Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

24964301 .. 24968951

Gene Structure 4651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1155500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGAGGGGGAAAGTGGAGCTGAAGAGAATAGATAACCCAACAAGCAGACAGGTGACATTCTCAAAACGCAGAAATGGACTTCTGAAGAAGGCTTTTGAGCTCTCTATCCTCTGCGATGCTGAAGTTGCCCTCATCATCTTCTCTCCATCTGGCAAGGCCTACCAATTTGCAAGCCACGACATAACTAGGACCATTTCCATGTATAGAAGGGAAGTAGGGTTGCCTGAATCCAACAACTCAAGCTTCTTAAGGGCCAGAACAATGGAGTATTGGAGGAATGAAAATGAAGAGTTAAGAAGATCAATAGGGAACTTGGAAATGAGGCTGATGAACTTGGCTGGGGAAGAGCTATCAACGCTTGGCGTGCAAGAGCTAAAGCAGCTGGAAAGACAGTTAAAAACTGGGGTTGAACGCATCCGCTCTAAAATGAGACGGATCATTTCGGAGAACGTTAGCTTGCTGAAAAGAAAGCATAAAGCATCGCAAGAAGAAAACACGCATCTGCTAAAAAGAATTAAGTTGCACGAGCTTAATGTTGCTGATGCCTCCTGCTCGACAACTACTGTGGGAGCAAATGCACGCATTAGTGCATTTCCAAGTGAACTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

10.04

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 173	2.7e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	423
AciI	CCGC	1 cut(s)	421
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	1 cut(s)	446
AcuI	CTGAAG	3 cut(s)	44, 107, 144
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	8 cut(s)	22, 103, 246, 352, 376, 385, 459, 532
AluI	AGCT	8 cut(s)	22, 103, 246, 352, 376, 385, 459, 532
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	159, 255
ApeKI	GCWGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	192, 255
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 255
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	5 cut(s)	109, 426, 491, 511, 535
BmuI	ACTGGG	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	161, 257
BsiHKAI	GWGCWC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	427
BsmBI	CGTCTC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	161, 257
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	302, 438
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	161, 257
BspPI	GGATC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	409
BssMI	GATC	2 cut(s)	302, 438
BssSI	CACGAG	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	396, 568
Bst6I	CTCTTC	3 cut(s)	20, 285, 342
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	4 cut(s)	175, 368, 461, 583
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	2 cut(s)	305, 441
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	2 cut(s)	302, 438
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 358, 367, 382
BstV1I	GCAGC	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	161, 257
BtgZI	GCGATG	2 cut(s)	132, 468
BtsCI	GGATG	1 cut(s)	417
Cac8I	GCNNGC	4 cut(s)	175, 368, 461, 583
Cfr13I	GGNCC	2 cut(s)	192, 255
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	1 cut(s)	202
DpnI	GATC	2 cut(s)	304, 440
DpnII	GATC	2 cut(s)	302, 438
Eam1104I	CTCTTC	3 cut(s)	20, 285, 342
EarI	CTCTTC	3 cut(s)	20, 285, 342
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 144
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	185, 203, 207, 477
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	383
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	161, 257
Hin1II	CATG	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	2 cut(s)	87, 448
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	85, 204
HpyCH4III	ACNGT	2 cut(s)	396, 568
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	5 cut(s)	173, 370, 526, 581, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 358, 367, 382
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	302, 438
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	19, 572
LpnPI	CCDG	8 cut(s)	38, 138, 240, 271, 327, 371, 390, 565
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	5 cut(s)	109, 426, 491, 511, 535
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	304, 440
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	2 cut(s)	302, 438
MboII	GAAGA	7 cut(s)	37, 100, 133, 302, 312, 359, 503
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	167, 516, 609
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	122, 143, 270, 318, 559
MseI	TTAA	5 cut(s)	251, 296, 398, 519, 534
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	385
MspCI	CTTAAG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	128, 358, 367, 382
NdeII	GATC	2 cut(s)	302, 438
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	192, 255
PvuII	CAGCTG	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	5 cut(s)	251, 296, 398, 519, 534
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	2 cut(s)	302, 438
Sau96I	GGNCC	2 cut(s)	192, 255
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	109, 426, 491, 511, 535
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	241, 250
SmoI	CTYRAG	2 cut(s)	241, 250
Sse9I	AATT	3 cut(s)	167, 516, 609
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	396, 568
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	167, 516, 609
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	5 cut(s)	251, 296, 398, 519, 534
Tru9I	TTAA	5 cut(s)	251, 296, 398, 519, 534
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	297, 303, 347
TspGWI	ACGGA	1 cut(s)	451
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	192
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.