pycom16g00240

Porphobilinogen deaminase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
134188 .. 137067
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00240.3

Sequence Viewer

Length: 1167 bp
ATGGAGGTCCTTTGTTCTTCTTCTTCCTGCTCCTCGTCTCTTTTGACCAAGCAGGCGCTTCCTTCATGCTCTTCAATCAACTTCGCAGCAGGAGTTGGCTCCGTCTCAGTCCTCCGCTCCTCCATGCCCTCCCTCAAGACTCGAGCTTTTCCCAACTCCATCAGAAAACACAGTCTAATTGGGATCCCAAGGGCCTCCGTCGCTGTTGAGCAGCAGATCCAGAAGTCCAAAGTTGCCCTAATCAAAATTGGCACCCGAGGAAGCCCATTAGCACTTGCTCAGGCTTACGAGACAAGAGAGAAACTCATGGCATCGCACCCCGAGCTAGCCGAAGAGGGCGCAATTCAGATTGTAATCATAAAAACTACCGGTGATAAAATACTGAGTCAGCCCCTTGCAGACATTGGCGGGAAGGGTTTGTTCACCAAGGAAATAGATGAGGCACTCATCAATGGTGATATTGACATTGCTGTCCACTCAATGAAAGACGTGCCTACCTACTTACCCGAGCAGACAGTTCTGCCTTGCAATCTTCCACGAGAGGATGTCCGAGATGCATTTATATCCTTAACTGCATCTTCTCTTGCAGGTCTGCCAGCTGGAAGCACTGTTGGTACTGCTTCACTTAGAAGAAAGTCACAGATACTCCATAGGTTTCCAACACTCAATGTGCAGGAGAATTTTCGGGGTAACGTCCAGACACGGTTGAAAAAGCTTAATGAAAAGGTGGTCGAAGCAACCTTATTAGCATTAGCTGGACTCAAACGCTTAGATATGACAGAAAATGTGACTTCAATTCTTTCACTAGATGAAATGCTTCCAGCAGTTGCCCAAGGGGCGATTGGAATTGCCTGCCGAACCAATGACGATAAAATGGCTAATTACATAGCTTCATTGAATCATGAGGAAACAAGACTAGCAGTTGCATGCGAGAGGTCGTTCCTTCTGACCCTGGATGGGTCTTGTCGAACTCCTATTGCTGGATATGCTAGCAAAGATGAGGATGGTAATTGCATATTCAAAGGGTTGGTGGCTTCCCCTGATGGAACCCGTGTACTTGAAACTTCTAGGAAAGGCCCATATGCTTCTCAAGATATGATCGACATGGGTAAGGATGCAGGCCAGGAACTTCTGTCACGTGCAGGTCCAGGTTTTTTCGGTATTTAA

Protein Analysis

389

Amino Acids

41.44

Weight (kDa)

8.06

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
Acc36I ACCTGC 2 cut(s) 578, 1133
AccB1I GGYRCC 1 cut(s) 251
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 2 cut(s) 115, 408
AclWI GGATC 3 cut(s) 178, 191, 211
AcsI RAATTY 1 cut(s) 679
AcvI CACGTG 1 cut(s) 1139
AfaI GTAC 2 cut(s) 616, 1056
AfiI CCNNNNNNNGG 2 cut(s) 957, 980
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 6 cut(s) 75, 709, 795, 898, 1021, 1061
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 3 cut(s) 951, 1122, 1147
AluBI AGCT 6 cut(s) 146, 325, 599, 715, 755, 890
AluI AGCT 6 cut(s) 146, 325, 599, 715, 755, 890
Alw26I GTCTC 3 cut(s) 42, 109, 284
AlwI GGATC 3 cut(s) 178, 191, 211
Ama87I CYCGRG 4 cut(s) 141, 255, 320, 506
AoxI GGCC 3 cut(s) 192, 1075, 1120
ApeKI GCWGC 2 cut(s) 86, 211
ApoI RAATTY 1 cut(s) 679
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 816
AspLEI GCGC 2 cut(s) 58, 341
AspS9I GGNCC 4 cut(s) 7, 192, 1076, 1145
AsuHPI GGTGA 3 cut(s) 383, 415, 467
AsuNHI GCTAGC 2 cut(s) 325, 989
AvaI CYCGRG 4 cut(s) 141, 255, 320, 506
AvaII GGWCC 2 cut(s) 7, 1145
BamHI GGATCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 251
BauI CACGAG 1 cut(s) 537
BbrPI CACGTG 1 cut(s) 1139
BbvI GCAGC 2 cut(s) 98, 223
BccI CCATC 4 cut(s) 167, 950, 998, 1037
BciT130I CCWGG 3 cut(s) 953, 1124, 1149
BcoDI GTCTC 3 cut(s) 42, 109, 284
BfaI CTAG 5 cut(s) 326, 806, 917, 990, 1068
BfoI RGCGCY 1 cut(s) 59
BfuAI ACCTGC 2 cut(s) 578, 1133
BglI GCCNNNNNGGC 1 cut(s) 836
BisI GCNGC 2 cut(s) 87, 212
BlsI GCNGC 2 cut(s) 88, 213
Bme1390I CCNGG 3 cut(s) 953, 1124, 1149
Bme18I GGWCC 2 cut(s) 7, 1145
BmeT110I CYCGRG 4 cut(s) 141, 255, 320, 506
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 4 cut(s) 7, 192, 1076, 1145
BmiI GGNNCC 4 cut(s) 100, 185, 253, 1048
BmrFI CCNGG 3 cut(s) 953, 1124, 1149
BmsI GCATC 4 cut(s) 320, 544, 584, 1105
BmtI GCTAGC 2 cut(s) 329, 993
BplI GAGNNNNNCTC 2 cut(s) 288, 320
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 119, 1074
BsaAI YACGTR 1 cut(s) 1139
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 5 cut(s) 188, 256, 426, 832, 951
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 980
Bse118I RCCGGY 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 3 cut(s) 953, 1124, 1149
BseDI CCNNGG 5 cut(s) 188, 256, 426, 832, 951
BseGI GGATG 4 cut(s) 550, 961, 1009, 1120
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 957, 980
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 120, 293, 374
BseRI GAGGAG 2 cut(s) 22, 109
BseXI GCAGC 2 cut(s) 98, 223
BsgI GTGCAG 2 cut(s) 692, 1161
BshFI GGCC 3 cut(s) 194, 1077, 1122
BshNI GGYRCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 368
BsiHKCI CYCGRG 4 cut(s) 141, 255, 320, 506
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 957, 980
BsmAI GTCTC 3 cut(s) 42, 109, 284
BsmBI CGTCTC 2 cut(s) 42, 109
BsnI GGCC 3 cut(s) 194, 1077, 1122
BsoBI CYCGRG 4 cut(s) 141, 255, 320, 506
Bsp143I GATC 3 cut(s) 183, 216, 1098
BspACI CCGC 2 cut(s) 115, 408
BspANI GGCC 3 cut(s) 194, 1077, 1122
BspCNI CTCAG 3 cut(s) 119, 292, 375
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 4 cut(s) 100, 185, 253, 1048
BspMI ACCTGC 2 cut(s) 578, 1133
BspOI GCTAGC 2 cut(s) 329, 993
BspPI GGATC 3 cut(s) 178, 191, 211
BspQI GCTCTTC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 5 cut(s) 188, 256, 426, 832, 951
BssMI GATC 3 cut(s) 183, 216, 1098
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 3 cut(s) 188, 426, 832
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 3 cut(s) 953, 1124, 1149
Bst4CI ACNGT 4 cut(s) 173, 517, 610, 705
Bst6I CTCTTC 2 cut(s) 76, 327
BstBAI YACGTR 1 cut(s) 1139
BstC8I GCNNGC 7 cut(s) 54, 327, 597, 853, 928, 991, 1120
BstDEI CTNAG 5 cut(s) 106, 279, 383, 626, 769
BstF5I GGATG 4 cut(s) 550, 961, 1009, 1120
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 58, 341
BstKTI GATC 3 cut(s) 186, 219, 1101
BstMAI GTCTC 3 cut(s) 42, 109, 284
BstMBI GATC 3 cut(s) 183, 216, 1098
BstMWI GCNNNNNNNGC 4 cut(s) 200, 322, 836, 986
BstNI CCWGG 3 cut(s) 953, 1124, 1149
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 3 cut(s) 951, 1122, 1147
BstV1I GCAGC 2 cut(s) 98, 223
BstX2I RGATCY 2 cut(s) 183, 216
BstYI RGATCY 2 cut(s) 183, 216
BsuRI GGCC 3 cut(s) 194, 1077, 1122
BtgZI GCGATG 1 cut(s) 297
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 4 cut(s) 550, 961, 1009, 1120
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 2 cut(s) 578, 1133
Cac8I GCNNGC 7 cut(s) 54, 327, 597, 853, 928, 991, 1120
CciI TCATGA 1 cut(s) 901
CfoI GCGC 2 cut(s) 58, 341
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 7, 192, 1076, 1145
Csp6I GTAC 2 cut(s) 615, 1055
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 6 cut(s) 66, 124, 307, 902, 927, 1105
CviQI GTAC 2 cut(s) 615, 1055
DdeI CTNAG 5 cut(s) 106, 279, 383, 626, 769
DpnI GATC 3 cut(s) 185, 218, 1100
DpnII GATC 3 cut(s) 183, 216, 1098
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 76, 327
EarI CTCTTC 2 cut(s) 76, 327
Eco130I CCWWGG 3 cut(s) 188, 426, 832
Eco47I GGWCC 2 cut(s) 7, 1145
Eco72I CACGTG 1 cut(s) 1139
Eco88I CYCGRG 4 cut(s) 141, 255, 320, 506
EcoO109I RGGNCCY 2 cut(s) 7, 192
EcoRII CCWGG 3 cut(s) 951, 1122, 1147
EcoT14I CCWWGG 3 cut(s) 188, 426, 832
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 3 cut(s) 188, 426, 832
Esp3I CGTCTC 2 cut(s) 42, 109
FaeI CATG 6 cut(s) 69, 127, 310, 905, 930, 1108
FatI CATG 6 cut(s) 65, 123, 306, 901, 926, 1104
FauI CCCGC 1 cut(s) 401
FauNDI CATATG 1 cut(s) 1081
Fnu4HI GCNGC 2 cut(s) 87, 212
FokI GGATG 4 cut(s) 557, 968, 1016, 1127
Fsp4HI GCNGC 2 cut(s) 87, 212
FspBI CTAG 5 cut(s) 326, 806, 917, 990, 1068
GlaI GCGC 2 cut(s) 57, 340
GluI GCNGC 2 cut(s) 87, 212
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 3 cut(s) 194, 1077, 1122
HapII CCGG 1 cut(s) 369
HhaI GCGC 2 cut(s) 58, 341
Hin1II CATG 6 cut(s) 69, 127, 310, 905, 930, 1108
Hin6I GCGC 2 cut(s) 56, 339
HinP1I GCGC 2 cut(s) 56, 339
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 4 cut(s) 139, 385, 759, 898
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 383, 415, 467
Hpy166II GTNNAC 3 cut(s) 423, 475, 1055
Hpy188I TCNGA 4 cut(s) 164, 348, 551, 948
Hpy188III TCNNGA 5 cut(s) 136, 220, 697, 902, 1091
Hpy8I GTNNAC 3 cut(s) 423, 475, 1055
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 72, 406, 953
HpyCH4III ACNGT 4 cut(s) 173, 517, 610, 705
HpyCH4IV ACGT 3 cut(s) 489, 693, 1138
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 322, 836, 986
HpyF3I CTNAG 5 cut(s) 106, 279, 383, 626, 769
HpySE526I ACGT 3 cut(s) 489, 693, 1138
Hsp92II CATG 6 cut(s) 69, 127, 310, 905, 930, 1108
HspAI GCGC 2 cut(s) 56, 339
Kzo9I GATC 3 cut(s) 183, 216, 1098
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 3 cut(s) 35, 104, 122
Lsp1109I GCAGC 2 cut(s) 98, 223
LweI GCATC 4 cut(s) 320, 544, 584, 1105
MaeI CTAG 5 cut(s) 326, 806, 917, 990, 1068
MaeII ACGT 3 cut(s) 489, 693, 1138
MaeIII GTNAC 4 cut(s) 636, 689, 787, 1134
MalI GATC 3 cut(s) 185, 218, 1100
MbiI CCGCTC 1 cut(s) 117
MboI GATC 3 cut(s) 183, 216, 1098
MboII GAAGA 8 cut(s) 9, 12, 15, 63, 344, 524, 570, 642
MflI RGATCY 2 cut(s) 183, 216
MluCI AATT 8 cut(s) 177, 246, 342, 679, 795, 846, 880, 1009
MlyI GAGTC 3 cut(s) 133, 394, 753
MmeI TCCRAC 1 cut(s) 683
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 816
MseI TTAA 3 cut(s) 569, 717, 1165
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 3 cut(s) 953, 1124, 1149
MvaI CCWGG 3 cut(s) 953, 1124, 1149
MwoI GCNNNNNNNGC 4 cut(s) 200, 322, 836, 986
NdeI CATATG 1 cut(s) 1081
NdeII GATC 3 cut(s) 183, 216, 1098
NheI GCTAGC 2 cut(s) 325, 989
NlaIII CATG 6 cut(s) 69, 127, 310, 905, 930, 1108
NlaIV GGNNCC 4 cut(s) 100, 185, 253, 1048
NmuCI GTSAC 3 cut(s) 636, 787, 1134
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 930
PaeI GCATGC 1 cut(s) 930
PaeR7I CTCGAG 1 cut(s) 141
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 816
PfeI GAWTC 1 cut(s) 898
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 2 cut(s) 88, 213
PleI GAGTC 3 cut(s) 133, 393, 753
PmaCI CACGTG 1 cut(s) 1139
PmlI CACGTG 1 cut(s) 1139
PpsI GAGTC 3 cut(s) 133, 393, 753
Ppu21I YACGTR 1 cut(s) 1139
PpuMI RGGWCCY 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 3 cut(s) 951, 1122, 1147
PspCI CACGTG 1 cut(s) 1139
PspGI CCWGG 3 cut(s) 951, 1122, 1147
PspN4I GGNNCC 4 cut(s) 100, 185, 253, 1048
PspPI GGNCC 4 cut(s) 7, 192, 1076, 1145
PspPPI RGGWCCY 1 cut(s) 7
PspXI VCTCGAGB 1 cut(s) 141
PsuI RGATCY 2 cut(s) 183, 216
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 2 cut(s) 616, 1056
RsaNI GTAC 2 cut(s) 615, 1055
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 3 cut(s) 569, 717, 1165
SatI GCNGC 2 cut(s) 87, 212
Sau3AI GATC 3 cut(s) 183, 216, 1098
Sau96I GGNCC 4 cut(s) 7, 192, 1076, 1145
SchI GAGTC 3 cut(s) 133, 394, 753
ScrFI CCNGG 3 cut(s) 953, 1124, 1149
SfaNI GCATC 4 cut(s) 320, 544, 584, 1105
Sfr274I CTCGAG 1 cut(s) 141
SinI GGWCC 2 cut(s) 7, 1145
SlaI CTCGAG 1 cut(s) 141
SmlI CTYRAG 3 cut(s) 134, 141, 1089
SmoI CTYRAG 3 cut(s) 134, 141, 1089
SphI GCATGC 1 cut(s) 930
Sse9I AATT 8 cut(s) 177, 246, 342, 679, 795, 846, 880, 1009
SsiI CCGC 2 cut(s) 115, 408
SspMI CTAG 5 cut(s) 326, 806, 917, 990, 1068
StyD4I CCNGG 3 cut(s) 951, 1122, 1147
StyI CCWWGG 3 cut(s) 188, 426, 832
TaaI ACNGT 4 cut(s) 173, 517, 610, 705
TaiI ACGT 3 cut(s) 492, 696, 1141
TaqI TCGA 4 cut(s) 142, 732, 967, 1101
TasI AATT 8 cut(s) 177, 246, 342, 679, 795, 846, 880, 1009
TatI WGTACW 1 cut(s) 1054
TfiI GAWTC 1 cut(s) 898
Tru1I TTAA 3 cut(s) 569, 717, 1165
Tru9I TTAA 3 cut(s) 569, 717, 1165
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 3 cut(s) 636, 787, 1134
TseI GCWGC 2 cut(s) 86, 211
Tsp45I GTSAC 3 cut(s) 636, 787, 1134
TspDTI ATGAA 5 cut(s) 54, 497, 735, 825, 882
TspGWI ACGGA 2 cut(s) 91, 187
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 7, 1145
XapI RAATTY 1 cut(s) 679
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XhoI CTCGAG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 816
XspI CTAG 5 cut(s) 326, 806, 917, 990, 1068
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.