Prupe.1G348400_v2.0.a1

Porphobilinogen deaminase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32538470 .. 32541330
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G348400.2

Sequence Viewer

Length: 1146 bp
ATGGAGACCCTTTGTTCTTCTTCTCTTTTGACTAAACAGGCTCTTCCTTTATCTTCAATCAACTTCGCAGGAGCTGGCTCAGTCTCAGTCCCTGGCTTCTCTTTGCCATCCCTCAAGACTCGAGCTTTTCCCCACTGTATCAGAAAACACAGTGCAGTTGGGATCCCAAGGGCCTCTGTCGCTGTTGAGCAGCAGACCCAGAAGGCCAAACTGGCGCTAATCAGAATTGGCACCCGAGGGAGCCCACTAGCACTTGCTCAGGCTCATGAGACAAGAGATAAACTCATGGCATCGCATCCAGACCTAGCTGAAGAGGGGGCAATTCAGATTGTAATTATAAAAACTACAGGTGATAAAATACTGAGCCAACCCCTTGCGGACATTGGTGGGAAGGGCTTGTTCACCAAGGAAATAGACGAGGCACTAATCAATGGTGAAATTGACATTGCTGTCCACTCAATGAAAGATGTCCCTACCTACTTACCTGAGAAGACAATTCTTCCATGCAACCTTCCGCGAGAGGATGTCCGAGATGCATTTATATCCTTAACTGCATCTTCTTTGGCAGATCTGCCAGCTGGGAGCACTATTGGTACTGCCTCCCTTAGAAGAAAGTCACAGATACTCAATAGATATCCATCGCTCAATGTGCTAGAGAATTTTCGTGGTAATGTCCAGACACGGCTGAGAAAACTCAATGAAAAGGTAGTCCAAGCAACCTTATTGGCCTTAGCGGGACTCAAACGCTTAGATATGACGGAAAATGTGACTTCAATTCTTTCACTAGATGAAATGCTTCCAGCAGTTGCACAAGGGGCAATTGGAATTGCCTGCCGAAGCAATGATGATAAAATGGCTAATTACATAGCCTCATTGAATCACGAGGAAACAAGGCTAGCAGTTGCATGTGAGAGGGCGTTTCTTCTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCTAGCAGAGATGAGGATGGTAATTGCATATTCAAAGGGTTGGTGGCTTCCCCTGATGGAACACGTGTACTGGAAACTTCGAGGAAAGGCACATATGCTTTTCAAGATATGATCAACATGGGTAAGGAAGCAGGCCAGGAACTTCTTTCACAAGCAGGTCCTGGGTTTTTTGATAGTTAA

Protein Analysis

382

Amino Acids

40.86

Weight (kDa)

7.6

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AasI GACNNNNNNGTC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 1112
AccB1I GGYRCC 1 cut(s) 230
AccII CGCG 1 cut(s) 517
AciI CCGC 3 cut(s) 377, 515, 734
AclWI GGATC 2 cut(s) 157, 170
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 330
AcvI CACGTG 1 cut(s) 1031
AfaI GTAC 2 cut(s) 595, 1035
AfiI CCNNNNNNNGG 2 cut(s) 936, 959
AflIII ACRYGT 2 cut(s) 1028, 1030
AgsI TTSAA 5 cut(s) 57, 774, 877, 1000, 1070
AjnI CCWGG 4 cut(s) 91, 930, 1101, 1126
AluBI AGCT 4 cut(s) 74, 125, 308, 578
AluI AGCT 4 cut(s) 74, 125, 308, 578
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 2 cut(s) 88, 263
AlwI GGATC 2 cut(s) 157, 170
AlwNI CAGNNNCTG 3 cut(s) 74, 92, 1127
Ama87I CYCGRG 2 cut(s) 120, 234
AoxI GGCC 4 cut(s) 171, 204, 726, 1099
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 658
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 171, 1124
AsuHPI GGTGA 3 cut(s) 362, 394, 446
AsuNHI GCTAGC 2 cut(s) 895, 968
AvaI CYCGRG 2 cut(s) 120, 234
AvaII GGWCC 1 cut(s) 1124
BamHI GGATCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 245
BauI CACGAG 1 cut(s) 881
BbrPI CACGTG 1 cut(s) 1031
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 1 cut(s) 202
BccI CCATC 5 cut(s) 115, 646, 929, 977, 1016
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 4 cut(s) 93, 932, 1103, 1128
BclI TGATCA 1 cut(s) 1077
BcoDI GTCTC 2 cut(s) 88, 263
BfaI CTAG 6 cut(s) 248, 305, 653, 785, 896, 969
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 568
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 4 cut(s) 93, 932, 1103, 1128
Bme18I GGWCC 1 cut(s) 1124
BmeT110I CYCGRG 2 cut(s) 120, 234
BmgT120I GGNCC 2 cut(s) 171, 1124
BmiI GGNNCC 3 cut(s) 164, 232, 242
BmrFI CCNGG 4 cut(s) 93, 932, 1103, 1128
BmsI GCATC 4 cut(s) 299, 304, 523, 563
BmtI GCTAGC 2 cut(s) 899, 972
BpiI GAAGAC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 267, 299
Bpu10I CCTNAGC 2 cut(s) 258, 730
BpuEI CTTGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 637
BsaJI CCNNGG 6 cut(s) 91, 167, 235, 405, 930, 1127
Bsc4I CCNNNNNNNGG 2 cut(s) 936, 959
Bse1I ACTGG 2 cut(s) 216, 1041
Bse3DI GCAATG 2 cut(s) 444, 847
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 4 cut(s) 93, 932, 1103, 1128
BseDI CCNNGG 6 cut(s) 91, 167, 235, 405, 930, 1127
BseGI GGATG 5 cut(s) 107, 295, 529, 940, 988
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 936, 959
BseMI GCAATG 2 cut(s) 444, 847
BseMII CTCAG 6 cut(s) 93, 99, 272, 353, 477, 677
BseNI ACTGG 2 cut(s) 216, 1041
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 4 cut(s) 173, 206, 728, 1101
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 2 cut(s) 120, 234
BslFI GGGAC 3 cut(s) 74, 455, 750
BslI CCNNNNNNNGG 2 cut(s) 936, 959
BsmAI GTCTC 2 cut(s) 88, 263
BsmFI GGGAC 3 cut(s) 74, 455, 750
BsnI GGCC 4 cut(s) 173, 206, 728, 1101
BsoBI CYCGRG 2 cut(s) 120, 234
Bsp1286I GDGCHC 2 cut(s) 245, 587
Bsp143I GATC 3 cut(s) 162, 568, 1077
BspACI CCGC 3 cut(s) 377, 515, 734
BspANI GGCC 4 cut(s) 173, 206, 728, 1101
BspCNI CTCAG 6 cut(s) 92, 98, 271, 354, 478, 678
BspFNI CGCG 1 cut(s) 517
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 3 cut(s) 164, 232, 242
BspMI ACCTGC 1 cut(s) 1112
BspOI GCTAGC 2 cut(s) 899, 972
BspPI GGATC 2 cut(s) 157, 170
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 444, 847
BsrI ACTGG 2 cut(s) 216, 1041
BssECI CCNNGG 6 cut(s) 91, 167, 235, 405, 930, 1127
BssMI GATC 3 cut(s) 162, 568, 1077
BssSI CACGAG 1 cut(s) 881
BssT1I CCWWGG 2 cut(s) 167, 405
Bst2BI CACGAG 1 cut(s) 881
Bst2UI CCWGG 4 cut(s) 93, 932, 1103, 1128
Bst4CI ACNGT 2 cut(s) 137, 152
Bst6I CTCTTC 2 cut(s) 48, 306
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 6 cut(s) 76, 576, 832, 897, 970, 1099
BstDEI CTNAG 9 cut(s) 79, 85, 258, 362, 486, 605, 686, 730, 748
BstF5I GGATG 5 cut(s) 107, 295, 529, 940, 988
BstFNI CGCG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 165, 571, 1080
BstMAI GTCTC 2 cut(s) 88, 263
BstMBI GATC 3 cut(s) 162, 568, 1077
BstMWI GCNNNNNNNGC 5 cut(s) 179, 212, 649, 815, 965
BstNI CCWGG 4 cut(s) 93, 932, 1103, 1128
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 4 cut(s) 91, 930, 1101, 1126
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 2 cut(s) 162, 568
BstYI RGATCY 2 cut(s) 162, 568
BsuRI GGCC 4 cut(s) 173, 206, 728, 1101
BtgZI GCGATG 2 cut(s) 276, 624
BtsCI GGATG 5 cut(s) 107, 295, 529, 940, 988
BtsIMutI CAGTG 2 cut(s) 133, 157
BveI ACCTGC 1 cut(s) 1112
Cac8I GCNNGC 6 cut(s) 76, 576, 832, 897, 970, 1099
CaiI CAGNNNCTG 3 cut(s) 74, 92, 1127
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 171, 1124
Csp6I GTAC 2 cut(s) 594, 1034
CviAII CATG 5 cut(s) 266, 286, 504, 906, 1084
CviQI GTAC 2 cut(s) 594, 1034
DdeI CTNAG 9 cut(s) 79, 85, 258, 362, 486, 605, 686, 730, 748
DpnI GATC 3 cut(s) 164, 570, 1079
DpnII GATC 3 cut(s) 162, 568, 1077
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 48, 306
EarI CTCTTC 2 cut(s) 48, 306
Eco130I CCWWGG 2 cut(s) 167, 405
Eco24I GRGCYC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 1124
Eco57I CTGAAG 1 cut(s) 330
Eco72I CACGTG 1 cut(s) 1031
Eco88I CYCGRG 2 cut(s) 120, 234
EcoO109I RGGNCCY 2 cut(s) 171, 1124
EcoRII CCWGG 4 cut(s) 91, 930, 1101, 1126
EcoRV GATATC 1 cut(s) 635
EcoT14I CCWWGG 2 cut(s) 167, 405
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 2 cut(s) 167, 405
FaeI CATG 5 cut(s) 269, 289, 507, 909, 1087
FaqI GGGAC 3 cut(s) 74, 455, 750
FatI CATG 5 cut(s) 265, 285, 503, 905, 1083
FauI CCCGC 1 cut(s) 727
FauNDI CATATG 1 cut(s) 1060
FbaI TGATCA 1 cut(s) 1077
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 5 cut(s) 94, 282, 536, 947, 995
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 6 cut(s) 248, 305, 653, 785, 896, 969
GlaI GCGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 4 cut(s) 173, 206, 728, 1101
HhaI GCGC 1 cut(s) 217
Hin1II CATG 5 cut(s) 269, 289, 507, 909, 1087
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 3 cut(s) 118, 738, 877
HphI GGTGA 3 cut(s) 362, 394, 446
Hpy166II GTNNAC 3 cut(s) 402, 454, 1034
Hpy188I TCNGA 5 cut(s) 143, 224, 327, 530, 927
Hpy188III TCNNGA 6 cut(s) 115, 266, 299, 676, 881, 1070
Hpy8I GTNNAC 3 cut(s) 402, 454, 1034
HpyAV CCTTC 3 cut(s) 196, 385, 521
HpyCH4III ACNGT 2 cut(s) 137, 152
HpyCH4IV ACGT 1 cut(s) 1030
HpyCH4V TGCA 7 cut(s) 155, 507, 536, 554, 809, 905, 993
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 212, 649, 815, 965
HpyF3I CTNAG 9 cut(s) 79, 85, 258, 362, 486, 605, 686, 730, 748
HpySE526I ACGT 1 cut(s) 1030
Hsp92II CATG 5 cut(s) 269, 289, 507, 909, 1087
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 3 cut(s) 162, 568, 1077
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 3 cut(s) 71, 240, 582
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 4 cut(s) 299, 304, 523, 563
MaeI CTAG 6 cut(s) 248, 305, 653, 785, 896, 969
MaeII ACGT 1 cut(s) 1030
MaeIII GTNAC 2 cut(s) 615, 766
MalI GATC 3 cut(s) 164, 570, 1079
MboI GATC 3 cut(s) 162, 568, 1077
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 2 cut(s) 162, 568
MhlI GDGCHC 2 cut(s) 245, 587
MlyI GAGTC 2 cut(s) 112, 732
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 2 cut(s) 548, 1144
MspA1I CMGCKG 1 cut(s) 578
MspR9I CCNGG 4 cut(s) 93, 932, 1103, 1128
MunI CAATTG 1 cut(s) 819
MvaI CCWGG 4 cut(s) 93, 932, 1103, 1128
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 5 cut(s) 179, 212, 649, 815, 965
NdeI CATATG 1 cut(s) 1060
NdeII GATC 3 cut(s) 162, 568, 1077
NheI GCTAGC 2 cut(s) 895, 968
NlaIII CATG 5 cut(s) 269, 289, 507, 909, 1087
NlaIV GGNNCC 3 cut(s) 164, 232, 242
NmuCI GTSAC 2 cut(s) 615, 766
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 1 cut(s) 909
PaeR7I CTCGAG 1 cut(s) 120
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 877
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 2 cut(s) 112, 732
PmaCI CACGTG 1 cut(s) 1031
PmlI CACGTG 1 cut(s) 1031
PpsI GAGTC 2 cut(s) 112, 732
Ppu21I YACGTR 1 cut(s) 1031
PpuMI RGGWCCY 1 cut(s) 1124
PsiI TTATAA 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 1124
Psp6I CCWGG 4 cut(s) 91, 930, 1101, 1126
PspCI CACGTG 1 cut(s) 1031
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 4 cut(s) 91, 930, 1101, 1126
PspN4I GGNNCC 3 cut(s) 164, 232, 242
PspPI GGNCC 2 cut(s) 171, 1124
PspPPI RGGWCCY 1 cut(s) 1124
PspXI VCTCGAGB 1 cut(s) 120
PstNI CAGNNNCTG 3 cut(s) 74, 92, 1127
PsuI RGATCY 2 cut(s) 162, 568
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 595, 1035
RsaNI GTAC 2 cut(s) 594, 1034
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 548, 1144
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 162, 568, 1077
Sau96I GGNCC 2 cut(s) 171, 1124
SchI GAGTC 2 cut(s) 112, 732
ScrFI CCNGG 4 cut(s) 93, 932, 1103, 1128
SduI GDGCHC 2 cut(s) 245, 587
SfaNI GCATC 4 cut(s) 299, 304, 523, 563
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 1124
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 113, 120
SmoI CTYRAG 2 cut(s) 113, 120
SsiI CCGC 3 cut(s) 377, 515, 734
SspMI CTAG 6 cut(s) 248, 305, 653, 785, 896, 969
StyD4I CCNGG 4 cut(s) 91, 930, 1101, 1126
StyI CCWWGG 2 cut(s) 167, 405
TaaI ACNGT 2 cut(s) 137, 152
TaiI ACGT 1 cut(s) 1033
TaqI TCGA 2 cut(s) 121, 1046
TatI WGTACW 1 cut(s) 1033
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 2 cut(s) 548, 1144
Tru9I TTAA 2 cut(s) 548, 1144
TscAI CASTG 2 cut(s) 140, 157
TseFI GTSAC 2 cut(s) 615, 766
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 615, 766
TspDTI ATGAA 3 cut(s) 476, 714, 804
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 2 cut(s) 140, 157
VpaK11BI GGWCC 1 cut(s) 1124
XapI RAATTY 1 cut(s) 658
XceI RCATGY 1 cut(s) 909
XhoI CTCGAG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 6 cut(s) 248, 305, 653, 785, 896, 969
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.