Porphobilinogen deaminase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08280 |
| fragaria_vesca | FvH4_4g37020 FvH4_7g04700 |
| malus_domestica | MD13G1004100.v1.1 MD16G1003400.v1.1 |
| prunus_persica | Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 |
| pyrus_communis | pycom13g00340 pycom16g00240 |
| rosa_chinensis | RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801 |
| rosa_laevigata | RLG00000005629 RLG00000029832 |
| rosa_multiflora | Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00320380 Rroxscaffold_5G00387180 |
| rosa_rugosa | Rorug01G0085800 Rorug01G0085900 Rorug04G0374900 |
| rosa_samantha | Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000 |
| rosa_wichuraiana | Rw0G015900 Rw4G037310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 476 |
| Acc36I | ACCTGC | 1 cut(s) | 1139 |
| AccB1I | GGYRCC | 1 cut(s) | 257 |
| AccBSI | CCGCTC | 1 cut(s) | 123 |
| AciI | CCGC | 2 cut(s) | 121, 414 |
| AclWI | GGATC | 3 cut(s) | 184, 197, 217 |
| AcsI | RAATTY | 1 cut(s) | 685 |
| AcuI | CTGAAG | 1 cut(s) | 357 |
| AcvI | CACGTG | 1 cut(s) | 1145 |
| AfaI | GTAC | 2 cut(s) | 622, 1062 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 544, 963, 986 |
| AgsI | TTSAA | 6 cut(s) | 81, 715, 801, 904, 1027, 1067 |
| AjiI | CACGTC | 1 cut(s) | 496 |
| AjnI | CCWGG | 3 cut(s) | 957, 1128, 1153 |
| AluBI | AGCT | 6 cut(s) | 331, 335, 605, 721, 761, 896 |
| AluI | AGCT | 6 cut(s) | 331, 335, 605, 721, 761, 896 |
| Alw26I | GTCTC | 3 cut(s) | 48, 115, 290 |
| AlwI | GGATC | 3 cut(s) | 184, 197, 217 |
| Ama87I | CYCGRG | 3 cut(s) | 261, 326, 512 |
| AoxI | GGCC | 4 cut(s) | 6, 198, 1081, 1126 |
| ApeKI | GCWGC | 2 cut(s) | 92, 217 |
| ApoI | RAATTY | 1 cut(s) | 685 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 822 |
| AspLEI | GCGC | 2 cut(s) | 64, 347 |
| AspS9I | GGNCC | 4 cut(s) | 7, 198, 1082, 1151 |
| AsuHPI | GGTGA | 3 cut(s) | 389, 421, 473 |
| AsuNHI | GCTAGC | 2 cut(s) | 331, 995 |
| AvaI | CYCGRG | 3 cut(s) | 261, 326, 512 |
| AvaII | GGWCC | 1 cut(s) | 1151 |
| BamHI | GGATCC | 1 cut(s) | 189 |
| BanI | GGYRCC | 1 cut(s) | 257 |
| BbrPI | CACGTG | 1 cut(s) | 1145 |
| BbvI | GCAGC | 2 cut(s) | 104, 229 |
| BccI | CCATC | 5 cut(s) | 173, 673, 956, 1004, 1043 |
| BciT130I | CCWGG | 3 cut(s) | 959, 1130, 1155 |
| BclI | TGATCA | 1 cut(s) | 1104 |
| BcoDI | GTCTC | 3 cut(s) | 48, 115, 290 |
| BfaI | CTAG | 5 cut(s) | 332, 812, 923, 996, 1074 |
| BfmI | CTRYAG | 1 cut(s) | 372 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BfuAI | ACCTGC | 1 cut(s) | 1139 |
| BglII | AGATCT | 1 cut(s) | 595 |
| BisI | GCNGC | 2 cut(s) | 93, 218 |
| BlsI | GCNGC | 2 cut(s) | 94, 219 |
| Bme1390I | CCNGG | 3 cut(s) | 959, 1130, 1155 |
| Bme18I | GGWCC | 1 cut(s) | 1151 |
| BmeT110I | CYCGRG | 3 cut(s) | 261, 326, 512 |
| BmgBI | CACGTC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 4 cut(s) | 7, 198, 1082, 1151 |
| BmiI | GGNNCC | 4 cut(s) | 106, 191, 259, 1054 |
| BmrFI | CCNGG | 3 cut(s) | 959, 1130, 1155 |
| BmsI | GCATC | 3 cut(s) | 326, 550, 1111 |
| BmtI | GCTAGC | 2 cut(s) | 335, 999 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 294, 326 |
| Bpu10I | CCTNAGC | 2 cut(s) | 285, 837 |
| BpuEI | CTTGAG | 2 cut(s) | 125, 1080 |
| BsaAI | YACGTR | 1 cut(s) | 1145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 5 cut(s) | 194, 262, 432, 542, 957 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 636, 666 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 544, 963, 986 |
| Bse3DI | GCAATG | 1 cut(s) | 471 |
| Bse8I | GATNNNNATC | 1 cut(s) | 359 |
| BseBI | CCWGG | 3 cut(s) | 959, 1130, 1155 |
| BseDI | CCNNGG | 5 cut(s) | 194, 262, 432, 542, 957 |
| BseGI | GGATG | 4 cut(s) | 556, 967, 1015, 1126 |
| BseJI | GATNNNNATC | 1 cut(s) | 359 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 544, 963, 986 |
| BseMI | GCAATG | 1 cut(s) | 471 |
| BseMII | CTCAG | 4 cut(s) | 126, 299, 380, 851 |
| BseRI | GAGGAG | 2 cut(s) | 28, 115 |
| BseXI | GCAGC | 2 cut(s) | 104, 229 |
| BsgI | GTGCAG | 2 cut(s) | 698, 1167 |
| BshFI | GGCC | 4 cut(s) | 8, 200, 1083, 1128 |
| BshNI | GGYRCC | 1 cut(s) | 257 |
| BsiHKCI | CYCGRG | 3 cut(s) | 261, 326, 512 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 544, 963, 986 |
| BsmAI | GTCTC | 3 cut(s) | 48, 115, 290 |
| BsmBI | CGTCTC | 2 cut(s) | 48, 115 |
| BsnI | GGCC | 4 cut(s) | 8, 200, 1083, 1128 |
| BsoBI | CYCGRG | 3 cut(s) | 261, 326, 512 |
| Bsp143I | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| BspACI | CCGC | 2 cut(s) | 121, 414 |
| BspANI | GGCC | 4 cut(s) | 8, 200, 1083, 1128 |
| BspCNI | CTCAG | 4 cut(s) | 125, 298, 381, 850 |
| BspHI | TCATGA | 1 cut(s) | 907 |
| BspLI | GGNNCC | 4 cut(s) | 106, 191, 259, 1054 |
| BspMI | ACCTGC | 1 cut(s) | 1139 |
| BspOI | GCTAGC | 2 cut(s) | 335, 999 |
| BspPI | GGATC | 3 cut(s) | 184, 197, 217 |
| BspQI | GCTCTTC | 1 cut(s) | 82 |
| BspT107I | GGYRCC | 1 cut(s) | 257 |
| BsrBI | CCGCTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 1 cut(s) | 471 |
| BssECI | CCNNGG | 5 cut(s) | 194, 262, 432, 542, 957 |
| BssMI | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| BssT1I | CCWWGG | 2 cut(s) | 194, 432 |
| Bst2UI | CCWGG | 3 cut(s) | 959, 1130, 1155 |
| Bst4CI | ACNGT | 4 cut(s) | 179, 523, 616, 711 |
| Bst6I | CTCTTC | 2 cut(s) | 82, 333 |
| BstBAI | YACGTR | 1 cut(s) | 1145 |
| BstC8I | GCNNGC | 7 cut(s) | 60, 333, 603, 859, 934, 997, 1126 |
| BstDEI | CTNAG | 5 cut(s) | 112, 285, 389, 632, 837 |
| BstDSI | CCRYGG | 1 cut(s) | 542 |
| BstF5I | GGATG | 4 cut(s) | 556, 967, 1015, 1126 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 64, 347 |
| BstKTI | GATC | 5 cut(s) | 152, 192, 225, 598, 1107 |
| BstMAI | GTCTC | 3 cut(s) | 48, 115, 290 |
| BstMBI | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 206, 328, 842, 992 |
| BstNI | CCWGG | 3 cut(s) | 959, 1130, 1155 |
| BstNSI | RCATGY | 1 cut(s) | 936 |
| BstSCI | CCNGG | 3 cut(s) | 957, 1128, 1153 |
| BstSFI | CTRYAG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 2 cut(s) | 104, 229 |
| BstX2I | RGATCY | 3 cut(s) | 189, 222, 595 |
| BstYI | RGATCY | 3 cut(s) | 189, 222, 595 |
| BsuRI | GGCC | 4 cut(s) | 8, 200, 1083, 1128 |
| BtgI | CCRYGG | 1 cut(s) | 542 |
| BtgZI | GCGATG | 1 cut(s) | 303 |
| BtrI | CACGTC | 1 cut(s) | 496 |
| BtsCI | GGATG | 4 cut(s) | 556, 967, 1015, 1126 |
| BtsIMutI | CAGTG | 1 cut(s) | 612 |
| BveI | ACCTGC | 1 cut(s) | 1139 |
| Cac8I | GCNNGC | 7 cut(s) | 60, 333, 603, 859, 934, 997, 1126 |
| CciI | TCATGA | 1 cut(s) | 907 |
| CfoI | GCGC | 2 cut(s) | 64, 347 |
| Cfr13I | GGNCC | 4 cut(s) | 7, 198, 1082, 1151 |
| Csp6I | GTAC | 2 cut(s) | 621, 1061 |
| CviAII | CATG | 6 cut(s) | 72, 130, 313, 908, 933, 1111 |
| CviQI | GTAC | 2 cut(s) | 621, 1061 |
| DdeI | CTNAG | 5 cut(s) | 112, 285, 389, 632, 837 |
| DpnI | GATC | 5 cut(s) | 151, 191, 224, 597, 1106 |
| DpnII | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 476 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 476 |
| Eam1104I | CTCTTC | 2 cut(s) | 82, 333 |
| EarI | CTCTTC | 2 cut(s) | 82, 333 |
| Eco130I | CCWWGG | 2 cut(s) | 194, 432 |
| Eco47I | GGWCC | 1 cut(s) | 1151 |
| Eco57I | CTGAAG | 1 cut(s) | 357 |
| Eco72I | CACGTG | 1 cut(s) | 1145 |
| Eco88I | CYCGRG | 3 cut(s) | 261, 326, 512 |
| EcoO109I | RGGNCCY | 2 cut(s) | 7, 198 |
| EcoRII | CCWGG | 3 cut(s) | 957, 1128, 1153 |
| EcoT14I | CCWWGG | 2 cut(s) | 194, 432 |
| EcoT22I | ATGCAT | 1 cut(s) | 565 |
| ErhI | CCWWGG | 2 cut(s) | 194, 432 |
| Esp3I | CGTCTC | 2 cut(s) | 48, 115 |
| FaeI | CATG | 6 cut(s) | 75, 133, 316, 911, 936, 1114 |
| FatI | CATG | 6 cut(s) | 71, 129, 312, 907, 932, 1110 |
| FauI | CCCGC | 1 cut(s) | 407 |
| FbaI | TGATCA | 1 cut(s) | 1104 |
| Fnu4HI | GCNGC | 2 cut(s) | 93, 218 |
| FokI | GGATG | 4 cut(s) | 563, 974, 1022, 1133 |
| Fsp4HI | GCNGC | 2 cut(s) | 93, 218 |
| FspBI | CTAG | 5 cut(s) | 332, 812, 923, 996, 1074 |
| GlaI | GCGC | 2 cut(s) | 63, 346 |
| GluI | GCNGC | 2 cut(s) | 93, 218 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 4 cut(s) | 8, 200, 1083, 1128 |
| HhaI | GCGC | 2 cut(s) | 64, 347 |
| Hin1II | CATG | 6 cut(s) | 75, 133, 316, 911, 936, 1114 |
| Hin6I | GCGC | 2 cut(s) | 62, 345 |
| HinP1I | GCGC | 2 cut(s) | 62, 345 |
| HindIII | AAGCTT | 1 cut(s) | 719 |
| HinfI | GANTC | 4 cut(s) | 145, 391, 765, 904 |
| HphI | GGTGA | 3 cut(s) | 389, 421, 473 |
| Hpy166II | GTNNAC | 3 cut(s) | 429, 481, 1061 |
| Hpy188I | TCNGA | 5 cut(s) | 170, 251, 354, 557, 954 |
| Hpy188III | TCNNGA | 5 cut(s) | 142, 226, 703, 908, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 429, 481, 1061 |
| Hpy99I | CGWCG | 1 cut(s) | 209 |
| HpyAV | CCTTC | 4 cut(s) | 78, 412, 548, 959 |
| HpyCH4III | ACNGT | 4 cut(s) | 179, 523, 616, 711 |
| HpyCH4IV | ACGT | 3 cut(s) | 495, 699, 1144 |
| HpyCH4V | TGCA | 9 cut(s) | 404, 534, 563, 593, 679, 932, 1020, 1124, 1148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 206, 328, 842, 992 |
| HpyF3I | CTNAG | 5 cut(s) | 112, 285, 389, 632, 837 |
| HpySE526I | ACGT | 3 cut(s) | 495, 699, 1144 |
| Hsp92II | CATG | 6 cut(s) | 75, 133, 316, 911, 936, 1114 |
| HspAI | GCGC | 2 cut(s) | 62, 345 |
| Ksp22I | TGATCA | 1 cut(s) | 1104 |
| Kzo9I | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| LguI | GCTCTTC | 1 cut(s) | 82 |
| LmnI | GCTCC | 3 cut(s) | 41, 110, 128 |
| Lsp1109I | GCAGC | 2 cut(s) | 104, 229 |
| LweI | GCATC | 3 cut(s) | 326, 550, 1111 |
| MaeI | CTAG | 5 cut(s) | 332, 812, 923, 996, 1074 |
| MaeII | ACGT | 3 cut(s) | 495, 699, 1144 |
| MaeIII | GTNAC | 3 cut(s) | 642, 695, 793 |
| MalI | GATC | 5 cut(s) | 151, 191, 224, 597, 1106 |
| MbiI | CCGCTC | 1 cut(s) | 123 |
| MboI | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| MboII | GAAGA | 9 cut(s) | 9, 12, 15, 18, 21, 69, 350, 576, 648 |
| MflI | RGATCY | 3 cut(s) | 189, 222, 595 |
| MluCI | AATT | 7 cut(s) | 183, 252, 348, 685, 801, 852, 1015 |
| MlyI | GAGTC | 3 cut(s) | 139, 400, 759 |
| Mph1103I | ATGCAT | 1 cut(s) | 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 822 |
| MseI | TTAA | 3 cut(s) | 575, 723, 1171 |
| MspA1I | CMGCKG | 1 cut(s) | 605 |
| MspR9I | CCNGG | 3 cut(s) | 959, 1130, 1155 |
| MvaI | CCWGG | 3 cut(s) | 959, 1130, 1155 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 206, 328, 842, 992 |
| NdeII | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| NheI | GCTAGC | 2 cut(s) | 331, 995 |
| NlaIII | CATG | 6 cut(s) | 75, 133, 316, 911, 936, 1114 |
| NlaIV | GGNNCC | 4 cut(s) | 106, 191, 259, 1054 |
| NmuCI | GTSAC | 1 cut(s) | 642 |
| NsiI | ATGCAT | 1 cut(s) | 565 |
| NspI | RCATGY | 1 cut(s) | 936 |
| PaeI | GCATGC | 1 cut(s) | 936 |
| PagI | TCATGA | 1 cut(s) | 907 |
| PciSI | GCTCTTC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 822 |
| PfeI | GAWTC | 1 cut(s) | 904 |
| PkrI | GCNGC | 2 cut(s) | 94, 219 |
| PleI | GAGTC | 3 cut(s) | 139, 399, 759 |
| PmaCI | CACGTG | 1 cut(s) | 1145 |
| PmlI | CACGTG | 1 cut(s) | 1145 |
| PpsI | GAGTC | 3 cut(s) | 139, 399, 759 |
| Ppu21I | YACGTR | 1 cut(s) | 1145 |
| Psp6I | CCWGG | 3 cut(s) | 957, 1128, 1153 |
| PspCI | CACGTG | 1 cut(s) | 1145 |
| PspGI | CCWGG | 3 cut(s) | 957, 1128, 1153 |
| PspN4I | GGNNCC | 4 cut(s) | 106, 191, 259, 1054 |
| PspPI | GGNCC | 4 cut(s) | 7, 198, 1082, 1151 |
| PsuI | RGATCY | 3 cut(s) | 189, 222, 595 |
| PvuII | CAGCTG | 1 cut(s) | 605 |
| RsaI | GTAC | 2 cut(s) | 622, 1062 |
| RsaNI | GTAC | 2 cut(s) | 621, 1061 |
| SapI | GCTCTTC | 1 cut(s) | 82 |
| SaqAI | TTAA | 3 cut(s) | 575, 723, 1171 |
| SatI | GCNGC | 2 cut(s) | 93, 218 |
| Sau3AI | GATC | 5 cut(s) | 149, 189, 222, 595, 1104 |
| Sau96I | GGNCC | 4 cut(s) | 7, 198, 1082, 1151 |
| SchI | GAGTC | 3 cut(s) | 139, 400, 759 |
| ScrFI | CCNGG | 3 cut(s) | 959, 1130, 1155 |
| SfaNI | GCATC | 3 cut(s) | 326, 550, 1111 |
| SfcI | CTRYAG | 1 cut(s) | 372 |
| SinI | GGWCC | 1 cut(s) | 1151 |
| SmlI | CTYRAG | 2 cut(s) | 140, 1095 |
| SmoI | CTYRAG | 2 cut(s) | 140, 1095 |
| SphI | GCATGC | 1 cut(s) | 936 |
| Sse9I | AATT | 7 cut(s) | 183, 252, 348, 685, 801, 852, 1015 |
| SsiI | CCGC | 2 cut(s) | 121, 414 |
| SspMI | CTAG | 5 cut(s) | 332, 812, 923, 996, 1074 |
| StyD4I | CCNGG | 3 cut(s) | 957, 1128, 1153 |
| StyI | CCWWGG | 2 cut(s) | 194, 432 |
| TaaI | ACNGT | 4 cut(s) | 179, 523, 616, 711 |
| TaiI | ACGT | 3 cut(s) | 498, 702, 1147 |
| TaqI | TCGA | 3 cut(s) | 148, 738, 973 |
| TasI | AATT | 7 cut(s) | 183, 252, 348, 685, 801, 852, 1015 |
| TatI | WGTACW | 1 cut(s) | 1060 |
| TfiI | GAWTC | 1 cut(s) | 904 |
| Tru1I | TTAA | 3 cut(s) | 575, 723, 1171 |
| Tru9I | TTAA | 3 cut(s) | 575, 723, 1171 |
| TscAI | CASTG | 1 cut(s) | 619 |
| TseFI | GTSAC | 1 cut(s) | 642 |
| TseI | GCWGC | 2 cut(s) | 92, 217 |
| Tsp45I | GTSAC | 1 cut(s) | 642 |
| TspDTI | ATGAA | 5 cut(s) | 60, 503, 570, 741, 831 |
| TspGWI | ACGGA | 2 cut(s) | 97, 193 |
| TspRI | CASTG | 1 cut(s) | 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 1151 |
| XapI | RAATTY | 1 cut(s) | 685 |
| XceI | RCATGY | 1 cut(s) | 936 |
| XmnI | GAANNNNTTC | 1 cut(s) | 822 |
| XspI | CTAG | 5 cut(s) | 332, 812, 923, 996, 1074 |
| Zsp2I | ATGCAT | 1 cut(s) | 565 |