Rh1AG104400

Porphobilinogen deaminase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
18161839 .. 18166648
4810 bp
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UTR
Exon/CDS
Intron
Rh1AG104400.1

Sequence Viewer

Length: 1527 bp
ATGGAGGCCCTTTATTCCTCTGCTTCTACATGTTCCTGTTCTTCATCTCTTCCTTTATGCCCAGTCAACTTCTCCCGCGCATCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAGTTGCATCAGAAAACACACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCGAAAATCCCAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGCCCACTAGCTCTTGCTCAAGCTTATCAAACTAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGAGCAATTCAAATCGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCCTGGCCGACATCGGCGGCAAGGGACTGTTTACTAAGGAAATCGATGAGGCATTGATAAATGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCTGACAAGACAATTTTGCCTTGCAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCATCTTCACTAGCAGAACTGCCAGCTGGGAGTGTTATTGGTACTGCATCGCTTAGAAGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGAGAACTTTCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAAAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGCGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGTCGCCCAAGGGGCAATTGGAATTGCCTGCCGGAGCAATGACGATAAAATGGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTGATGGAACCCGCGTATTAGAGAGGTCTAGGAAAGGCCTGTATGCTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGATTCCGAGACCCCCTTCTACAAGCTTTCGATCAAGGGAAGAAATGACGGTAGTGCATCCTTCCAGAAGTTTCCTGCAAATGGTGGACTAAACCCTCCTCACACGCACCCTCGCTCATCTGAACTTTGGCTCCTTGTTGCTGGTTCCTTGGAAGTAGGATTTGTCGACACAAAGAAAGTTCTGTATACTCAAAAGCTTCAAGTTGGTGACATTTTTGTGTTTCCAAAGGGACTAGTCCACAATCAGTATAACTCACAGCCAAACATGCCTTCTTTTGCTGTTTCAGCATTTGGAAGTGCAAATGCTGGAACAGTTTCAGTGCCATGGTCAGTGTTTGCCACAGGAATTGATGATGAGATTCTCGCTAAATCATTCAAGACTGATGTTGATACCATTCGGAAGATCAAGGTTGGCCTCACCTCTAAATAA

Protein Analysis

508

Amino Acids

55.02

Weight (kDa)

8.82

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porphobil_deam PF01379 66 - 278 4.4e-78 Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC PF03900 291 - 364 4.2e-14 Porphobilinogen deaminase, C-terminal domain
Cupin_1 PF00190 382 - 497 2.9e-26 Cupin
Cupin_2 PF07883 389 - 450 9.7e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 2 cut(s) 1263, 1283
AccII CGCG 2 cut(s) 78, 1008
AciI CCGC 4 cut(s) 76, 363, 734, 1006
AcoI YGGCCR 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 429, 447, 571
AfiI CCNNNNNNNGG 5 cut(s) 349, 730, 912, 935, 1178
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 5 cut(s) 302, 853, 976, 1298, 1474
AhlI ACTAGT 1 cut(s) 1330
AjnI CCWGG 2 cut(s) 348, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 1351, 1383
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
Alw26I GTCTC 1 cut(s) 1100
AoxI GGCC 4 cut(s) 6, 351, 1030, 1510
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
Asp700I GAANNNNTTC 2 cut(s) 771, 1411
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 338, 422, 1316, 1507
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 178
BccI CCATC 4 cut(s) 905, 953, 992, 1048
BciT130I CCWGG 2 cut(s) 350, 908
BcoDI GTCTC 1 cut(s) 1100
BcuI ACTAGT 1 cut(s) 1330
BfaI CTAG 6 cut(s) 224, 539, 657, 872, 1023, 1331
BglI GCCNNNNNGGC 2 cut(s) 155, 791
BisI GCNGC 2 cut(s) 167, 364
BlsI GCNGC 2 cut(s) 168, 365
Bme1390I CCNGG 2 cut(s) 350, 908
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 4 cut(s) 208, 1003, 1229, 1243
BmrFI CCNGG 2 cut(s) 350, 908
BmrI ACTGGG 2 cut(s) 56, 108
BmuI ACTGGG 2 cut(s) 56, 108
BpuEI CTTGAG 2 cut(s) 71, 219
Bsa29I ATCGAT 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 5 cut(s) 348, 787, 906, 1245, 1421
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 730, 912, 935, 1178
Bse1I ACTGG 4 cut(s) 62, 114, 328, 765
Bse3DI GCAATG 4 cut(s) 261, 420, 614, 823
BseBI CCWGG 2 cut(s) 350, 908
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 5 cut(s) 348, 787, 906, 1245, 1421
BseGI GGATG 7 cut(s) 80, 271, 505, 769, 916, 1075, 1154
BseLI CCNNNNNNNGG 5 cut(s) 349, 730, 912, 935, 1178
BseMI GCAATG 4 cut(s) 261, 420, 614, 823
BseNI ACTGG 4 cut(s) 62, 114, 328, 765
BseRI GAGGAG 2 cut(s) 644, 1185
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 2 cut(s) 554, 710
Bsh1236I CGCG 2 cut(s) 78, 1008
BshFI GGCC 4 cut(s) 8, 353, 1032, 1512
BshNI GGYRCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 390
BsiSI CCGG 1 cut(s) 811
BslFI GGGAC 2 cut(s) 384, 1341
BslI CCNNNNNNNGG 5 cut(s) 349, 730, 912, 935, 1178
BsmAI GTCTC 1 cut(s) 1100
BsmFI GGGAC 2 cut(s) 384, 1341
BsnI GGCC 4 cut(s) 8, 353, 1032, 1512
Bso31I GGTCTC 1 cut(s) 1100
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 1128, 1500
Bsp19I CCATGG 1 cut(s) 1421
BspACI CCGC 4 cut(s) 76, 363, 734, 1006
BspANI GGCC 4 cut(s) 8, 353, 1032, 1512
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 2 cut(s) 78, 1008
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 4 cut(s) 208, 1003, 1229, 1243
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1100
BsrDI GCAATG 4 cut(s) 261, 420, 614, 823
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 4 cut(s) 62, 114, 328, 765
BssECI CCNNGG 5 cut(s) 348, 787, 906, 1245, 1421
BssMI GATC 2 cut(s) 1128, 1500
BssNAI GTATAC 1 cut(s) 1284
BssT1I CCWWGG 3 cut(s) 787, 1245, 1421
Bst1107I GTATAC 1 cut(s) 1284
Bst2UI CCWGG 2 cut(s) 350, 908
Bst4CI ACNGT 3 cut(s) 375, 1148, 1411
Bst6I CTCTTC 2 cut(s) 54, 282
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 552, 808, 946
BstDEI CTNAG 4 cut(s) 280, 338, 381, 581
BstDSI CCRYGG 1 cut(s) 1421
BstF5I GGATG 7 cut(s) 80, 271, 505, 769, 916, 1075, 1154
BstFNI CGCG 2 cut(s) 78, 1008
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 1131, 1503
BstMAI GTCTC 1 cut(s) 1100
BstMBI GATC 2 cut(s) 1128, 1500
BstMWI GCNNNNNNNGC 5 cut(s) 155, 791, 941, 1363, 1382
BstNI CCWGG 2 cut(s) 350, 908
BstNSI RCATGY 3 cut(s) 33, 885, 1366
BstSCI CCNGG 2 cut(s) 348, 906
BstUI CGCG 2 cut(s) 78, 1008
BstV1I GCAGC 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 1284
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 4 cut(s) 8, 353, 1032, 1512
BsuTUI ATCGAT 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 1421
BtgZI GCGATG 2 cut(s) 252, 561
BtsCI GGATG 7 cut(s) 80, 271, 505, 769, 916, 1075, 1154
BtsIMutI CAGTG 3 cut(s) 758, 1422, 1434
Cac8I GCNNGC 3 cut(s) 552, 808, 946
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 3 cut(s) 428, 446, 570
CspCI CAANNNNNGTGG 2 cut(s) 1426, 1461
CviAII CATG 7 cut(s) 30, 137, 436, 857, 882, 1363, 1422
CviQI GTAC 3 cut(s) 428, 446, 570
DdeI CTNAG 4 cut(s) 280, 338, 381, 581
DpnI GATC 2 cut(s) 1130, 1502
DpnII GATC 2 cut(s) 1128, 1500
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 54, 282
EarI CTCTTC 2 cut(s) 54, 282
EciI GGCGGA 1 cut(s) 749
Eco130I CCWWGG 3 cut(s) 787, 1245, 1421
Eco147I AGGCCT 1 cut(s) 1032
Eco31I GGTCTC 1 cut(s) 1100
Eco32I GATATC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 348, 906
EcoRV GATATC 1 cut(s) 611
EcoT14I CCWWGG 3 cut(s) 787, 1245, 1421
EcoT22I ATGCAT 1 cut(s) 514
ErhI CCWWGG 3 cut(s) 787, 1245, 1421
FaeI CATG 7 cut(s) 33, 140, 439, 860, 885, 1366, 1425
FaqI GGGAC 2 cut(s) 384, 1341
FatI CATG 7 cut(s) 29, 136, 435, 856, 881, 1362, 1421
FauI CCCGC 2 cut(s) 83, 1013
FblI GTMKAC 2 cut(s) 1263, 1283
Fnu4HI GCNGC 2 cut(s) 167, 364
FokI GGATG 7 cut(s) 67, 258, 512, 776, 923, 1082, 1141
Fsp4HI GCNGC 2 cut(s) 167, 364
FspBI CTAG 6 cut(s) 224, 539, 657, 872, 1023, 1331
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 167, 364
GsaI CCCAGC 2 cut(s) 558, 714
HaeIII GGCC 4 cut(s) 8, 353, 1032, 1512
HapII CCGG 1 cut(s) 811
HhaI GCGC 1 cut(s) 80
Hin1II CATG 7 cut(s) 33, 140, 439, 860, 885, 1366, 1425
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 2 cut(s) 67, 1264
HindII GTYRAC 2 cut(s) 67, 1264
HindIII AAGCTT 3 cut(s) 237, 1121, 1292
HinfI GANTC 4 cut(s) 751, 853, 1100, 1456
HpaII CCGG 1 cut(s) 811
HphI GGTGA 4 cut(s) 338, 422, 1316, 1507
Hpy166II GTNNAC 7 cut(s) 67, 378, 430, 1184, 1264, 1284, 1336
Hpy188I TCNGA 5 cut(s) 125, 175, 1105, 1219, 1497
Hpy188III TCNNGA 7 cut(s) 88, 142, 506, 652, 857, 1162, 1474
Hpy8I GTNNAC 7 cut(s) 67, 378, 430, 1184, 1264, 1284, 1336
HpyAV CCTTC 4 cut(s) 497, 1123, 1168, 1377
HpyCH4III ACNGT 3 cut(s) 375, 1148, 1411
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 791, 941, 1363, 1382
HpyF3I CTNAG 4 cut(s) 280, 338, 381, 581
Hsp92II CATG 7 cut(s) 33, 140, 439, 860, 885, 1366, 1425
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 1128, 1500
LmnI GCTCC 3 cut(s) 293, 813, 1233
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 6 cut(s) 224, 539, 657, 872, 1023, 1331
MaeIII GTNAC 5 cut(s) 139, 410, 742, 962, 1304
MalI GATC 2 cut(s) 1130, 1502
MboI GATC 2 cut(s) 1128, 1500
MboII GAAGA 8 cut(s) 33, 41, 299, 525, 597, 872, 1149, 1510
MfeI CAATTG 1 cut(s) 795
MluCI AATT 7 cut(s) 201, 297, 471, 795, 801, 848, 1443
Mph1103I ATGCAT 1 cut(s) 514
MroXI GAANNNNTTC 2 cut(s) 771, 1411
MseI TTAA 5 cut(s) 524, 621, 662, 672, 1089
MslI CAYNNNNRTG 3 cut(s) 135, 517, 1313
MspA1I CMGCKG 2 cut(s) 554, 779
MspI CCGG 1 cut(s) 811
MspR9I CCNGG 2 cut(s) 350, 908
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 2 cut(s) 350, 908
MvnI CGCG 2 cut(s) 78, 1008
MwoI GCNNNNNNNGC 5 cut(s) 155, 791, 941, 1363, 1382
NcoI CCATGG 1 cut(s) 1421
NdeII GATC 2 cut(s) 1128, 1500
NlaIII CATG 7 cut(s) 33, 140, 439, 860, 885, 1366, 1425
NlaIV GGNNCC 4 cut(s) 208, 1003, 1229, 1243
NmuCI GTSAC 3 cut(s) 139, 410, 1304
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 3 cut(s) 33, 885, 1366
PagI TCATGA 1 cut(s) 856
PceI AGGCCT 1 cut(s) 1032
PciI ACATGT 1 cut(s) 29
PdmI GAANNNNTTC 2 cut(s) 771, 1411
PfeI GAWTC 4 cut(s) 751, 853, 1100, 1456
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 2 cut(s) 168, 365
PscI ACATGT 1 cut(s) 29
PsiI TTATAA 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 348, 906
PspFI CCCAGC 2 cut(s) 554, 710
PspGI CCWGG 2 cut(s) 348, 906
PspN4I GGNNCC 4 cut(s) 208, 1003, 1229, 1243
PspPI GGNCC 1 cut(s) 7
PvuII CAGCTG 2 cut(s) 554, 779
RsaI GTAC 3 cut(s) 429, 447, 571
RsaNI GTAC 3 cut(s) 428, 446, 570
RseI CAYNNNNRTG 3 cut(s) 135, 517, 1313
SalI GTCGAC 1 cut(s) 1262
SaqAI TTAA 5 cut(s) 524, 621, 662, 672, 1089
SatI GCNGC 2 cut(s) 167, 364
Sau3AI GATC 2 cut(s) 1128, 1500
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 350, 908
SmiMI CAYNNNNRTG 3 cut(s) 135, 517, 1313
SmlI CTYRAG 2 cut(s) 86, 234
SmoI CTYRAG 2 cut(s) 86, 234
SpeI ACTAGT 1 cut(s) 1330
Sse9I AATT 7 cut(s) 201, 297, 471, 795, 801, 848, 1443
SseBI AGGCCT 1 cut(s) 1032
SsiI CCGC 4 cut(s) 76, 363, 734, 1006
SspMI CTAG 6 cut(s) 224, 539, 657, 872, 1023, 1331
StuI AGGCCT 1 cut(s) 1032
StyD4I CCNGG 2 cut(s) 348, 906
StyI CCWWGG 3 cut(s) 787, 1245, 1421
TaaI ACNGT 3 cut(s) 375, 1148, 1411
TaqI TCGA 6 cut(s) 97, 162, 390, 749, 1127, 1263
TasI AATT 7 cut(s) 201, 297, 471, 795, 801, 848, 1443
TatI WGTACW 1 cut(s) 427
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 4 cut(s) 751, 853, 1100, 1456
Tru1I TTAA 5 cut(s) 524, 621, 662, 672, 1089
Tru9I TTAA 5 cut(s) 524, 621, 662, 672, 1089
TscAI CASTG 3 cut(s) 765, 1422, 1434
TseFI GTSAC 3 cut(s) 139, 410, 1304
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 3 cut(s) 139, 410, 1304
TspDTI ATGAA 5 cut(s) 33, 452, 690, 780, 873
TspRI CASTG 3 cut(s) 765, 1422, 1434
Van91I CCANNNNNTGG 1 cut(s) 349
XceI RCATGY 3 cut(s) 33, 885, 1366
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
XmiI GTMKAC 2 cut(s) 1263, 1283
XmnI GAANNNNTTC 2 cut(s) 771, 1411
XspI CTAG 6 cut(s) 224, 539, 657, 872, 1023, 1331
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.