Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

8200523 .. 8202948

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTATAGAAGTGAAGTAGGACTCCCTCAATCAAGTAACCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTATGGAGGAATGAATTCGAAACTGAAGAGTTAAGAAGGTCAATACAGAAAATGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCTTGCTGAAAAGGAAGCATAAAGCACAGCAAGAGGAAAATAGGCGTCTGCAGAAAAGATTGCACGAGCTTGATCAATATGGTAATGCAAGCAGCTCGATAACATTGGGAGCAAGTGCACGCAATGTGATTATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

138

Amino Acids

16.05

Weight (kDa)

10.15

Isoelectric Point (pI)

71.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	30 - 109	6.9e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	231
AciI	CCGC	2 cut(s)	229, 265
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	187, 221
AluBI	AGCT	5 cut(s)	149, 160, 193, 334, 360
AluI	AGCT	5 cut(s)	149, 160, 193, 334, 360
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	193
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	254
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	385
BauI	CACGAG	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	194, 415
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	246, 337
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	229, 265
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	246, 337
BssNI	GRCGYC	1 cut(s)	310
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	5 cut(s)	46, 176, 269, 355, 385
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	249, 340
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	246, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 175
BstNSI	RCATGY	2 cut(s)	48, 178
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	5 cut(s)	46, 176, 269, 355, 385
CseI	GACGC	1 cut(s)	299
CviAII	CATG	3 cut(s)	45, 67, 175
CviJI	RGCY	6 cut(s)	136, 149, 160, 193, 334, 360
CviKI_1	RGCY	6 cut(s)	136, 149, 160, 193, 334, 360
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	2 cut(s)	248, 339
DpnII	GATC	2 cut(s)	246, 337
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	48, 70, 178
FaiI	YATR	7 cut(s)	6, 46, 68, 76, 176, 285, 345
FatI	CATG	3 cut(s)	44, 66, 174
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	2 cut(s)	194, 415
GluI	GCNGC	1 cut(s)	358
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	48, 70, 178
HinfI	GANTC	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	235, 256, 411
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	7 cut(s)	44, 178, 316, 328, 353, 383, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 175
HpyF3I	CTNAG	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	48, 70, 178
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	246, 337
LmnI	GCTCC	2 cut(s)	152, 374
LpnPI	CCDG	4 cut(s)	54, 135, 155, 198
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	194, 415
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	248, 339
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	246, 337
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	36, 72, 126, 292
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	3 cut(s)	104, 206, 399
MwoI	GCNNNNNNNGC	2 cut(s)	166, 175
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	246, 337
NlaIII	CATG	3 cut(s)	48, 70, 178
NlaIV	GGNNCC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	2 cut(s)	48, 178
NspV	TTCGAA	1 cut(s)	90
PaeI	GCATGC	2 cut(s)	48, 178
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	104, 206, 399
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	246, 337
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	7 cut(s)	113, 151, 162, 195, 336, 362, 416
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	2 cut(s)	48, 178
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	229, 265
SspMI	CTAG	2 cut(s)	194, 415
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	90, 362
TasI	AATT	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	104, 206, 399
Tru9I	TTAA	3 cut(s)	104, 206, 399
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	2 cut(s)	48, 178
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	194, 415
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.