Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00746

Orthogroup ID

OG0004391

Physical Location & Seq

Genomic Coordinates Forward (+)

39296 .. 41214

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGCCCTTTATTCTTCTGCTTCTACTTGTTCTTGTTCTTCATCTCTTCCTTTATGCCCAGTCAACTTCTCCCGCGCATCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAATTGCATCAGAAAACACACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCGAAAATCCCAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGCCCACTAGCTCTTGCTCAAGCTTATCAAACAAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGAGCAATTCAAATCGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCCTGGCCGACATCGGCGGCAAGGGACTGTTTACTAAGGAAATCGATGAGGCATTGATAAACGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCTGACAAGACAATTTTGCCTTGCAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCGTCTTCACTAGCAGAACTGCCAGCTGGGAGTGTTATTGGTACTGCCTCACTTAGACGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGAGAACTTTCGAGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGTGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTGATGGAACCCGCGTACTAGAGACGTCTAGGAAAGGCCTGTATGCTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGGTCCTGGCTTCTTTGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004418 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016070 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:1900865 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Porphobil_deam Porphobil_deamC

Protein Analysis

356

Amino Acids

38.57

Weight (kDa)

8.44

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porphobil_deam	PF01379	66 - 261	2.6e-69	Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC	PF03900	274 - 347	1e-14	Porphobilinogen deaminase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08280
fragaria_vesca	FvH4_4g37020 FvH4_7g04700
malus_domestica	MD13G1004100.v1.1 MD16G1003400.v1.1
prunus_persica	Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1
pyrus_communis	pycom13g00340 pycom16g00240
rosa_chinensis	RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801
rosa_laevigata	RLG00000005629 RLG00000029832
rosa_multiflora	Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003
rosa_roxburghii	Rroxscaffold_4G00320380 Rroxscaffold_5G00387180
rosa_rugosa	Rorug01G0085800 Rorug01G0085900 Rorug04G0374900
rosa_samantha	Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000
rosa_wichuraiana	Rw0G015900 Rw4G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AatII	GACGTC	1 cut(s)	971
Acc36I	ACCTGC	1 cut(s)	1037
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	2 cut(s)	78, 957
AciI	CCGC	3 cut(s)	76, 363, 955
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	968
AfaI	GTAC	4 cut(s)	429, 447, 571, 960
AfiI	CCNNNNNNNGG	4 cut(s)	349, 730, 861, 884
AgsI	TTSAA	3 cut(s)	302, 802, 925
AjnI	CCWGG	3 cut(s)	348, 855, 1051
AluBI	AGCT	8 cut(s)	227, 239, 259, 284, 554, 692, 710, 779
AluI	AGCT	8 cut(s)	227, 239, 259, 284, 554, 692, 710, 779
Alw26I	GTCTC	1 cut(s)	959
AlwNI	CAGNNNCTG	2 cut(s)	782, 1052
AoxI	GGCC	3 cut(s)	6, 351, 979
ApeKI	GCWGC	2 cut(s)	166, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
Asp700I	GAANNNNTTC	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	7, 1049
AsuHPI	GGTGA	2 cut(s)	338, 422
AvaII	GGWCC	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	178, 766
BccI	CCATC	4 cut(s)	854, 902, 941, 997
BciT130I	CCWGG	3 cut(s)	350, 857, 1053
BcoDI	GTCTC	1 cut(s)	959
BfaI	CTAG	6 cut(s)	224, 539, 657, 821, 962, 972
BfuAI	ACCTGC	1 cut(s)	1037
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	167, 364, 780
BlsI	GCNGC	3 cut(s)	168, 365, 781
Bme1390I	CCNGG	3 cut(s)	350, 857, 1053
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	2 cut(s)	7, 1049
BmiI	GGNNCC	2 cut(s)	208, 952
BmrFI	CCNGG	3 cut(s)	350, 857, 1053
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	7 cut(s)	89, 129, 275, 280, 499, 892, 1009
BmuI	ACTGGG	1 cut(s)	56
BoxI	GACNNNNGTC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	71, 219
Bsa29I	ATCGAT	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	968
BsaJI	CCNNGG	2 cut(s)	348, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 730, 861, 884
Bse1I	ACTGG	3 cut(s)	62, 328, 765
Bse3DI	GCAATG	3 cut(s)	261, 420, 614
BseBI	CCWGG	3 cut(s)	350, 857, 1053
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	348, 855
BseGI	GGATG	6 cut(s)	80, 271, 505, 769, 865, 1024
BseLI	CCNNNNNNNGG	4 cut(s)	349, 730, 861, 884
BseMI	GCAATG	3 cut(s)	261, 420, 614
BseNI	ACTGG	3 cut(s)	62, 328, 765
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	2 cut(s)	178, 766
BseYI	CCCAGC	2 cut(s)	554, 710
Bsh1236I	CGCG	2 cut(s)	78, 957
BshFI	GGCC	3 cut(s)	8, 353, 981
BshNI	GGYRCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	349, 730, 861, 884
BsmAI	GTCTC	1 cut(s)	959
BsmBI	CGTCTC	1 cut(s)	959
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	8, 353, 981
Bsp1407I	TGTACA	1 cut(s)	427
BspACI	CCGC	3 cut(s)	76, 363, 955
BspANI	GGCC	3 cut(s)	8, 353, 981
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	78, 957
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	208, 952
BspMI	ACCTGC	1 cut(s)	1037
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	3 cut(s)	261, 420, 614
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	62, 328, 765
BssECI	CCNNGG	2 cut(s)	348, 855
BssNI	GRCGYC	1 cut(s)	968
Bst2UI	CCWGG	3 cut(s)	350, 857, 1053
Bst4CI	ACNGT	2 cut(s)	375, 410
Bst6I	CTCTTC	2 cut(s)	54, 282
BstACI	GRCGYC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	552, 895
BstDEI	CTNAG	4 cut(s)	280, 338, 381, 581
BstF5I	GGATG	6 cut(s)	80, 271, 505, 769, 865, 1024
BstFNI	CGCG	2 cut(s)	78, 957
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	959
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 890
BstNI	CCWGG	3 cut(s)	350, 857, 1053
BstNSI	RCATGY	1 cut(s)	834
BstPAI	GACNNNNGTC	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	348, 855, 1051
BstUI	CGCG	2 cut(s)	78, 957
BstV1I	GCAGC	2 cut(s)	178, 766
BstV2I	GAAGAC	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	8, 353, 981
BsuTUI	ATCGAT	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	6 cut(s)	80, 271, 505, 769, 865, 1024
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	1 cut(s)	1037
Cac8I	GCNNGC	2 cut(s)	552, 895
CaiI	CAGNNNCTG	2 cut(s)	782, 1052
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	7, 1049
ClaI	ATCGAT	1 cut(s)	390
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	4 cut(s)	428, 446, 570, 959
CviAII	CATG	4 cut(s)	137, 436, 806, 831
CviQI	GTAC	4 cut(s)	428, 446, 570, 959
DdeI	CTNAG	4 cut(s)	280, 338, 381, 581
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	54, 282
EarI	CTCTTC	2 cut(s)	54, 282
Eco147I	AGGCCT	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	1049
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	7, 1049
EcoRII	CCWGG	3 cut(s)	348, 855, 1051
EcoRV	GATATC	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	4 cut(s)	140, 439, 809, 834
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	4 cut(s)	136, 435, 805, 830
FauI	CCCGC	2 cut(s)	83, 962
Fnu4HI	GCNGC	3 cut(s)	167, 364, 780
FokI	GGATG	6 cut(s)	67, 258, 512, 776, 872, 1031
Fsp4HI	GCNGC	3 cut(s)	167, 364, 780
FspBI	CTAG	6 cut(s)	224, 539, 657, 821, 962, 972
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	167, 364, 780
GsaI	CCCAGC	2 cut(s)	558, 714
HaeIII	GGCC	3 cut(s)	8, 353, 981
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	968
Hin1II	CATG	4 cut(s)	140, 439, 809, 834
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	751, 802
HphI	GGTGA	2 cut(s)	338, 422
Hpy166II	GTNNAC	3 cut(s)	67, 378, 430
Hpy188I	TCNGA	2 cut(s)	125, 175
Hpy188III	TCNNGA	5 cut(s)	88, 142, 506, 652, 806
Hpy8I	GTNNAC	3 cut(s)	67, 378, 430
HpyAV	CCTTC	2 cut(s)	497, 673
HpyCH4III	ACNGT	2 cut(s)	375, 410
HpyCH4IV	ACGT	1 cut(s)	968
HpyCH4V	TGCA	7 cut(s)	120, 266, 483, 512, 830, 918, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 890
HpyF3I	CTNAG	4 cut(s)	280, 338, 381, 581
HpySE526I	ACGT	1 cut(s)	968
Hsp92I	GRCGYC	1 cut(s)	968
Hsp92II	CATG	4 cut(s)	140, 439, 809, 834
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	178, 766
LweI	GCATC	7 cut(s)	89, 129, 275, 280, 499, 892, 1009
MaeI	CTAG	6 cut(s)	224, 539, 657, 821, 962, 972
MaeII	ACGT	1 cut(s)	968
MaeIII	GTNAC	4 cut(s)	139, 410, 742, 911
MboII	GAAGA	6 cut(s)	9, 33, 41, 299, 525, 821
MfeI	CAATTG	1 cut(s)	115
MluCI	AATT	5 cut(s)	115, 201, 297, 471, 797
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	6 cut(s)	524, 621, 662, 672, 1038, 1069
MslI	CAYNNNNRTG	2 cut(s)	135, 517
MspA1I	CMGCKG	2 cut(s)	554, 779
MspR9I	CCNGG	3 cut(s)	350, 857, 1053
MunI	CAATTG	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	350, 857, 1053
MvnI	CGCG	2 cut(s)	78, 957
MwoI	GCNNNNNNNGC	2 cut(s)	155, 890
NlaIII	CATG	4 cut(s)	140, 439, 809, 834
NlaIV	GGNNCC	2 cut(s)	208, 952
NmuCI	GTSAC	2 cut(s)	139, 410
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	834
PagI	TCATGA	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	981
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	751, 802
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	168, 365, 781
PpuMI	RGGWCCY	1 cut(s)	1049
PshAI	GACNNNNGTC	1 cut(s)	589
PsiI	TTATAA	1 cut(s)	993
Psp5II	RGGWCCY	1 cut(s)	1049
Psp6I	CCWGG	3 cut(s)	348, 855, 1051
PspFI	CCCAGC	2 cut(s)	554, 710
PspGI	CCWGG	3 cut(s)	348, 855, 1051
PspN4I	GGNNCC	2 cut(s)	208, 952
PspPI	GGNCC	2 cut(s)	7, 1049
PspPPI	RGGWCCY	1 cut(s)	1049
PstNI	CAGNNNCTG	2 cut(s)	782, 1052
PvuII	CAGCTG	2 cut(s)	554, 779
RsaI	GTAC	4 cut(s)	429, 447, 571, 960
RsaNI	GTAC	4 cut(s)	428, 446, 570, 959
RseI	CAYNNNNRTG	2 cut(s)	135, 517
SaqAI	TTAA	6 cut(s)	524, 621, 662, 672, 1038, 1069
SatI	GCNGC	3 cut(s)	167, 364, 780
Sau96I	GGNCC	2 cut(s)	7, 1049
ScrFI	CCNGG	3 cut(s)	350, 857, 1053
SfaNI	GCATC	7 cut(s)	89, 129, 275, 280, 499, 892, 1009
SinI	GGWCC	1 cut(s)	1049
SmiMI	CAYNNNNRTG	2 cut(s)	135, 517
SmlI	CTYRAG	2 cut(s)	86, 234
SmoI	CTYRAG	2 cut(s)	86, 234
Sse9I	AATT	5 cut(s)	115, 201, 297, 471, 797
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	3 cut(s)	76, 363, 955
SspMI	CTAG	6 cut(s)	224, 539, 657, 821, 962, 972
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	3 cut(s)	348, 855, 1051
TaaI	ACNGT	2 cut(s)	375, 410
TaiI	ACGT	1 cut(s)	971
TaqI	TCGA	5 cut(s)	97, 162, 390, 640, 749
TasI	AATT	5 cut(s)	115, 201, 297, 471, 797
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	751, 802
Tru1I	TTAA	6 cut(s)	524, 621, 662, 672, 1038, 1069
Tru9I	TTAA	6 cut(s)	524, 621, 662, 672, 1038, 1069
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	2 cut(s)	139, 410
TseI	GCWGC	2 cut(s)	166, 779
Tsp45I	GTSAC	2 cut(s)	139, 410
TspDTI	ATGAA	4 cut(s)	33, 452, 780, 822
TspRI	CASTG	1 cut(s)	765
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	1049
XceI	RCATGY	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	6 cut(s)	224, 539, 657, 821, 962, 972
ZraI	GACGTC	1 cut(s)	969
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.