTTACTAAGGAAATCGATGAGGCATTGATAAACGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCTGACAAGACAATTTTGCCTTGCAACCTACCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCATCTTCACTAGCAGAACTGCCAGCTGGGAGTGTTATTGGTACTGCATCGCTTAGAAGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGAGAACTTTCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGCGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGTCGCCCAAGGGGCAATTGGAATTGCCTGCCGGAGCAATGACGATAAAATGGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTGATGGAACCCGCGTACTAGAGACGTCTAGGAAAGGCCTGTATGCTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGGTCCTGGCTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

356

Amino Acids

39.01

Weight (kDa)

8.68

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	55 - 261	2.5e-74	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	274 - 347	1e-14	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AatII	GACGTC	1 cut(s)	971
Acc36I	ACCTGC	1 cut(s)	1037
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	2 cut(s)	22, 957
AciI	CCGC	4 cut(s)	20, 312, 683, 955
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	968
AfaI	GTAC	4 cut(s)	378, 396, 520, 960
AfiI	CCNNNNNNNGG	5 cut(s)	160, 298, 679, 861, 884
AgsI	TTSAA	3 cut(s)	251, 802, 925
AjnI	CCWGG	3 cut(s)	297, 855, 1051
AluBI	AGCT	8 cut(s)	176, 188, 208, 233, 503, 641, 659, 728
AluI	AGCT	8 cut(s)	176, 188, 208, 233, 503, 641, 659, 728
Alw26I	GTCTC	1 cut(s)	959
AlwNI	CAGNNNCTG	1 cut(s)	1052
AoxI	GGCC	2 cut(s)	300, 979
ApeKI	GCWGC	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	1049
AsuHPI	GGTGA	2 cut(s)	287, 371
AvaII	GGWCC	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	4 cut(s)	854, 902, 941, 997
BciT130I	CCWGG	3 cut(s)	299, 857, 1053
BcoDI	GTCTC	1 cut(s)	959
BfaI	CTAG	6 cut(s)	173, 488, 606, 821, 962, 972
BfuAI	ACCTGC	1 cut(s)	1037
BglI	GCCNNNNNGGC	2 cut(s)	99, 740
BisI	GCNGC	2 cut(s)	111, 313
BlsI	GCNGC	2 cut(s)	112, 314
Bme1390I	CCNGG	3 cut(s)	299, 857, 1053
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	1 cut(s)	1049
BmiI	GGNNCC	2 cut(s)	152, 952
BmrFI	CCNGG	3 cut(s)	299, 857, 1053
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	9 cut(s)	33, 73, 224, 229, 448, 488, 533, 892, 1009
BmuI	ACTGGG	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	15, 168
Bsa29I	ATCGAT	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	297, 736, 855
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 298, 679, 861, 884
Bse1I	ACTGG	4 cut(s)	6, 58, 277, 714
Bse3DI	GCAATG	4 cut(s)	210, 369, 563, 772
BseBI	CCWGG	3 cut(s)	299, 857, 1053
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	297, 736, 855
BseGI	GGATG	6 cut(s)	24, 220, 454, 718, 865, 1024
BseLI	CCNNNNNNNGG	5 cut(s)	160, 298, 679, 861, 884
BseMI	GCAATG	4 cut(s)	210, 369, 563, 772
BseNI	ACTGG	4 cut(s)	6, 58, 277, 714
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	2 cut(s)	503, 659
Bsh1236I	CGCG	2 cut(s)	22, 957
BshFI	GGCC	2 cut(s)	302, 981
BshNI	GGYRCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	760
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	160, 298, 679, 861, 884
BsmAI	GTCTC	1 cut(s)	959
BsmBI	CGTCTC	1 cut(s)	959
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	302, 981
Bsp1407I	TGTACA	1 cut(s)	376
BspACI	CCGC	4 cut(s)	20, 312, 683, 955
BspANI	GGCC	2 cut(s)	302, 981
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	22, 957
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	152, 952
BspMI	ACCTGC	1 cut(s)	1037
BspT107I	GGYRCC	1 cut(s)	150
BsrDI	GCAATG	4 cut(s)	210, 369, 563, 772
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	4 cut(s)	6, 58, 277, 714
BssECI	CCNNGG	3 cut(s)	297, 736, 855
BssNI	GRCGYC	1 cut(s)	968
BssT1I	CCWWGG	1 cut(s)	736
Bst2UI	CCWGG	3 cut(s)	299, 857, 1053
Bst4CI	ACNGT	2 cut(s)	324, 359
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	501, 757, 895
BstDEI	CTNAG	4 cut(s)	229, 287, 330, 530
BstF5I	GGATG	6 cut(s)	24, 220, 454, 718, 865, 1024
BstFNI	CGCG	2 cut(s)	22, 957
BstHHI	GCGC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	959
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 740, 890
BstNI	CCWGG	3 cut(s)	299, 857, 1053
BstNSI	RCATGY	1 cut(s)	834
BstSCI	CCNGG	3 cut(s)	297, 855, 1051
BstUI	CGCG	2 cut(s)	22, 957
BstV1I	GCAGC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	302, 981
BsuTUI	ATCGAT	1 cut(s)	339
BtgZI	GCGATG	2 cut(s)	201, 510
BtsCI	GGATG	6 cut(s)	24, 220, 454, 718, 865, 1024
BtsIMutI	CAGTG	1 cut(s)	707
BveI	ACCTGC	1 cut(s)	1037
Cac8I	GCNNGC	3 cut(s)	501, 757, 895
CaiI	CAGNNNCTG	1 cut(s)	1052
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	1049
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	4 cut(s)	377, 395, 519, 959
CviAII	CATG	4 cut(s)	81, 385, 806, 831
CviQI	GTAC	4 cut(s)	377, 395, 519, 959
DdeI	CTNAG	4 cut(s)	229, 287, 330, 530
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	736
Eco147I	AGGCCT	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	1049
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoRII	CCWGG	3 cut(s)	297, 855, 1051
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	4 cut(s)	84, 388, 809, 834
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	4 cut(s)	80, 384, 805, 830
FauI	CCCGC	2 cut(s)	27, 962
Fnu4HI	GCNGC	2 cut(s)	111, 313
FokI	GGATG	6 cut(s)	11, 207, 461, 725, 872, 1031
Fsp4HI	GCNGC	2 cut(s)	111, 313
FspBI	CTAG	6 cut(s)	173, 488, 606, 821, 962, 972
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	111, 313
GsaI	CCCAGC	2 cut(s)	507, 663
HaeIII	GGCC	2 cut(s)	302, 981
HapII	CCGG	1 cut(s)	760
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	968
Hin1II	CATG	4 cut(s)	84, 388, 809, 834
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	700, 802
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	2 cut(s)	287, 371
Hpy166II	GTNNAC	3 cut(s)	11, 327, 379
Hpy188I	TCNGA	2 cut(s)	69, 119
Hpy188III	TCNNGA	5 cut(s)	32, 86, 455, 601, 806
Hpy8I	GTNNAC	3 cut(s)	11, 327, 379
HpyAV	CCTTC	2 cut(s)	154, 622
HpyCH4III	ACNGT	2 cut(s)	324, 359
HpyCH4IV	ACGT	1 cut(s)	968
HpyCH4V	TGCA	9 cut(s)	64, 215, 432, 461, 479, 524, 830, 918, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 740, 890
HpyF3I	CTNAG	4 cut(s)	229, 287, 330, 530
HpySE526I	ACGT	1 cut(s)	968
Hsp92I	GRCGYC	1 cut(s)	968
Hsp92II	CATG	4 cut(s)	84, 388, 809, 834
HspAI	GCGC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	242, 762
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	9 cut(s)	33, 73, 224, 229, 448, 488, 533, 892, 1009
MaeI	CTAG	6 cut(s)	173, 488, 606, 821, 962, 972
MaeII	ACGT	1 cut(s)	968
MaeIII	GTNAC	4 cut(s)	83, 359, 691, 911
MboII	GAAGA	4 cut(s)	248, 474, 546, 821
MfeI	CAATTG	1 cut(s)	744
MluCI	AATT	6 cut(s)	145, 246, 420, 744, 750, 797
MnlI	CCTC	9 cut(s)	39, 49, 104, 150, 232, 337, 439, 571, 831
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	6 cut(s)	473, 570, 611, 621, 1038, 1069
MslI	CAYNNNNRTG	2 cut(s)	79, 466
MspA1I	CMGCKG	2 cut(s)	503, 728
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	3 cut(s)	299, 857, 1053
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	3 cut(s)	299, 857, 1053
MvnI	CGCG	2 cut(s)	22, 957
MwoI	GCNNNNNNNGC	3 cut(s)	99, 740, 890
NlaIII	CATG	4 cut(s)	84, 388, 809, 834
NlaIV	GGNNCC	2 cut(s)	152, 952
NmuCI	GTSAC	2 cut(s)	83, 359
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	1 cut(s)	834
PagI	TCATGA	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	700, 802
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	112, 314
PpuMI	RGGWCCY	1 cut(s)	1049
PsiI	TTATAA	1 cut(s)	993
Psp5II	RGGWCCY	1 cut(s)	1049
Psp6I	CCWGG	3 cut(s)	297, 855, 1051
PspFI	CCCAGC	2 cut(s)	503, 659
PspGI	CCWGG	3 cut(s)	297, 855, 1051
PspN4I	GGNNCC	2 cut(s)	152, 952
PspPI	GGNCC	1 cut(s)	1049
PspPPI	RGGWCCY	1 cut(s)	1049
PstNI	CAGNNNCTG	1 cut(s)	1052
PvuII	CAGCTG	2 cut(s)	503, 728
RsaI	GTAC	4 cut(s)	378, 396, 520, 960
RsaNI	GTAC	4 cut(s)	377, 395, 519, 959
RseI	CAYNNNNRTG	2 cut(s)	79, 466
SaqAI	TTAA	6 cut(s)	473, 570, 611, 621, 1038, 1069
SatI	GCNGC	2 cut(s)	111, 313
Sau96I	GGNCC	1 cut(s)	1049
ScrFI	CCNGG	3 cut(s)	299, 857, 1053
SfaNI	GCATC	9 cut(s)	33, 73, 224, 229, 448, 488, 533, 892, 1009
SinI	GGWCC	1 cut(s)	1049
SmiMI	CAYNNNNRTG	2 cut(s)	79, 466
SmlI	CTYRAG	2 cut(s)	30, 183
SmoI	CTYRAG	2 cut(s)	30, 183
Sse9I	AATT	6 cut(s)	145, 246, 420, 744, 750, 797
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	4 cut(s)	20, 312, 683, 955
SspMI	CTAG	6 cut(s)	173, 488, 606, 821, 962, 972
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	3 cut(s)	297, 855, 1051
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	2 cut(s)	324, 359
TaiI	ACGT	1 cut(s)	971
TaqI	TCGA	4 cut(s)	41, 106, 339, 698
TasI	AATT	6 cut(s)	145, 246, 420, 744, 750, 797
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	700, 802
Tru1I	TTAA	6 cut(s)	473, 570, 611, 621, 1038, 1069
Tru9I	TTAA	6 cut(s)	473, 570, 611, 621, 1038, 1069
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	2 cut(s)	83, 359
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	83, 359
TspDTI	ATGAA	3 cut(s)	401, 729, 822
TspRI	CASTG	1 cut(s)	714
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	1049
XceI	RCATGY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	6 cut(s)	173, 488, 606, 821, 962, 972
ZraI	GACGTC	1 cut(s)	969
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.