Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

8382068 .. 8384481

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG105800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGGCGAAAAGTGGAGCTGAAGAGAATAGAGAGTTCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAAGCTTTATCAATATGCAAGCCATGACATAAATAGAACGATTGCGATGTATAGAAGTGAAATAGGACTCCCTCAATCAAGTAACCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTACGGAGGATTAATGAAACTGAAGAGTTAAGAAGGTCAATACAGAAATTGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCATGCTGAAAAAGAAGCATAAAGCACAGCAAGAGGAAAATAGGCTTCTGCAGAAAAGATTGCACGAGCTTGATCAATATGGTAATGCAAGCTGCTCGATAACATTGGGAGCAAGTGCACGCAATGTGATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

203

Amino Acids

23.3

Weight (kDa)

10.22

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	96 - 175	2e-15	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	429
AciI	CCGC	2 cut(s)	427, 463
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	3 cut(s)	44, 144, 315
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	385, 419
AluBI	AGCT	8 cut(s)	22, 103, 160, 347, 358, 391, 532, 555
AluI	AGCT	8 cut(s)	22, 103, 160, 347, 358, 391, 532, 555
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	1 cut(s)	391
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	555
AseI	ATTAAT	2 cut(s)	285, 594
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	583
BauI	CACGAG	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	392, 610
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	90, 109, 432
BmuI	ACTGGG	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	81, 423
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	542
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	42, 444, 535
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	427, 463
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	42, 444, 535
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	2 cut(s)	20, 291
BstC8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 374, 467, 553, 583
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 423
BstKTI	GATC	3 cut(s)	45, 447, 538
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	3 cut(s)	42, 444, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 128, 364, 373
BstNSI	RCATGY	3 cut(s)	249, 376, 469
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	132, 215
BtsCI	GGATG	2 cut(s)	81, 423
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 374, 467, 553, 583
Cfr10I	RCCGGY	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	5 cut(s)	179, 246, 268, 373, 466
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	3 cut(s)	44, 446, 537
DpnII	GATC	3 cut(s)	42, 444, 535
Eam1104I	CTCTTC	2 cut(s)	20, 291
EarI	CTCTTC	2 cut(s)	20, 291
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	44, 144, 315
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	5 cut(s)	182, 249, 271, 376, 469
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	5 cut(s)	178, 245, 267, 372, 465
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	556
FokI	GGATG	2 cut(s)	68, 410
Fsp4HI	GCNGC	1 cut(s)	556
FspBI	CTAG	2 cut(s)	392, 610
GluI	GCNGC	1 cut(s)	556
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
Hin1II	CATG	5 cut(s)	182, 249, 271, 376, 469
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	3 cut(s)	433, 454, 606
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	70, 85, 300
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	8 cut(s)	173, 245, 376, 514, 526, 551, 581, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 128, 364, 373
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	5 cut(s)	182, 249, 271, 376, 469
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	42, 444, 535
LmnI	GCTCC	3 cut(s)	19, 350, 572
LpnPI	CCDG	8 cut(s)	34, 38, 91, 166, 255, 333, 353, 396
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	90, 109, 432
MaeI	CTAG	2 cut(s)	392, 610
MaeIII	GTNAC	3 cut(s)	55, 236, 273
MalI	GATC	3 cut(s)	44, 446, 537
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	3 cut(s)	42, 444, 535
MboII	GAAGA	2 cut(s)	37, 308
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	122, 143, 160, 237, 273, 324, 490
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	4 cut(s)	285, 302, 404, 594
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	4 cut(s)	78, 128, 364, 373
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	42, 444, 535
NlaIII	CATG	5 cut(s)	182, 249, 271, 376, 469
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	3 cut(s)	249, 376, 469
PaeI	GCATGC	3 cut(s)	249, 376, 469
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshBI	ATTAAT	2 cut(s)	285, 594
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	4 cut(s)	285, 302, 404, 594
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	3 cut(s)	42, 444, 535
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	3 cut(s)	90, 109, 432
SfcI	CTRYAG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SphI	GCATGC	3 cut(s)	249, 376, 469
Sse9I	AATT	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	427, 463
SspMI	CTAG	2 cut(s)	392, 610
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	41, 560
TasI	AATT	1 cut(s)	320
Tru1I	TTAA	4 cut(s)	285, 302, 404, 594
Tru9I	TTAA	4 cut(s)	285, 302, 404, 594
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	3 cut(s)	97, 292, 457
VneI	GTGCAC	1 cut(s)	579
VspI	ATTAAT	2 cut(s)	285, 594
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	3 cut(s)	249, 376, 469
XspI	CTAG	2 cut(s)	392, 610
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.