Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000512.1

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

97920 .. 98897

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000512.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggggaggcgaaaagtggagctgaagagaatagagaattcgatcagcaggcaggtgaccttctcaaaacgccgtaccggcatcctaaagaaggcctttgagctttccgtcctctgcgatgctgaagttgccctcatcgttttctctccctccggcaagctttatcaatatgcaagccatgacataaatagaacgattgcgatgtatagaagtgaaataggactccctcaatcaagtaaccctgcatgctctacaaggattggaaccatggagttacggaggattaatgaaactgaagagttaagaaggtcaatacagaaattggaaatgaggctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

113

Amino Acids

13.05

Weight (kDa)

10.22

Isoelectric Point (pI)

78.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	3 cut(s)	44, 144, 315
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AluBI	AGCT	3 cut(s)	22, 103, 160
AluI	AGCT	3 cut(s)	22, 103, 160
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	2 cut(s)	90, 109
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	267
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	20, 291
BstC8I	GCNNGC	4 cut(s)	50, 158, 175, 247
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 128
BstNSI	RCATGY	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	132, 215
BtsCI	GGATG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	50, 158, 175, 247
Cfr10I	RCCGGY	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	179, 246, 268
CviJI	RGCY	6 cut(s)	22, 95, 103, 160, 177, 334
CviKI_1	RGCY	6 cut(s)	22, 95, 103, 160, 177, 334
CviQI	GTAC	1 cut(s)	75
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	20, 291
EarI	CTCTTC	2 cut(s)	20, 291
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	44, 144, 315
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	182, 249, 271
FaiI	YATR	6 cut(s)	171, 180, 185, 207, 247, 269
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	3 cut(s)	178, 245, 267
FokI	GGATG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
Hin1II	CATG	3 cut(s)	182, 249, 271
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	70, 85, 300
HpyCH4V	TGCA	2 cut(s)	173, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 128
Hsp92II	CATG	3 cut(s)	182, 249, 271
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	34, 38, 91, 166, 255
LweI	GCATC	2 cut(s)	90, 109
MaeIII	GTNAC	3 cut(s)	55, 236, 273
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	37, 308
MluCI	AATT	2 cut(s)	37, 320
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	122, 143, 160, 237, 273, 324
MseI	TTAA	2 cut(s)	285, 302
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	2 cut(s)	78, 128
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	182, 249, 271
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	285, 302
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	216
SetI	ASST	6 cut(s)	24, 57, 62, 105, 162, 311
SfaNI	GCATC	2 cut(s)	90, 109
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	2 cut(s)	37, 320
SseBI	AGGCCT	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	37, 320
Tru1I	TTAA	2 cut(s)	285, 302
Tru9I	TTAA	2 cut(s)	285, 302
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	2 cut(s)	97, 292
VspI	ATTAAT	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.