Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

8559824 .. 8562256

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG110600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGGAGGCGAAAAGTGGAGCTGAAGAGAATAGAGAGTCCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAAGCTTTATCAATATGCAAGCCATGACATAAATAGAACGATTGCGATGTATAGAAGTGAAATAGGACTCCCTCAATCAAGTAACCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTACGGAGGAATGAAACTGAAGAGTTAAGATGGTCAATACAGAAATTGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTCTCAATGCTGGGCATGAAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCATGCTGAAAAGGAAGCATAAAGCACAGCAAGAGGAAAATAGGCGTCTGCAGAAAAGAGTGAGATTTTCTTTACCAGCACTTTTTTTTTTGGTTCTATATATGAATGATAAATATGGTTCAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

196

Amino Acids

22.89

Weight (kDa)

10.44

Isoelectric Point (pI)

73.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	93 - 174	2e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	2 cut(s)	424, 460
AclWI	GGATC	1 cut(s)	449
AcuI	CTGAAG	3 cut(s)	44, 144, 312
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	382, 416
AluBI	AGCT	6 cut(s)	22, 103, 160, 344, 355, 388
AluI	AGCT	6 cut(s)	22, 103, 160, 344, 355, 388
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	90, 109, 429
BmuI	ACTGGG	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	81, 420
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	42, 441
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	424, 460
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	42, 441
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	20, 288
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	5 cut(s)	50, 158, 175, 247, 464
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 420
BstKTI	GATC	2 cut(s)	45, 444
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	42, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 128, 361
BstNSI	RCATGY	2 cut(s)	249, 466
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	132, 215
BtsCI	GGATG	2 cut(s)	81, 420
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	50, 158, 175, 247, 464
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	5 cut(s)	179, 246, 268, 370, 463
CviJI	RGCY	9 cut(s)	22, 95, 103, 160, 177, 331, 344, 355, 388
CviKI_1	RGCY	9 cut(s)	22, 95, 103, 160, 177, 331, 344, 355, 388
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	2 cut(s)	44, 443
DpnII	GATC	2 cut(s)	42, 441
Eam1104I	CTCTTC	2 cut(s)	20, 288
EarI	CTCTTC	2 cut(s)	20, 288
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	44, 144, 312
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	5 cut(s)	182, 249, 271, 373, 466
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	5 cut(s)	178, 245, 267, 369, 462
FokI	GGATG	2 cut(s)	68, 407
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	389
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
HgaI	GACGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	5 cut(s)	182, 249, 271, 373, 466
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	37, 222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	42, 430, 451
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	173, 245, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 128, 361
HpyF3I	CTNAG	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	5 cut(s)	182, 249, 271, 373, 466
Kzo9I	GATC	2 cut(s)	42, 441
LmnI	GCTCC	2 cut(s)	19, 347
LpnPI	CCDG	9 cut(s)	34, 38, 91, 166, 255, 330, 350, 393, 549
LweI	GCATC	3 cut(s)	90, 109, 429
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	55, 236, 273
MalI	GATC	2 cut(s)	44, 443
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	2 cut(s)	42, 441
MboII	GAAGA	2 cut(s)	37, 305
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	2 cut(s)	317, 586
MlyI	GAGTC	2 cut(s)	46, 216
MnlI	CCTC	7 cut(s)	122, 143, 160, 237, 273, 321, 487
MseI	TTAA	3 cut(s)	299, 401, 589
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	3 cut(s)	78, 128, 361
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	42, 441
NlaIII	CATG	5 cut(s)	182, 249, 271, 373, 466
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	249, 466
PaeI	GCATGC	2 cut(s)	249, 466
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PleI	GAGTC	2 cut(s)	45, 216
PpsI	GAGTC	2 cut(s)	45, 216
Psp124BI	GAGCTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	513
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	299, 401, 589
Sau3AI	GATC	2 cut(s)	42, 441
SchI	GAGTC	2 cut(s)	46, 216
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	24, 57, 62, 105, 162, 346, 357, 390
SfaNI	GCATC	3 cut(s)	90, 109, 429
SfcI	CTRYAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	2 cut(s)	249, 466
Sse9I	AATT	2 cut(s)	317, 586
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	424, 460
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	399
TasI	AATT	2 cut(s)	317, 586
Tru1I	TTAA	3 cut(s)	299, 401, 589
Tru9I	TTAA	3 cut(s)	299, 401, 589
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	300, 386, 578
TspGWI	ACGGA	3 cut(s)	97, 292, 454
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	2 cut(s)	249, 466
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.