Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Forward (+)

13929597 .. 13929911

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTCAACGACTTGGTTAGTGACATGATCTGTGAATTCGTAAGTGGCATGAACTGTGACACGGTGAGTGACTTGATTAGTGATATGAACTGTGACACAGTGAGCGACTTAGTCAGTAGTATGATTTGTGACTTTGTCAGCAGAACTTCTTTTTGTGTTCTAACAAGCAAATCACTAACTAAATGTTACATAAACACAACTTTTAATGGTATGACATTAAAGGGGGGGGTGAAATTTGCACACCCCATATTACAAACCACACACCCTTCTATTATTTTAATAATATTTTATCTAACATCTCTTTTCACTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

4.64

Isoelectric Point (pI)

22.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	35, 233
ApoI	RAATTY	2 cut(s)	35, 233
AsuHPI	GGTGA	2 cut(s)	76, 241
Bsp143I	GATC	1 cut(s)	27
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	56, 64, 92, 100
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	105
CviAII	CATG	2 cut(s)	25, 49
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	28, 52
FaiI	YATR	7 cut(s)	26, 50, 86, 122, 191, 212, 248
FatI	CATG	2 cut(s)	24, 48
Hin1II	CATG	2 cut(s)	28, 52
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	76, 241
Hpy166II	GTNNAC	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	4 cut(s)	56, 64, 92, 100
HpyCH4V	TGCA	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	28, 52
Kzo9I	GATC	1 cut(s)	27
MaeIII	GTNAC	6 cut(s)	20, 56, 68, 92, 128, 185
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MluCI	AATT	2 cut(s)	35, 233
MseI	TTAA	3 cut(s)	204, 218, 278
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	28, 52
NmuCI	GTSAC	5 cut(s)	20, 56, 68, 92, 128
PflFI	GACNNNGTC	2 cut(s)	110, 134
PsyI	GACNNNGTC	2 cut(s)	110, 134
SaqAI	TTAA	3 cut(s)	204, 218, 278
Sau3AI	GATC	1 cut(s)	27
SgeI	CNNG	6 cut(s)	25, 37, 61, 73, 85, 177
Sse9I	AATT	2 cut(s)	35, 233
SspI	AATATT	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	56, 64, 92, 100
TasI	AATT	2 cut(s)	35, 233
Tru1I	TTAA	3 cut(s)	204, 218, 278
Tru9I	TTAA	3 cut(s)	204, 218, 278
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	5 cut(s)	20, 56, 68, 92, 128
Tsp45I	GTSAC	5 cut(s)	20, 56, 68, 92, 128
TspDTI	ATGAA	2 cut(s)	65, 101
TspRI	CASTG	1 cut(s)	105
Tth111I	GACNNNGTC	2 cut(s)	110, 134
XapI	RAATTY	2 cut(s)	35, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.