Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Forward (+)

4916005 .. 4918334

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTAGGGGGAAAGTGGAGCTGAAGAGAATAGAGAATCCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCAGCATCCTAAAGAAAGCCTTTGAGCTTTCCGTGCTTTGCGATACTGAAGTTGCTCTCATCGTTTTCTCTCCCTCCAGCAAGCCCGACCTATATGCAAGCCATGACATAAATAGAACGATTGCGATGTATAGAAGTCAAGTAGGACTGCATCAATCAAGTAACCCTGCATGCTCTACAAGGATTACAACCATGGAGCAGTTATGGAGGTATGAAACTGAAGAGTTAAGAAGGTTAACACAGAACTTGGAAATGAAGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATTTTGGGTATGCAAGAGTTAAAACAGCTAGAGAGACAGTTAAAGACTGGGCTGGAACGCATCCGCTCTAGAATGAGATGGATCATTTCAGAGAATATCAGCTTGCTGAAAAGAAAGAATAAAGCACTGCAAGAGGAAAACGCGCGTCTGCAGAAGAGAGTTAAGTTGCAGGAGCTTGAGTATGGTGTGGCAAGCAGCTCGATAACATTTGGAACAAGTGCACCAAATGTTATTACATTTCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

204

Amino Acids

23.37

Weight (kDa)

10.04

Isoelectric Point (pI)

64.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	1.2e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	89 - 175	1.5e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	429
AccII	CGCG	2 cut(s)	506, 508
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	3 cut(s)	44, 144, 315
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	605
AluBI	AGCT	9 cut(s)	22, 103, 334, 347, 358, 391, 465, 538, 561
AluI	AGCT	9 cut(s)	22, 103, 334, 347, 358, 391, 465, 538, 561
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	391
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	1 cut(s)	452
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	586
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 543, 577
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	392, 432
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	90, 235, 432
BmuI	ACTGGG	1 cut(s)	420
BpmI	CTGGAG	2 cut(s)	136, 369
BpuEI	CTTGAG	2 cut(s)	320, 560
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	81, 423
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	506, 508
BsiHKAI	GWGCWC	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	2 cut(s)	42, 444
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	427
BspFNI	CGCG	2 cut(s)	506, 508
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	42, 444
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	3 cut(s)	20, 291, 512
BstC8I	GCNNGC	6 cut(s)	50, 158, 175, 247, 467, 556
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	81, 423
BstFNI	CGCG	2 cut(s)	506, 508
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	45, 447
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	2 cut(s)	42, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 109
BstNSI	RCATGY	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	2 cut(s)	506, 508
BstV1I	GCAGC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	81, 423
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	6 cut(s)	50, 158, 175, 247, 467, 556
CfoI	GCGC	1 cut(s)	508
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	179, 246, 268
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	44, 446
DpnII	GATC	2 cut(s)	42, 444
Eam1104I	CTCTTC	3 cut(s)	20, 291, 512
EarI	CTCTTC	3 cut(s)	20, 291, 512
Eco130I	CCWWGG	1 cut(s)	267
Eco57I	CTGAAG	3 cut(s)	44, 144, 315
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	182, 249, 271
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	3 cut(s)	178, 245, 267
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	2 cut(s)	68, 410
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	2 cut(s)	392, 432
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	559
GsuI	CTGGAG	2 cut(s)	136, 369
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	3 cut(s)	182, 249, 271
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	37
HpaI	GTTAAC	1 cut(s)	312
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	312, 584
Hpy188I	TCNGA	2 cut(s)	42, 454
Hpy188III	TCNNGA	2 cut(s)	337, 432
Hpy8I	GTNNAC	2 cut(s)	312, 584
HpyAV	CCTTC	2 cut(s)	70, 300
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	8 cut(s)	173, 226, 245, 376, 493, 514, 532, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 109
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	182, 249, 271
HspAI	GCGC	1 cut(s)	506
KspAI	GTTAAC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	42, 444
LmnI	GCTCC	4 cut(s)	19, 271, 350, 535
LpnPI	CCDG	9 cut(s)	34, 38, 91, 166, 255, 333, 396, 401, 518
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	3 cut(s)	90, 235, 432
MaeI	CTAG	2 cut(s)	392, 432
MaeIII	GTNAC	2 cut(s)	55, 236
MalI	GATC	2 cut(s)	44, 446
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	2 cut(s)	42, 444
MboII	GAAGA	3 cut(s)	37, 308, 529
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	1 cut(s)	363
MnlI	CCTC	3 cut(s)	160, 276, 490
MseI	TTAA	5 cut(s)	302, 311, 383, 404, 525
MvnI	CGCG	2 cut(s)	506, 508
MwoI	GCNNNNNNNGC	2 cut(s)	78, 109
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	42, 444
NlaIII	CATG	3 cut(s)	182, 249, 271
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	560
PspEI	GGTNACC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	5 cut(s)	302, 311, 383, 404, 525
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	2 cut(s)	42, 444
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	3 cut(s)	90, 235, 432
SfcI	CTRYAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	335, 539
SmoI	CTYRAG	2 cut(s)	335, 539
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	2 cut(s)	392, 432
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	563
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	5 cut(s)	302, 311, 383, 404, 525
Tru9I	TTAA	5 cut(s)	302, 311, 383, 404, 525
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	303, 344
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	495
VneI	GTGCAC	1 cut(s)	582
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	249
XspI	CTAG	2 cut(s)	392, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.