Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Reverse (-)

5170597 .. 5173299

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04700.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGACGCCCTTTACTCTTCTGCTTCAACTAGTTCCTGTTCTTCATCTCTTCCTTTATCTCCAGTCAACTTTGCCCGCGCATCCCTCAAGACTCCTCGGACTCTTGCTTTTCCCAACTGCATCAGAAAACAAACTCATGTCACAAGAGCCTCTTTGGCAGTTGAGCAGCAGGCCCACAATCCCAAACTCGCTGTTATCAAAATTGGTACCAGAGGAAGCCCACTAGCTCTTGCTCAAGCTTATCAAACAAAAGAGAAGCTCATAGCATCACATCCCCACCTAGCTGAAGATGGGGCAATTGAAATTGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCTTGGCCGACATCGGCGGCAAGGGATTATTCACCAAAGAAATTGATGAGGCATTGATAAATGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTTGCTACCCGACAAGACCATTTTGCCTTGCAATCTTCCACGAGAGGACGTCCGAGACGCTTTTATATGCTTAACTGCATCTTCACTAGGAGAGCTGCCGGCCGGTAGCATTATTGGTACTGCTTCGCTTAGACGAAAGTCACAGATACTCCATAGATATCCATCCCTTAAAGTAGAGGAGAACTTTCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAAAAGGTAGTCCAAGCTACCTTGTTGGCGTTAGCTGGGCTGAAACGCCTGAATATGACGGAAAATGTAACTTCGGTTCTCTCATTGGATGAAATGCTTCCTGCTGTGGCCCAAGGGGCAATTGGAATCGCCTGCCGAAGCAATGACGATAAAATGGCTGAATATATTGCTAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGTAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTAATGGAACCCGTGTACTTGAGACATCTAGGAAAGGCCGGTATGCTTATAAGGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACTGGCAGGTCCTGGTTTCTTTGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

374

Amino Acids

40.15

Weight (kDa)

8.86

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	66 - 278	8.9e-79	Porphobilinogen deaminase, dipyromethane cofactor binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1044
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	1088
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	76, 363
AcoI	YGGCCR	2 cut(s)	351, 552
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	2 cut(s)	6, 501
AfaI	GTAC	5 cut(s)	208, 429, 447, 571, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	349, 912, 935
AgsI	TTSAA	4 cut(s)	27, 302, 853, 976
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	906, 1102
AluBI	AGCT	7 cut(s)	227, 239, 259, 284, 547, 692, 710
AluI	AGCT	7 cut(s)	227, 239, 259, 284, 547, 692, 710
Alw26I	GTCTC	2 cut(s)	501, 1010
AlwNI	CAGNNNCTG	1 cut(s)	1103
AoxI	GGCC	5 cut(s)	171, 351, 552, 783, 1030
ApeKI	GCWGC	2 cut(s)	166, 547
Asp700I	GAANNNNTTC	1 cut(s)	771
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	172, 784, 1100
AsuHPI	GGTGA	3 cut(s)	338, 370, 422
AvaII	GGWCC	1 cut(s)	1100
BanI	GGYRCC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	178, 534
BccI	CCATC	5 cut(s)	284, 622, 905, 953, 1048
BciT130I	CCWGG	2 cut(s)	908, 1104
BcoDI	GTCTC	2 cut(s)	501, 1010
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	7 cut(s)	30, 224, 281, 539, 657, 872, 1023
BfuAI	ACCTGC	1 cut(s)	1088
BglI	GCCNNNNNGGC	2 cut(s)	155, 791
BisI	GCNGC	3 cut(s)	167, 364, 548
BlsI	GCNGC	3 cut(s)	168, 365, 549
Bme1390I	CCNGG	2 cut(s)	908, 1104
Bme18I	GGWCC	1 cut(s)	1100
BmgT120I	GGNCC	3 cut(s)	172, 784, 1100
BmiI	GGNNCC	2 cut(s)	208, 1003
BmrFI	CCNGG	2 cut(s)	908, 1104
BmsI	GCATC	6 cut(s)	89, 129, 275, 539, 943, 1060
BoxI	GACNNNNGTC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	3 cut(s)	71, 219, 1034
BsaBI	GATNNNNATC	1 cut(s)	613
BsaHI	GRCGYC	2 cut(s)	6, 501
BsaJI	CCNNGG	4 cut(s)	95, 348, 787, 906
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 912, 935
Bse118I	RCCGGY	3 cut(s)	550, 554, 1032
Bse1I	ACTGG	4 cut(s)	62, 328, 945, 1098
Bse3DI	GCAATG	2 cut(s)	420, 823
Bse8I	GATNNNNATC	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	908, 1104
BseDI	CCNNGG	4 cut(s)	95, 348, 787, 906
BseGI	GGATG	6 cut(s)	80, 271, 614, 769, 916, 1075
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	349, 912, 935
BseMI	GCAATG	2 cut(s)	420, 823
BseNI	ACTGG	4 cut(s)	62, 328, 945, 1098
BseRI	GAGGAG	2 cut(s)	84, 644
BseX3I	CGGCCG	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	178, 534
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	5 cut(s)	173, 353, 554, 785, 1032
BshNI	GGYRCC	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	555
BsiSI	CCGG	3 cut(s)	551, 555, 1033
BslI	CCNNNNNNNGG	3 cut(s)	349, 912, 935
BsmAI	GTCTC	2 cut(s)	501, 1010
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	5 cut(s)	173, 353, 554, 785, 1032
Bsp1407I	TGTACA	1 cut(s)	427
BspACI	CCGC	2 cut(s)	76, 363
BspANI	GGCC	5 cut(s)	173, 353, 554, 785, 1032
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	2 cut(s)	208, 1003
BspMI	ACCTGC	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	420, 823
BsrFI	RCCGGY	3 cut(s)	550, 554, 1032
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	62, 328, 945, 1098
BssAI	RCCGGY	3 cut(s)	550, 554, 1032
BssECI	CCNNGG	4 cut(s)	95, 348, 787, 906
BssNI	GRCGYC	2 cut(s)	6, 501
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	348, 787
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	908, 1104
Bst6I	CTCTTC	2 cut(s)	22, 54
BstACI	GRCGYC	2 cut(s)	6, 501
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	76, 171, 552, 808
BstDEI	CTNAG	2 cut(s)	338, 581
BstF5I	GGATG	6 cut(s)	80, 271, 614, 769, 916, 1075
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	501, 1010
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 791, 941
BstNI	CCWGG	2 cut(s)	908, 1104
BstNSI	RCATGY	1 cut(s)	885
BstPAI	GACNNNNGTC	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	906, 1102
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	178, 534
BstZI	CGGCCG	1 cut(s)	552
BsuRI	GGCC	5 cut(s)	173, 353, 554, 785, 1032
BtsCI	GGATG	6 cut(s)	80, 271, 614, 769, 916, 1075
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	4 cut(s)	76, 171, 552, 808
CaiI	CAGNNNCTG	1 cut(s)	1103
CciI	TCATGA	1 cut(s)	856
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	3 cut(s)	550, 554, 1032
Cfr13I	GGNCC	3 cut(s)	172, 784, 1100
CseI	GACGC	2 cut(s)	14, 518
Csp6I	GTAC	5 cut(s)	207, 428, 446, 570, 1010
CviAII	CATG	4 cut(s)	137, 436, 857, 882
CviQI	GTAC	5 cut(s)	207, 428, 446, 570, 1010
DdeI	CTNAG	2 cut(s)	338, 581
EaeI	YGGCCR	2 cut(s)	351, 552
EagI	CGGCCG	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	22, 54
EarI	CTCTTC	2 cut(s)	22, 54
EclXI	CGGCCG	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	348, 787
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	1100
Eco52I	CGGCCG	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	1100
EcoRII	CCWGG	2 cut(s)	906, 1102
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	348, 787
ErhI	CCWWGG	2 cut(s)	348, 787
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	4 cut(s)	140, 439, 860, 885
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FatI	CATG	4 cut(s)	136, 435, 856, 881
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	167, 364, 548
FokI	GGATG	6 cut(s)	67, 258, 601, 776, 923, 1082
Fsp4HI	GCNGC	3 cut(s)	167, 364, 548
FspBI	CTAG	7 cut(s)	30, 224, 281, 539, 657, 872, 1023
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	167, 364, 548
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	5 cut(s)	173, 353, 554, 785, 1032
HapII	CCGG	3 cut(s)	551, 555, 1033
HgaI	GACGC	2 cut(s)	14, 518
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	6, 501
Hin1II	CATG	4 cut(s)	140, 439, 860, 885
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	4 cut(s)	91, 100, 801, 853
HpaII	CCGG	3 cut(s)	551, 555, 1033
HphI	GGTGA	3 cut(s)	338, 370, 422
Hpy166II	GTNNAC	3 cut(s)	67, 430, 1010
Hpy188I	TCNGA	3 cut(s)	99, 125, 506
Hpy188III	TCNNGA	3 cut(s)	88, 652, 857
Hpy8I	GTNNAC	3 cut(s)	67, 430, 1010
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	120, 483, 530, 881, 969, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 791, 941
HpyF3I	CTNAG	2 cut(s)	338, 581
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	2 cut(s)	6, 501
Hsp92II	CATG	4 cut(s)	140, 439, 860, 885
HspAI	GCGC	1 cut(s)	78
KpnI	GGTACC	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	550
KroNI	GCCGGC	1 cut(s)	552
Lsp1109I	GCAGC	2 cut(s)	178, 534
LweI	GCATC	6 cut(s)	89, 129, 275, 539, 943, 1060
MaeI	CTAG	7 cut(s)	30, 224, 281, 539, 657, 872, 1023
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	5 cut(s)	139, 410, 591, 742, 962
MboII	GAAGA	7 cut(s)	9, 33, 41, 299, 479, 525, 872
MfeI	CAATTG	2 cut(s)	297, 795
MluCI	AATT	6 cut(s)	201, 297, 303, 387, 795, 848
MlyI	GAGTC	2 cut(s)	85, 94
MnlI	CCTC	8 cut(s)	95, 105, 160, 206, 388, 490, 622, 882
MroNI	GCCGGC	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	5 cut(s)	524, 621, 662, 672, 1089
MspI	CCGG	3 cut(s)	551, 555, 1033
MspR9I	CCNGG	2 cut(s)	908, 1104
MunI	CAATTG	2 cut(s)	297, 795
MvaI	CCWGG	2 cut(s)	908, 1104
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	155, 791, 941
NaeI	GCCGGC	1 cut(s)	552
NgoMIV	GCCGGC	1 cut(s)	550
NlaIII	CATG	4 cut(s)	140, 439, 860, 885
NlaIV	GGNNCC	2 cut(s)	208, 1003
NmuCI	GTSAC	3 cut(s)	139, 410, 591
NspI	RCATGY	1 cut(s)	885
PagI	TCATGA	1 cut(s)	856
PdiI	GCCGGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	801, 853
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	168, 365, 549
PleI	GAGTC	2 cut(s)	85, 94
PpsI	GAGTC	2 cut(s)	85, 94
PpuMI	RGGWCCY	1 cut(s)	1100
PshAI	GACNNNNGTC	1 cut(s)	589
PsiI	TTATAA	1 cut(s)	1044
Psp5II	RGGWCCY	1 cut(s)	1100
Psp6I	CCWGG	2 cut(s)	906, 1102
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	2 cut(s)	906, 1102
PspN4I	GGNNCC	2 cut(s)	208, 1003
PspPI	GGNCC	3 cut(s)	172, 784, 1100
PspPPI	RGGWCCY	1 cut(s)	1100
PsrI	GAACNNNNNNTAC	2 cut(s)	735, 767
PstNI	CAGNNNCTG	1 cut(s)	1103
RsaI	GTAC	5 cut(s)	208, 429, 447, 571, 1011
RsaNI	GTAC	5 cut(s)	207, 428, 446, 570, 1010
SaqAI	TTAA	5 cut(s)	524, 621, 662, 672, 1089
SatI	GCNGC	3 cut(s)	167, 364, 548
Sau96I	GGNCC	3 cut(s)	172, 784, 1100
SchI	GAGTC	2 cut(s)	85, 94
ScrFI	CCNGG	2 cut(s)	908, 1104
SfaNI	GCATC	6 cut(s)	89, 129, 275, 539, 943, 1060
SinI	GGWCC	1 cut(s)	1100
SmlI	CTYRAG	3 cut(s)	86, 234, 1013
SmoI	CTYRAG	3 cut(s)	86, 234, 1013
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	6 cut(s)	201, 297, 303, 387, 795, 848
SsiI	CCGC	2 cut(s)	76, 363
SspMI	CTAG	7 cut(s)	30, 224, 281, 539, 657, 872, 1023
StyD4I	CCNGG	2 cut(s)	906, 1102
StyI	CCWWGG	2 cut(s)	348, 787
TaiI	ACGT	1 cut(s)	504
TasI	AATT	6 cut(s)	201, 297, 303, 387, 795, 848
TatI	WGTACW	2 cut(s)	427, 1009
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	801, 853
Tru1I	TTAA	5 cut(s)	524, 621, 662, 672, 1089
Tru9I	TTAA	5 cut(s)	524, 621, 662, 672, 1089
TseFI	GTSAC	3 cut(s)	139, 410, 591
TseI	GCWGC	2 cut(s)	166, 547
Tsp45I	GTSAC	3 cut(s)	139, 410, 591
TspDTI	ATGAA	5 cut(s)	33, 452, 690, 780, 873
TspGWI	ACGGA	1 cut(s)	749
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	7 cut(s)	30, 224, 281, 539, 657, 872, 1023
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.