Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Forward (+)

60459874 .. 60461955

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGGAGGGGAAAAGTGGAGCTGAAGAGAATAGAGAGTCCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAATCTTTATCAATATGCAAGCCATGACATAAATAGAACGATTGCGATGTATAGAAGTGAAGTAGGACTCCCTCAATCAAGTAATCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTATGGAGGAATGAAACTGAAGAGTTAAGAAGGTCAATACAGAAATTGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCTTGCTGAAAAGGAAGGGTTCTTCTTCTTCGTCAGGATCGATATTTGCTGCTGTAATGCTGTCATACCCGCTAAACAAGCATCAAACTAAAATAATCATTTCCACGATCCGACCTTGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

10.34

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	90 - 161	1.8e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	3 cut(s)	424, 460, 530
AclWI	GGATC	3 cut(s)	449, 505, 562
AcuI	CTGAAG	3 cut(s)	44, 144, 312
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	382, 416
AluBI	AGCT	6 cut(s)	22, 103, 344, 355, 388, 582
AluI	AGCT	6 cut(s)	22, 103, 344, 355, 388, 582
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	3 cut(s)	449, 505, 562
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	389, 583
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	4 cut(s)	90, 109, 429, 550
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	267, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	267, 575
BseGI	GGATG	2 cut(s)	81, 420
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	42, 441, 497, 567
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	3 cut(s)	424, 460, 530
BspANI	GGCC	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	500
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	449, 505, 562
BsrBI	CCGCTC	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	267, 575
BssMI	GATC	4 cut(s)	42, 441, 497, 567
BssT1I	CCWWGG	2 cut(s)	267, 575
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	20, 288
BstC8I	GCNNGC	5 cut(s)	50, 175, 247, 371, 464
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 420
BstKTI	GATC	4 cut(s)	45, 444, 500, 570
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	42, 441, 497, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 128, 361, 370, 538
BstNSI	RCATGY	2 cut(s)	249, 373
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	132, 215
BtsCI	GGATG	2 cut(s)	81, 420
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	50, 175, 247, 371, 464
Cfr10I	RCCGGY	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	179, 246, 268, 370
CviJI	RGCY	9 cut(s)	22, 95, 103, 177, 331, 344, 355, 388, 582
CviKI_1	RGCY	9 cut(s)	22, 95, 103, 177, 331, 344, 355, 388, 582
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	4 cut(s)	44, 443, 499, 569
DpnII	GATC	4 cut(s)	42, 441, 497, 567
Eam1104I	CTCTTC	2 cut(s)	20, 288
EarI	CTCTTC	2 cut(s)	20, 288
Eco130I	CCWWGG	2 cut(s)	267, 575
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	44, 144, 312
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	267, 575
ErhI	CCWWGG	2 cut(s)	267, 575
FaeI	CATG	4 cut(s)	182, 249, 271, 373
FaiI	YATR	9 cut(s)	171, 180, 185, 207, 247, 269, 277, 371, 526
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	4 cut(s)	178, 245, 267, 369
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	68, 407
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	389, 583
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
Hin1II	CATG	4 cut(s)	182, 249, 271, 373
HinfI	GANTC	2 cut(s)	37, 222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	42, 430, 451, 572
Hpy188III	TCNNGA	2 cut(s)	334, 495
HpyAV	CCTTC	4 cut(s)	70, 85, 297, 469
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	173, 245, 373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 128, 361, 370, 538
HpyF3I	CTNAG	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	182, 249, 271, 373
Kzo9I	GATC	4 cut(s)	42, 441, 497, 567
LmnI	GCTCC	3 cut(s)	19, 347, 579
LpnPI	CCDG	9 cut(s)	34, 38, 91, 166, 255, 330, 350, 393, 480
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	4 cut(s)	90, 109, 429, 550
MaeI	CTAG	2 cut(s)	389, 583
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	44, 443, 499, 569
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	4 cut(s)	42, 441, 497, 567
MboII	GAAGA	5 cut(s)	37, 305, 474, 477, 480
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	46, 216
MnlI	CCTC	6 cut(s)	122, 143, 160, 237, 273, 321
MseI	TTAA	2 cut(s)	299, 401
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	5 cut(s)	78, 128, 361, 370, 538
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	4 cut(s)	42, 441, 497, 567
NlaIII	CATG	4 cut(s)	182, 249, 271, 373
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	249, 373
PaeI	GCATGC	2 cut(s)	249, 373
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	45, 216
PpsI	GAGTC	2 cut(s)	45, 216
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	299, 401
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	4 cut(s)	42, 441, 497, 567
SchI	GAGTC	2 cut(s)	46, 216
SfaNI	GCATC	4 cut(s)	90, 109, 429, 550
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	2 cut(s)	249, 373
Sse9I	AATT	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	424, 460, 530
SspMI	CTAG	2 cut(s)	389, 583
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	267, 575
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	299, 401
Tru9I	TTAA	2 cut(s)	299, 401
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	2 cut(s)	97, 454
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	2 cut(s)	249, 373
XspI	CTAG	2 cut(s)	389, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.