Porphobilinogen deaminase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08280 |
| fragaria_vesca | FvH4_4g37020 FvH4_7g04700 |
| malus_domestica | MD13G1004100.v1.1 MD16G1003400.v1.1 |
| prunus_persica | Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 Prupe.1G348400_v2.0.a1 |
| pyrus_communis | pycom13g00340 pycom16g00240 |
| rosa_chinensis | RchiOBHm_Chr1g0330101 RchiOBHm_Chr4g0446801 |
| rosa_laevigata | RLG00000005629 RLG00000029832 |
| rosa_multiflora | Rmu_co8512413.1_g000001 Rmu_sc0001753.1_g000022 Rmu_sc0004673.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00320380 Rroxscaffold_5G00387180 |
| rosa_rugosa | Rorug01G0085800 Rorug01G0085900 Rorug04G0374900 |
| rosa_samantha | Rh1AG104400 Rh1CG100000 Rh1DG107300 Rh1DG108400 Rh4AG436200 Rh4BG445300 Rh4CG462600 Rh4DG444000 |
| rosa_wichuraiana | Rw0G015900 Rw4G037310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 338 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 449 |
| Acc36I | ACCTGC | 1 cut(s) | 1112 |
| AccB1I | GGYRCC | 1 cut(s) | 230 |
| AccII | CGCG | 1 cut(s) | 517 |
| AciI | CCGC | 3 cut(s) | 377, 515, 734 |
| AclWI | GGATC | 2 cut(s) | 157, 170 |
| AcsI | RAATTY | 1 cut(s) | 658 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcvI | CACGTG | 1 cut(s) | 1031 |
| AfaI | GTAC | 2 cut(s) | 595, 1035 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 936, 959 |
| AflIII | ACRYGT | 2 cut(s) | 1028, 1030 |
| AgsI | TTSAA | 5 cut(s) | 57, 774, 877, 1000, 1070 |
| AjnI | CCWGG | 4 cut(s) | 91, 930, 1101, 1126 |
| AluBI | AGCT | 4 cut(s) | 74, 125, 308, 578 |
| AluI | AGCT | 4 cut(s) | 74, 125, 308, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 587 |
| Alw26I | GTCTC | 2 cut(s) | 88, 263 |
| AlwI | GGATC | 2 cut(s) | 157, 170 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 74, 92, 1127 |
| Ama87I | CYCGRG | 2 cut(s) | 120, 234 |
| AoxI | GGCC | 4 cut(s) | 171, 204, 726, 1099 |
| ApeKI | GCWGC | 1 cut(s) | 190 |
| ApoI | RAATTY | 1 cut(s) | 658 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 795 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AspS9I | GGNCC | 2 cut(s) | 171, 1124 |
| AsuHPI | GGTGA | 3 cut(s) | 362, 394, 446 |
| AsuNHI | GCTAGC | 2 cut(s) | 895, 968 |
| AvaI | CYCGRG | 2 cut(s) | 120, 234 |
| AvaII | GGWCC | 1 cut(s) | 1124 |
| BamHI | GGATCC | 1 cut(s) | 162 |
| BanI | GGYRCC | 1 cut(s) | 230 |
| BanII | GRGCYC | 1 cut(s) | 245 |
| BauI | CACGAG | 1 cut(s) | 881 |
| BbrPI | CACGTG | 1 cut(s) | 1031 |
| BbsI | GAAGAC | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 587 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BccI | CCATC | 5 cut(s) | 115, 646, 929, 977, 1016 |
| BceAI | ACGGC | 1 cut(s) | 698 |
| BciT130I | CCWGG | 4 cut(s) | 93, 932, 1103, 1128 |
| BclI | TGATCA | 1 cut(s) | 1077 |
| BcoDI | GTCTC | 2 cut(s) | 88, 263 |
| BfaI | CTAG | 6 cut(s) | 248, 305, 653, 785, 896, 969 |
| BfmI | CTRYAG | 1 cut(s) | 345 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BfuAI | ACCTGC | 1 cut(s) | 1112 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 212 |
| BglII | AGATCT | 1 cut(s) | 568 |
| BisI | GCNGC | 1 cut(s) | 191 |
| BlsI | GCNGC | 1 cut(s) | 192 |
| Bme1390I | CCNGG | 4 cut(s) | 93, 932, 1103, 1128 |
| Bme18I | GGWCC | 1 cut(s) | 1124 |
| BmeT110I | CYCGRG | 2 cut(s) | 120, 234 |
| BmgT120I | GGNCC | 2 cut(s) | 171, 1124 |
| BmiI | GGNNCC | 3 cut(s) | 164, 232, 242 |
| BmrFI | CCNGG | 4 cut(s) | 93, 932, 1103, 1128 |
| BmsI | GCATC | 4 cut(s) | 299, 304, 523, 563 |
| BmtI | GCTAGC | 2 cut(s) | 899, 972 |
| BpiI | GAAGAC | 1 cut(s) | 497 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 267, 299 |
| Bpu10I | CCTNAGC | 2 cut(s) | 258, 730 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaAI | YACGTR | 1 cut(s) | 1031 |
| BsaBI | GATNNNNATC | 1 cut(s) | 637 |
| BsaJI | CCNNGG | 6 cut(s) | 91, 167, 235, 405, 930, 1127 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 936, 959 |
| Bse1I | ACTGG | 2 cut(s) | 216, 1041 |
| Bse3DI | GCAATG | 2 cut(s) | 444, 847 |
| Bse8I | GATNNNNATC | 1 cut(s) | 637 |
| BseBI | CCWGG | 4 cut(s) | 93, 932, 1103, 1128 |
| BseDI | CCNNGG | 6 cut(s) | 91, 167, 235, 405, 930, 1127 |
| BseGI | GGATG | 5 cut(s) | 107, 295, 529, 940, 988 |
| BseJI | GATNNNNATC | 1 cut(s) | 637 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 936, 959 |
| BseMI | GCAATG | 2 cut(s) | 444, 847 |
| BseMII | CTCAG | 6 cut(s) | 93, 99, 272, 353, 477, 677 |
| BseNI | ACTGG | 2 cut(s) | 216, 1041 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BseYI | CCCAGC | 1 cut(s) | 578 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| Bsh1236I | CGCG | 1 cut(s) | 517 |
| BshFI | GGCC | 4 cut(s) | 173, 206, 728, 1101 |
| BshNI | GGYRCC | 1 cut(s) | 230 |
| BsiHKAI | GWGCWC | 1 cut(s) | 587 |
| BsiHKCI | CYCGRG | 2 cut(s) | 120, 234 |
| BslFI | GGGAC | 3 cut(s) | 74, 455, 750 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 936, 959 |
| BsmAI | GTCTC | 2 cut(s) | 88, 263 |
| BsmFI | GGGAC | 3 cut(s) | 74, 455, 750 |
| BsnI | GGCC | 4 cut(s) | 173, 206, 728, 1101 |
| BsoBI | CYCGRG | 2 cut(s) | 120, 234 |
| Bsp1286I | GDGCHC | 2 cut(s) | 245, 587 |
| Bsp143I | GATC | 3 cut(s) | 162, 568, 1077 |
| BspACI | CCGC | 3 cut(s) | 377, 515, 734 |
| BspANI | GGCC | 4 cut(s) | 173, 206, 728, 1101 |
| BspCNI | CTCAG | 6 cut(s) | 92, 98, 271, 354, 478, 678 |
| BspFNI | CGCG | 1 cut(s) | 517 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 3 cut(s) | 164, 232, 242 |
| BspMI | ACCTGC | 1 cut(s) | 1112 |
| BspOI | GCTAGC | 2 cut(s) | 899, 972 |
| BspPI | GGATC | 2 cut(s) | 157, 170 |
| BspQI | GCTCTTC | 1 cut(s) | 48 |
| BspT107I | GGYRCC | 1 cut(s) | 230 |
| BsrDI | GCAATG | 2 cut(s) | 444, 847 |
| BsrI | ACTGG | 2 cut(s) | 216, 1041 |
| BssECI | CCNNGG | 6 cut(s) | 91, 167, 235, 405, 930, 1127 |
| BssMI | GATC | 3 cut(s) | 162, 568, 1077 |
| BssSI | CACGAG | 1 cut(s) | 881 |
| BssT1I | CCWWGG | 2 cut(s) | 167, 405 |
| Bst2BI | CACGAG | 1 cut(s) | 881 |
| Bst2UI | CCWGG | 4 cut(s) | 93, 932, 1103, 1128 |
| Bst4CI | ACNGT | 2 cut(s) | 137, 152 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 306 |
| BstBAI | YACGTR | 1 cut(s) | 1031 |
| BstC8I | GCNNGC | 6 cut(s) | 76, 576, 832, 897, 970, 1099 |
| BstDEI | CTNAG | 9 cut(s) | 79, 85, 258, 362, 486, 605, 686, 730, 748 |
| BstF5I | GGATG | 5 cut(s) | 107, 295, 529, 940, 988 |
| BstFNI | CGCG | 1 cut(s) | 517 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 3 cut(s) | 165, 571, 1080 |
| BstMAI | GTCTC | 2 cut(s) | 88, 263 |
| BstMBI | GATC | 3 cut(s) | 162, 568, 1077 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 179, 212, 649, 815, 965 |
| BstNI | CCWGG | 4 cut(s) | 93, 932, 1103, 1128 |
| BstNSI | RCATGY | 1 cut(s) | 909 |
| BstSCI | CCNGG | 4 cut(s) | 91, 930, 1101, 1126 |
| BstSFI | CTRYAG | 1 cut(s) | 345 |
| BstUI | CGCG | 1 cut(s) | 517 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 1 cut(s) | 497 |
| BstX2I | RGATCY | 2 cut(s) | 162, 568 |
| BstYI | RGATCY | 2 cut(s) | 162, 568 |
| BsuRI | GGCC | 4 cut(s) | 173, 206, 728, 1101 |
| BtgZI | GCGATG | 2 cut(s) | 276, 624 |
| BtsCI | GGATG | 5 cut(s) | 107, 295, 529, 940, 988 |
| BtsIMutI | CAGTG | 2 cut(s) | 133, 157 |
| BveI | ACCTGC | 1 cut(s) | 1112 |
| Cac8I | GCNNGC | 6 cut(s) | 76, 576, 832, 897, 970, 1099 |
| CaiI | CAGNNNCTG | 3 cut(s) | 74, 92, 1127 |
| CciI | TCATGA | 1 cut(s) | 265 |
| CfoI | GCGC | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 2 cut(s) | 171, 1124 |
| Csp6I | GTAC | 2 cut(s) | 594, 1034 |
| CviAII | CATG | 5 cut(s) | 266, 286, 504, 906, 1084 |
| CviQI | GTAC | 2 cut(s) | 594, 1034 |
| DdeI | CTNAG | 9 cut(s) | 79, 85, 258, 362, 486, 605, 686, 730, 748 |
| DpnI | GATC | 3 cut(s) | 164, 570, 1079 |
| DpnII | GATC | 3 cut(s) | 162, 568, 1077 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 449 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 449 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 306 |
| EarI | CTCTTC | 2 cut(s) | 48, 306 |
| Eco130I | CCWWGG | 2 cut(s) | 167, 405 |
| Eco24I | GRGCYC | 1 cut(s) | 245 |
| Eco32I | GATATC | 1 cut(s) | 635 |
| Eco47I | GGWCC | 1 cut(s) | 1124 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco72I | CACGTG | 1 cut(s) | 1031 |
| Eco88I | CYCGRG | 2 cut(s) | 120, 234 |
| EcoO109I | RGGNCCY | 2 cut(s) | 171, 1124 |
| EcoRII | CCWGG | 4 cut(s) | 91, 930, 1101, 1126 |
| EcoRV | GATATC | 1 cut(s) | 635 |
| EcoT14I | CCWWGG | 2 cut(s) | 167, 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 538 |
| EcoT38I | GRGCYC | 1 cut(s) | 245 |
| ErhI | CCWWGG | 2 cut(s) | 167, 405 |
| FaeI | CATG | 5 cut(s) | 269, 289, 507, 909, 1087 |
| FaqI | GGGAC | 3 cut(s) | 74, 455, 750 |
| FatI | CATG | 5 cut(s) | 265, 285, 503, 905, 1083 |
| FauI | CCCGC | 1 cut(s) | 727 |
| FauNDI | CATATG | 1 cut(s) | 1060 |
| FbaI | TGATCA | 1 cut(s) | 1077 |
| Fnu4HI | GCNGC | 1 cut(s) | 191 |
| FokI | GGATG | 5 cut(s) | 94, 282, 536, 947, 995 |
| FriOI | GRGCYC | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 191 |
| FspBI | CTAG | 6 cut(s) | 248, 305, 653, 785, 896, 969 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 1 cut(s) | 191 |
| GsaI | CCCAGC | 1 cut(s) | 582 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 4 cut(s) | 173, 206, 728, 1101 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1II | CATG | 5 cut(s) | 269, 289, 507, 909, 1087 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HinfI | GANTC | 3 cut(s) | 118, 738, 877 |
| HphI | GGTGA | 3 cut(s) | 362, 394, 446 |
| Hpy166II | GTNNAC | 3 cut(s) | 402, 454, 1034 |
| Hpy188I | TCNGA | 5 cut(s) | 143, 224, 327, 530, 927 |
| Hpy188III | TCNNGA | 6 cut(s) | 115, 266, 299, 676, 881, 1070 |
| Hpy8I | GTNNAC | 3 cut(s) | 402, 454, 1034 |
| HpyAV | CCTTC | 3 cut(s) | 196, 385, 521 |
| HpyCH4III | ACNGT | 2 cut(s) | 137, 152 |
| HpyCH4IV | ACGT | 1 cut(s) | 1030 |
| HpyCH4V | TGCA | 7 cut(s) | 155, 507, 536, 554, 809, 905, 993 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 179, 212, 649, 815, 965 |
| HpyF3I | CTNAG | 9 cut(s) | 79, 85, 258, 362, 486, 605, 686, 730, 748 |
| HpySE526I | ACGT | 1 cut(s) | 1030 |
| Hsp92II | CATG | 5 cut(s) | 269, 289, 507, 909, 1087 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Ksp22I | TGATCA | 1 cut(s) | 1077 |
| Kzo9I | GATC | 3 cut(s) | 162, 568, 1077 |
| LguI | GCTCTTC | 1 cut(s) | 48 |
| LmnI | GCTCC | 3 cut(s) | 71, 240, 582 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| LweI | GCATC | 4 cut(s) | 299, 304, 523, 563 |
| MaeI | CTAG | 6 cut(s) | 248, 305, 653, 785, 896, 969 |
| MaeII | ACGT | 1 cut(s) | 1030 |
| MaeIII | GTNAC | 2 cut(s) | 615, 766 |
| MalI | GATC | 3 cut(s) | 164, 570, 1079 |
| MboI | GATC | 3 cut(s) | 162, 568, 1077 |
| MfeI | CAATTG | 1 cut(s) | 819 |
| MflI | RGATCY | 2 cut(s) | 162, 568 |
| MhlI | GDGCHC | 2 cut(s) | 245, 587 |
| MlyI | GAGTC | 2 cut(s) | 112, 732 |
| Mph1103I | ATGCAT | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 795 |
| MseI | TTAA | 2 cut(s) | 548, 1144 |
| MspA1I | CMGCKG | 1 cut(s) | 578 |
| MspR9I | CCNGG | 4 cut(s) | 93, 932, 1103, 1128 |
| MunI | CAATTG | 1 cut(s) | 819 |
| MvaI | CCWGG | 4 cut(s) | 93, 932, 1103, 1128 |
| MvnI | CGCG | 1 cut(s) | 517 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 179, 212, 649, 815, 965 |
| NdeI | CATATG | 1 cut(s) | 1060 |
| NdeII | GATC | 3 cut(s) | 162, 568, 1077 |
| NheI | GCTAGC | 2 cut(s) | 895, 968 |
| NlaIII | CATG | 5 cut(s) | 269, 289, 507, 909, 1087 |
| NlaIV | GGNNCC | 3 cut(s) | 164, 232, 242 |
| NmuCI | GTSAC | 2 cut(s) | 615, 766 |
| NsiI | ATGCAT | 1 cut(s) | 538 |
| NspI | RCATGY | 1 cut(s) | 909 |
| PaeR7I | CTCGAG | 1 cut(s) | 120 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PciSI | GCTCTTC | 1 cut(s) | 48 |
| PdmI | GAANNNNTTC | 1 cut(s) | 795 |
| PfeI | GAWTC | 1 cut(s) | 877 |
| PkrI | GCNGC | 1 cut(s) | 192 |
| PleI | GAGTC | 2 cut(s) | 112, 732 |
| PmaCI | CACGTG | 1 cut(s) | 1031 |
| PmlI | CACGTG | 1 cut(s) | 1031 |
| PpsI | GAGTC | 2 cut(s) | 112, 732 |
| Ppu21I | YACGTR | 1 cut(s) | 1031 |
| PpuMI | RGGWCCY | 1 cut(s) | 1124 |
| PsiI | TTATAA | 1 cut(s) | 338 |
| Psp5II | RGGWCCY | 1 cut(s) | 1124 |
| Psp6I | CCWGG | 4 cut(s) | 91, 930, 1101, 1126 |
| PspCI | CACGTG | 1 cut(s) | 1031 |
| PspFI | CCCAGC | 1 cut(s) | 578 |
| PspGI | CCWGG | 4 cut(s) | 91, 930, 1101, 1126 |
| PspN4I | GGNNCC | 3 cut(s) | 164, 232, 242 |
| PspPI | GGNCC | 2 cut(s) | 171, 1124 |
| PspPPI | RGGWCCY | 1 cut(s) | 1124 |
| PspXI | VCTCGAGB | 1 cut(s) | 120 |
| PstNI | CAGNNNCTG | 3 cut(s) | 74, 92, 1127 |
| PsuI | RGATCY | 2 cut(s) | 162, 568 |
| PvuII | CAGCTG | 1 cut(s) | 578 |
| RsaI | GTAC | 2 cut(s) | 595, 1035 |
| RsaNI | GTAC | 2 cut(s) | 594, 1034 |
| SapI | GCTCTTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 2 cut(s) | 548, 1144 |
| SatI | GCNGC | 1 cut(s) | 191 |
| Sau3AI | GATC | 3 cut(s) | 162, 568, 1077 |
| Sau96I | GGNCC | 2 cut(s) | 171, 1124 |
| SchI | GAGTC | 2 cut(s) | 112, 732 |
| ScrFI | CCNGG | 4 cut(s) | 93, 932, 1103, 1128 |
| SduI | GDGCHC | 2 cut(s) | 245, 587 |
| SfaNI | GCATC | 4 cut(s) | 299, 304, 523, 563 |
| SfcI | CTRYAG | 1 cut(s) | 345 |
| Sfr274I | CTCGAG | 1 cut(s) | 120 |
| SinI | GGWCC | 1 cut(s) | 1124 |
| SlaI | CTCGAG | 1 cut(s) | 120 |
| SmlI | CTYRAG | 2 cut(s) | 113, 120 |
| SmoI | CTYRAG | 2 cut(s) | 113, 120 |
| SsiI | CCGC | 3 cut(s) | 377, 515, 734 |
| SspMI | CTAG | 6 cut(s) | 248, 305, 653, 785, 896, 969 |
| StyD4I | CCNGG | 4 cut(s) | 91, 930, 1101, 1126 |
| StyI | CCWWGG | 2 cut(s) | 167, 405 |
| TaaI | ACNGT | 2 cut(s) | 137, 152 |
| TaiI | ACGT | 1 cut(s) | 1033 |
| TaqI | TCGA | 2 cut(s) | 121, 1046 |
| TatI | WGTACW | 1 cut(s) | 1033 |
| TfiI | GAWTC | 1 cut(s) | 877 |
| Tru1I | TTAA | 2 cut(s) | 548, 1144 |
| Tru9I | TTAA | 2 cut(s) | 548, 1144 |
| TscAI | CASTG | 2 cut(s) | 140, 157 |
| TseFI | GTSAC | 2 cut(s) | 615, 766 |
| TseI | GCWGC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 2 cut(s) | 615, 766 |
| TspDTI | ATGAA | 3 cut(s) | 476, 714, 804 |
| TspGWI | ACGGA | 1 cut(s) | 773 |
| TspRI | CASTG | 2 cut(s) | 140, 157 |
| VpaK11BI | GGWCC | 1 cut(s) | 1124 |
| XapI | RAATTY | 1 cut(s) | 658 |
| XceI | RCATGY | 1 cut(s) | 909 |
| XhoI | CTCGAG | 1 cut(s) | 120 |
| XmnI | GAANNNNTTC | 1 cut(s) | 795 |
| XspI | CTAG | 6 cut(s) | 248, 305, 653, 785, 896, 969 |
| Zsp2I | ATGCAT | 1 cut(s) | 538 |