Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

9171050 .. 9173210

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGGAGGCGAAAAGTGGAGCTGAAGAGAATAGAGAGTTCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAAGCTTTATCAATATGCAAGCCATGAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCATGCTGAAAAAGAAGCATAAAGCACAGCAAGAGGAAAATAGGCTTCTGCAGAAAAGAGTTAAGTTGCACGAGCTTGATCAATATGGTAATGCAAGCTGCTCGATAACATTGGGAGCAAGTGCACGCAATGTGATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

10.15

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	59 - 123	1.9e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	2 cut(s)	271, 307
AclWI	GGATC	1 cut(s)	296
AcuI	CTGAAG	2 cut(s)	44, 144
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	229, 263
AluBI	AGCT	8 cut(s)	22, 103, 160, 191, 202, 235, 382, 405
AluI	AGCT	8 cut(s)	22, 103, 160, 191, 202, 235, 382, 405
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	405
AseI	ATTAAT	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	236, 460
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	90, 109, 276
BmuI	ACTGGG	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	81, 267
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	42, 288, 385
BspACI	CCGC	2 cut(s)	271, 307
BspANI	GGCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	3 cut(s)	42, 288, 385
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	7 cut(s)	50, 158, 175, 218, 311, 403, 433
BstDEI	CTNAG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 267
BstKTI	GATC	3 cut(s)	45, 291, 388
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	42, 288, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 128, 208, 217
BstNSI	RCATGY	2 cut(s)	220, 313
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	356
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	81, 267
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	7 cut(s)	50, 158, 175, 218, 311, 403, 433
Cfr10I	RCCGGY	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	179, 217, 310
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	44, 290, 387
DpnII	GATC	3 cut(s)	42, 288, 385
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	44, 144
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	3 cut(s)	182, 220, 313
FaiI	YATR	6 cut(s)	171, 180, 218, 311, 327, 393
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	3 cut(s)	178, 216, 309
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	2 cut(s)	68, 254
Fsp4HI	GCNGC	1 cut(s)	406
FspBI	CTAG	2 cut(s)	236, 460
GluI	GCNGC	1 cut(s)	406
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
Hin1II	CATG	3 cut(s)	182, 220, 313
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	277, 298, 456
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	173, 220, 358, 376, 401, 431, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 128, 208, 217
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	182, 220, 313
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	42, 288, 385
LmnI	GCTCC	3 cut(s)	19, 194, 422
LpnPI	CCDG	7 cut(s)	34, 38, 91, 166, 177, 197, 240
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	3 cut(s)	90, 109, 276
MaeI	CTAG	2 cut(s)	236, 460
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	44, 290, 387
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	3 cut(s)	42, 288, 385
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	122, 143, 160, 334
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	3 cut(s)	248, 369, 444
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	4 cut(s)	78, 128, 208, 217
NdeII	GATC	3 cut(s)	42, 288, 385
NlaIII	CATG	3 cut(s)	182, 220, 313
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	2 cut(s)	220, 313
PaeI	GCATGC	2 cut(s)	220, 313
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	248, 369, 444
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	3 cut(s)	42, 288, 385
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	3 cut(s)	90, 109, 276
SfcI	CTRYAG	1 cut(s)	356
SphI	GCATGC	2 cut(s)	220, 313
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	271, 307
SspMI	CTAG	2 cut(s)	236, 460
StuI	AGGCCT	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	41, 410
Tru1I	TTAA	3 cut(s)	248, 369, 444
Tru9I	TTAA	3 cut(s)	248, 369, 444
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	2 cut(s)	97, 301
VneI	GTGCAC	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	2 cut(s)	220, 313
XspI	CTAG	2 cut(s)	236, 460
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.