MD16G1003400.v1.1

Porphobilinogen deaminase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
207981 .. 211385
3405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1003400.v1.1.491

Sequence Viewer

Length: 1173 bp
ATGGAGGCCCTTTGTTCTTCTTCTTCTTCTTCCTGCTCCTCGTCTCTTTTGACCAAGCAGGCGCTTCCTTCATGCTCTTCAATCAACTTCGCAGCAGGAGTTGGCTCCGTCTCAGTCCTCCGCTCCTCCATGCCCTCCCTCAAGACTCGATCTTTTCCCAACTCCATCAGAAAACACAGTCTAATTGGGATCCCAAGGGCCTCCGTCGCTGTTGAGCAGCAGATCCAGAAGTCCAAAGTTGCCCTAATCAGAATTGGCACCCGAGGAAGCCCATTAGCACTTGCTCAGGCTTACGAGACAAGAGAGAAACTCATGGCATCGCACCCCGAGCTAGCTGAAGAGGGCGCAATTCAGATTGTTATCATAAAAACTACAGGTGATAAAATACTGAGTCAGCCCCTTGCAGACATTGGCGGGAAGGGTTTGTTCACCAAGGAAATAGATGAGGCACTCATCAATGGTGATATTGACATTGCTGTCCACTCAATGAAAGACGTGCCTACCTACTTACCCGAGCAGACAGTTCTGCCTTGCAACCTTCCACGGGAGGATGTCCGAGATGCATTTATATCCTTAACTTCATCTTCTCTTGCAGATCTGCCAGCTGGAAGCACTGTTGGTACTGCTTCACTTAGAAGAAAGTCACAGATACTCCATAGGTTTCCATCACTCAATGTGCAGGAGAATTTTCGGGGTAACGTCCAGACACGGTTGAAAAAGCTTAATGAAAAGGTGGTCGAAGCAACCTTATTAGCATTAGCTGGACTCAAACGATTAGATATGACAGAAAATGTAACTTCAATTCTTTCACTAGATGAAATGCTTCCAGCAGTTGCTCAGGGGGCGATTGGAATTGCCTGCCGAACCAATGACGATAAAATGGCTCATTACATAGCTTTATTGAATCATGAGGAAACAAGACTAGCAGTTGCATGCGAGAGGTCGTTCCTTCTGACCCTGGATGGGTCTTGTCGAACTCCTATTGCTGGATATGCTAGCAAAGATGAGGATGGTAATTGCATATTCAAAGGGTTGGTGGCTTCCCCTGATGGAACCCGTGTACTTGAAACTTCTAGGAAAGGCCCGTATGCTTCTCAAGATATGATCAACATGGGTAAGGATGCAGGCCAGGAACTTCTTTCACGTGCAGGTCCAGGTTTTTTCGGTATTTAA

Protein Analysis

391

Amino Acids

41.74

Weight (kDa)

8.07

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porphobil_deam PF01379 83 - 295 3.2e-79 Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC PF03900 308 - 380 2.4e-13 Porphobilinogen deaminase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 1139
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 123
AciI CCGC 2 cut(s) 121, 414
AclWI GGATC 3 cut(s) 184, 197, 217
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 357
AcvI CACGTG 1 cut(s) 1145
AfaI GTAC 2 cut(s) 622, 1062
AfiI CCNNNNNNNGG 3 cut(s) 544, 963, 986
AgsI TTSAA 6 cut(s) 81, 715, 801, 904, 1027, 1067
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 3 cut(s) 957, 1128, 1153
AluBI AGCT 6 cut(s) 331, 335, 605, 721, 761, 896
AluI AGCT 6 cut(s) 331, 335, 605, 721, 761, 896
Alw26I GTCTC 3 cut(s) 48, 115, 290
AlwI GGATC 3 cut(s) 184, 197, 217
Ama87I CYCGRG 3 cut(s) 261, 326, 512
AoxI GGCC 4 cut(s) 6, 198, 1081, 1126
ApeKI GCWGC 2 cut(s) 92, 217
ApoI RAATTY 1 cut(s) 685
Asp700I GAANNNNTTC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 64, 347
AspS9I GGNCC 4 cut(s) 7, 198, 1082, 1151
AsuHPI GGTGA 3 cut(s) 389, 421, 473
AsuNHI GCTAGC 2 cut(s) 331, 995
AvaI CYCGRG 3 cut(s) 261, 326, 512
AvaII GGWCC 1 cut(s) 1151
BamHI GGATCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 1145
BbvI GCAGC 2 cut(s) 104, 229
BccI CCATC 5 cut(s) 173, 673, 956, 1004, 1043
BciT130I CCWGG 3 cut(s) 959, 1130, 1155
BclI TGATCA 1 cut(s) 1104
BcoDI GTCTC 3 cut(s) 48, 115, 290
BfaI CTAG 5 cut(s) 332, 812, 923, 996, 1074
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 1139
BglII AGATCT 1 cut(s) 595
BisI GCNGC 2 cut(s) 93, 218
BlsI GCNGC 2 cut(s) 94, 219
Bme1390I CCNGG 3 cut(s) 959, 1130, 1155
Bme18I GGWCC 1 cut(s) 1151
BmeT110I CYCGRG 3 cut(s) 261, 326, 512
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 4 cut(s) 7, 198, 1082, 1151
BmiI GGNNCC 4 cut(s) 106, 191, 259, 1054
BmrFI CCNGG 3 cut(s) 959, 1130, 1155
BmsI GCATC 3 cut(s) 326, 550, 1111
BmtI GCTAGC 2 cut(s) 335, 999
BplI GAGNNNNNCTC 2 cut(s) 294, 326
Bpu10I CCTNAGC 2 cut(s) 285, 837
BpuEI CTTGAG 2 cut(s) 125, 1080
BsaAI YACGTR 1 cut(s) 1145
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 5 cut(s) 194, 262, 432, 542, 957
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 963, 986
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 3 cut(s) 959, 1130, 1155
BseDI CCNNGG 5 cut(s) 194, 262, 432, 542, 957
BseGI GGATG 4 cut(s) 556, 967, 1015, 1126
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 544, 963, 986
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 126, 299, 380, 851
BseRI GAGGAG 2 cut(s) 28, 115
BseXI GCAGC 2 cut(s) 104, 229
BsgI GTGCAG 2 cut(s) 698, 1167
BshFI GGCC 4 cut(s) 8, 200, 1083, 1128
BshNI GGYRCC 1 cut(s) 257
BsiHKCI CYCGRG 3 cut(s) 261, 326, 512
BslI CCNNNNNNNGG 3 cut(s) 544, 963, 986
BsmAI GTCTC 3 cut(s) 48, 115, 290
BsmBI CGTCTC 2 cut(s) 48, 115
BsnI GGCC 4 cut(s) 8, 200, 1083, 1128
BsoBI CYCGRG 3 cut(s) 261, 326, 512
Bsp143I GATC 5 cut(s) 149, 189, 222, 595, 1104
BspACI CCGC 2 cut(s) 121, 414
BspANI GGCC 4 cut(s) 8, 200, 1083, 1128
BspCNI CTCAG 4 cut(s) 125, 298, 381, 850
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 4 cut(s) 106, 191, 259, 1054
BspMI ACCTGC 1 cut(s) 1139
BspOI GCTAGC 2 cut(s) 335, 999
BspPI GGATC 3 cut(s) 184, 197, 217
BspQI GCTCTTC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 5 cut(s) 194, 262, 432, 542, 957
BssMI GATC 5 cut(s) 149, 189, 222, 595, 1104
BssT1I CCWWGG 2 cut(s) 194, 432
Bst2UI CCWGG 3 cut(s) 959, 1130, 1155
Bst4CI ACNGT 4 cut(s) 179, 523, 616, 711
Bst6I CTCTTC 2 cut(s) 82, 333
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 7 cut(s) 60, 333, 603, 859, 934, 997, 1126
BstDEI CTNAG 5 cut(s) 112, 285, 389, 632, 837
BstDSI CCRYGG 1 cut(s) 542
BstF5I GGATG 4 cut(s) 556, 967, 1015, 1126
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 2 cut(s) 64, 347
BstKTI GATC 5 cut(s) 152, 192, 225, 598, 1107
BstMAI GTCTC 3 cut(s) 48, 115, 290
BstMBI GATC 5 cut(s) 149, 189, 222, 595, 1104
BstMWI GCNNNNNNNGC 4 cut(s) 206, 328, 842, 992
BstNI CCWGG 3 cut(s) 959, 1130, 1155
BstNSI RCATGY 1 cut(s) 936
BstSCI CCNGG 3 cut(s) 957, 1128, 1153
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 104, 229
BstX2I RGATCY 3 cut(s) 189, 222, 595
BstYI RGATCY 3 cut(s) 189, 222, 595
BsuRI GGCC 4 cut(s) 8, 200, 1083, 1128
BtgI CCRYGG 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 303
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 4 cut(s) 556, 967, 1015, 1126
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 1139
Cac8I GCNNGC 7 cut(s) 60, 333, 603, 859, 934, 997, 1126
CciI TCATGA 1 cut(s) 907
CfoI GCGC 2 cut(s) 64, 347
Cfr13I GGNCC 4 cut(s) 7, 198, 1082, 1151
Csp6I GTAC 2 cut(s) 621, 1061
CviAII CATG 6 cut(s) 72, 130, 313, 908, 933, 1111
CviQI GTAC 2 cut(s) 621, 1061
DdeI CTNAG 5 cut(s) 112, 285, 389, 632, 837
DpnI GATC 5 cut(s) 151, 191, 224, 597, 1106
DpnII GATC 5 cut(s) 149, 189, 222, 595, 1104
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 82, 333
EarI CTCTTC 2 cut(s) 82, 333
Eco130I CCWWGG 2 cut(s) 194, 432
Eco47I GGWCC 1 cut(s) 1151
Eco57I CTGAAG 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 1145
Eco88I CYCGRG 3 cut(s) 261, 326, 512
EcoO109I RGGNCCY 2 cut(s) 7, 198
EcoRII CCWGG 3 cut(s) 957, 1128, 1153
EcoT14I CCWWGG 2 cut(s) 194, 432
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 194, 432
Esp3I CGTCTC 2 cut(s) 48, 115
FaeI CATG 6 cut(s) 75, 133, 316, 911, 936, 1114
FatI CATG 6 cut(s) 71, 129, 312, 907, 932, 1110
FauI CCCGC 1 cut(s) 407
FbaI TGATCA 1 cut(s) 1104
Fnu4HI GCNGC 2 cut(s) 93, 218
FokI GGATG 4 cut(s) 563, 974, 1022, 1133
Fsp4HI GCNGC 2 cut(s) 93, 218
FspBI CTAG 5 cut(s) 332, 812, 923, 996, 1074
GlaI GCGC 2 cut(s) 63, 346
GluI GCNGC 2 cut(s) 93, 218
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 4 cut(s) 8, 200, 1083, 1128
HhaI GCGC 2 cut(s) 64, 347
Hin1II CATG 6 cut(s) 75, 133, 316, 911, 936, 1114
Hin6I GCGC 2 cut(s) 62, 345
HinP1I GCGC 2 cut(s) 62, 345
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 4 cut(s) 145, 391, 765, 904
HphI GGTGA 3 cut(s) 389, 421, 473
Hpy166II GTNNAC 3 cut(s) 429, 481, 1061
Hpy188I TCNGA 5 cut(s) 170, 251, 354, 557, 954
Hpy188III TCNNGA 5 cut(s) 142, 226, 703, 908, 1097
Hpy8I GTNNAC 3 cut(s) 429, 481, 1061
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 78, 412, 548, 959
HpyCH4III ACNGT 4 cut(s) 179, 523, 616, 711
HpyCH4IV ACGT 3 cut(s) 495, 699, 1144
HpyCH4V TGCA 9 cut(s) 404, 534, 563, 593, 679, 932, 1020, 1124, 1148
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 328, 842, 992
HpyF3I CTNAG 5 cut(s) 112, 285, 389, 632, 837
HpySE526I ACGT 3 cut(s) 495, 699, 1144
Hsp92II CATG 6 cut(s) 75, 133, 316, 911, 936, 1114
HspAI GCGC 2 cut(s) 62, 345
Ksp22I TGATCA 1 cut(s) 1104
Kzo9I GATC 5 cut(s) 149, 189, 222, 595, 1104
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 41, 110, 128
Lsp1109I GCAGC 2 cut(s) 104, 229
LweI GCATC 3 cut(s) 326, 550, 1111
MaeI CTAG 5 cut(s) 332, 812, 923, 996, 1074
MaeII ACGT 3 cut(s) 495, 699, 1144
MaeIII GTNAC 3 cut(s) 642, 695, 793
MalI GATC 5 cut(s) 151, 191, 224, 597, 1106
MbiI CCGCTC 1 cut(s) 123
MboI GATC 5 cut(s) 149, 189, 222, 595, 1104
MboII GAAGA 9 cut(s) 9, 12, 15, 18, 21, 69, 350, 576, 648
MflI RGATCY 3 cut(s) 189, 222, 595
MluCI AATT 7 cut(s) 183, 252, 348, 685, 801, 852, 1015
MlyI GAGTC 3 cut(s) 139, 400, 759
Mph1103I ATGCAT 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 3 cut(s) 575, 723, 1171
MspA1I CMGCKG 1 cut(s) 605
MspR9I CCNGG 3 cut(s) 959, 1130, 1155
MvaI CCWGG 3 cut(s) 959, 1130, 1155
MwoI GCNNNNNNNGC 4 cut(s) 206, 328, 842, 992
NdeII GATC 5 cut(s) 149, 189, 222, 595, 1104
NheI GCTAGC 2 cut(s) 331, 995
NlaIII CATG 6 cut(s) 75, 133, 316, 911, 936, 1114
NlaIV GGNNCC 4 cut(s) 106, 191, 259, 1054
NmuCI GTSAC 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 936
PaeI GCATGC 1 cut(s) 936
PagI TCATGA 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 1 cut(s) 904
PkrI GCNGC 2 cut(s) 94, 219
PleI GAGTC 3 cut(s) 139, 399, 759
PmaCI CACGTG 1 cut(s) 1145
PmlI CACGTG 1 cut(s) 1145
PpsI GAGTC 3 cut(s) 139, 399, 759
Ppu21I YACGTR 1 cut(s) 1145
Psp6I CCWGG 3 cut(s) 957, 1128, 1153
PspCI CACGTG 1 cut(s) 1145
PspGI CCWGG 3 cut(s) 957, 1128, 1153
PspN4I GGNNCC 4 cut(s) 106, 191, 259, 1054
PspPI GGNCC 4 cut(s) 7, 198, 1082, 1151
PsuI RGATCY 3 cut(s) 189, 222, 595
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 2 cut(s) 622, 1062
RsaNI GTAC 2 cut(s) 621, 1061
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 575, 723, 1171
SatI GCNGC 2 cut(s) 93, 218
Sau3AI GATC 5 cut(s) 149, 189, 222, 595, 1104
Sau96I GGNCC 4 cut(s) 7, 198, 1082, 1151
SchI GAGTC 3 cut(s) 139, 400, 759
ScrFI CCNGG 3 cut(s) 959, 1130, 1155
SfaNI GCATC 3 cut(s) 326, 550, 1111
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 1151
SmlI CTYRAG 2 cut(s) 140, 1095
SmoI CTYRAG 2 cut(s) 140, 1095
SphI GCATGC 1 cut(s) 936
Sse9I AATT 7 cut(s) 183, 252, 348, 685, 801, 852, 1015
SsiI CCGC 2 cut(s) 121, 414
SspMI CTAG 5 cut(s) 332, 812, 923, 996, 1074
StyD4I CCNGG 3 cut(s) 957, 1128, 1153
StyI CCWWGG 2 cut(s) 194, 432
TaaI ACNGT 4 cut(s) 179, 523, 616, 711
TaiI ACGT 3 cut(s) 498, 702, 1147
TaqI TCGA 3 cut(s) 148, 738, 973
TasI AATT 7 cut(s) 183, 252, 348, 685, 801, 852, 1015
TatI WGTACW 1 cut(s) 1060
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 3 cut(s) 575, 723, 1171
Tru9I TTAA 3 cut(s) 575, 723, 1171
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 642
TseI GCWGC 2 cut(s) 92, 217
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 5 cut(s) 60, 503, 570, 741, 831
TspGWI ACGGA 2 cut(s) 97, 193
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 1151
XapI RAATTY 1 cut(s) 685
XceI RCATGY 1 cut(s) 936
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 5 cut(s) 332, 812, 923, 996, 1074
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.