Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

61594886 .. 61601032

Gene Structure 6147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0500500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGCGGAGCAGTTCAAAGGCCAACCCCGCCTTCCCAAATTCGCCGCCCCCAAACGCTACGACGTTAGCCTCAAACCGGACCTCGCCGCCTGCAAATTCGCCGGTTCCGTCGCCATCGACCTCGATATCGTCTCCGATACCAACTTCATTGTCCTCAATGCCGCCGAGCTCGCCGTCGACACCGCAACCGTCTCTTTCACTCACAAAAACTCTTCAGAGGTTTTCAAGCCTTTGAAAGCTGAGACATTCGAAGAAGATGGCATTTTGGTTTTGGAGTTTGGAGAGACACTTCCGACTGGGCCGGGAGTTTTGGCCATTGGGTTTGAAGGAATTTTGAATGACAAGATGAAGGGGTTCTATAGAAGTACATATGAGCATAATGGTGAGAAGAAAAATATGGCAGTTACCCAGTTTGAACCTGTTGATGCCAGGCGGTGCTTTCCCTGTTGGGACGAACCTGCTTGGAAGGCTACGTTCAAGATTACATTGGATGGTGTTCCATCTGAATTAGTAGCCCTTTCCAACATGCCGGTTGTTGAAGAAAAAGTGGATGGACATCTGAAGACAGTTTCATATCAGGAGACACCAATTATGTCTACATATTTAGTGGCTGTTGTTGTCGGATTGTTTGACTATGTTGAAGATCATACATCAGATGGAGTCAAAGTGCGCGTGTATTGTCAAGTTGGTAAAGCAAACCAAGGGAAACTTGCTTTGAACGTTGCTGTCAAAACACTTGAATTGTACAAAGAATACTTTGCTGTACCATACCCTTTGCCCAAATTGGATATGGTTGCAATTCCTGATTTTTCTGCTGGGGCCATGGAGAATTATGGTTTAGTTACATACCGTGAAACAGCTTTGCTCTTTGATGAACAGCATTCTGCAGCTGCCAACAAGCAAAGGGTTGCAACTGTGGTGGCACATGAATTGGCCCACCAGTGGTTTGGAAATCTTGTAACAATGGAATGGTGGACACATTTATGGCTGAATGAGGGATTTGCAACTTGGGTGAGCTATTTAGCTGCTGATAGCCTATTCCCTGAATGGAAAATATGGACTCAGTTTCTTGATGAATCTACTGAAGGTCTTAGGCTGGATGGGCTCGAAGAATCTCACCCTATCGAGGTGGAGATAAATCATGCTTGTGAGGTGGATGAAATATTTGATGCTATAAGCTATAGGAAAGGTGCTTCTGTTATTCGGATGCTACAAAGCTATCTTGGTGCTGAACCCTTTCAGAGGTCACTGGCTTCATATATAAAAAAGCATGCCTACTCAAATGCAAAAACAGAAGATCTATGGGCTGCCCTGGAGGAAGGATCTGGTGAACCTGTGAACAAGCTAATGAATTCATGGACAAAGCAACAAGGTTACCCAGTTGTTTCCGTCAAGGTCAAAGATCAGAAATTGGAGTTTGAACAGACACAATTCTTGTCAAGTGGTTCTGAAGGCACTGGGCAATGGATCGTGCCGATAACATTATGCTGTGGCTCATATGATGTACGCAAAAGTTTCCTACTACAAACAAAGTCCGAAAGTCTGGACATAAAGGAATTTCTGGGTTGCTCAGTAGCGGAGACTGGAAGCACATGCAATAAAAACAATGGACAATGTGGTTGGATAAAGCTCAATGTGGATCGGGCAGGTTTTTACAGGGTGAAATATGATGATAAACTTGCAGCTCAATTAAGAAATGCGATAGAGAAGAAATACTTGTCTGCAACTGACAGATATGGCATCTTGGATGATGCAGCTGCCCTTACTACGGCTCGCAAGCAGTCTTTTGTCTCATTGCTTACCTTGTTGGGTGCTTACAGAGAGGAACTTGACTACACAGTGCTTTCAAATCTGATTACTGTAAGTTATAAGCTGAAAAGAATTGCTGATGATGCTGTACCTGAGCTAGTGGATCTCCTTAATCAGTTCTTTATTGGCCTTCTCCAGTACCCTGCAGAGAAGCTTGGTTGGCAACCAAAACCGGGCGAGAGCCATTTAGATGCAATGTTGAGAGGAGAACTTTTGACTGCCCTTGTTTCATTTGGACATGATCTAACAATTGATGAAGCAATCAAGCGGTTTAATGCCTTCTTAGATGACAGAAATACATCACTCCTTCCTCCTGACATAAGAAGGGCAGCATATGTGGCTGTAATGCAACGAGTAACTGCATCTAACAGATCGGGCTATGAATCTCTTCTTAGAGTTTACAGAGAGACTGATCTAAGCCAGGAGAAGACCCGCATTTTAGGTTCACTAGCATCGTGTCCAGATCCTGACATAATACTTGAAGTTCTCAACTTTTTGTTGACTAAAGAGGTTCGTAGTCAGGATGCTGTCTTTGGACTAGCTGTTGGTAGTGAAGGACGAGAAACAGCTTGGACGTGGCTGAAGAATAACTGGGAGCACATCTCTAAGACCTGGGGTTCTGGATTTCTGATTACTCGCTTTGTCAGTGCAACCGTCTCACATTTTGCTTCCTTAGATAAGGTAAAGGAAGTGGAGGAATTCTTTGAAGCTCATCCCAACTCCGCCATAACTAGAACCCTGAAGCAGAGCATTGAGCGGGTAAAGATCAACGCCAAATGGGTTGAGAGCATCCAGGGTGAGAAGAATCTTGCCGATGCTGTGACGGAGTTGGCATACAGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

885

Amino Acids

99.28

Weight (kDa)

5.32

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	17 - 202	8.1e-50	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	238 - 453	7.2e-90	Peptidase family M1 domain
ERAP1_C	PF11838	541 - 858	2.3e-82	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1869
Acc36I	ACCTGC	2 cut(s)	466, 1637
AccBSI	CCGCTC	1 cut(s)	2566
AccI	GTMKAC	2 cut(s)	177, 596
AccII	CGCG	1 cut(s)	672
AclI	AACGTT	1 cut(s)	720
AclWI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	6 cut(s)	38, 95, 330, 1351, 1556, 2507
AcuI	CTGAAG	6 cut(s)	198, 581, 1104, 1470, 2411, 2570
AfaI	GTAC	6 cut(s)	367, 746, 765, 1506, 1899, 1949
AfiI	CCNNNNNNNGG	6 cut(s)	76, 942, 1126, 1242, 1768, 1982
AjiI	CACGTC	1 cut(s)	2385
AjnI	CCWGG	5 cut(s)	428, 1311, 2229, 2420, 2601
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
Alw21I	GWGCWC	2 cut(s)	171, 2409
Alw26I	GTCTC	9 cut(s)	136, 196, 236, 278, 575, 1574, 1795, 2210, 2470
AlwI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
AlwNI	CAGNNNCTG	1 cut(s)	2276
AoxI	GGCC	6 cut(s)	19, 299, 312, 819, 933, 1936
ApeKI	GCWGC	8 cut(s)	887, 890, 1025, 1307, 1682, 1754, 1757, 2138
ApoI	RAATTY	6 cut(s)	38, 95, 330, 1351, 1556, 2507
Asp700I	GAANNNNTTC	3 cut(s)	353, 1236, 2196
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	4 cut(s)	79, 299, 819, 934
AsuC2I	CCSGG	2 cut(s)	303, 1983
AsuHPI	GGTGA	6 cut(s)	395, 1024, 1109, 1340, 1672, 2618
AsuII	TTCGAA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	171, 1107
BbsI	GAAGAC	2 cut(s)	569, 2243
Bbv12I	GWGCWC	2 cut(s)	171, 2409
BbvI	GCAGC	8 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150
BccI	CCATC	7 cut(s)	122, 251, 485, 508, 545, 650, 1094
BceAI	ACGGC	2 cut(s)	158, 1785
BciT130I	CCWGG	5 cut(s)	430, 1313, 2231, 2422, 2603
BcnI	CCSGG	2 cut(s)	303, 1983
BcoDI	GTCTC	9 cut(s)	136, 196, 236, 278, 575, 1574, 1795, 2210, 2470
BfaI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
BfmI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
BfuAI	ACCTGC	2 cut(s)	466, 1637
BglII	AGATCT	1 cut(s)	1297
Bme1390I	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	2385
BmgT120I	GGNCC	4 cut(s)	79, 299, 819, 934
BmiI	GGNNCC	2 cut(s)	106, 820
BmrFI	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
BmrI	ACTGGG	5 cut(s)	306, 403, 1373, 1467, 2410
BmuI	ACTGGG	5 cut(s)	306, 403, 1373, 1467, 2410
BpiI	GAAGAC	2 cut(s)	569, 2243
BplI	GAGNNNNNCTC	2 cut(s)	2396, 2428
BpmI	CTGGAG	2 cut(s)	1334, 1928
Bpu10I	CCTNAGC	1 cut(s)	1902
Bpu14I	TTCGAA	1 cut(s)	249
BpuMI	CCSGG	2 cut(s)	303, 1983
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 942, 1126, 1242, 1768, 1982
Bse118I	RCCGGY	2 cut(s)	101, 529
Bse1I	ACTGG	9 cut(s)	301, 409, 940, 1254, 1379, 1462, 1588, 1945, 2405
Bse3DI	GCAATG	3 cut(s)	1469, 1793, 2010
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	5 cut(s)	430, 1313, 2231, 2422, 2603
BseDI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BseGI	GGATG	9 cut(s)	496, 556, 1105, 1162, 1212, 1753, 2338, 2521, 2598
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	6 cut(s)	76, 942, 1126, 1242, 1768, 1982
BseMI	GCAATG	3 cut(s)	1469, 1793, 2010
BseMII	CTCAG	4 cut(s)	231, 1076, 1584, 1893
BseNI	ACTGG	9 cut(s)	301, 409, 940, 1254, 1379, 1462, 1588, 1945, 2405
BseRI	GAGGAG	1 cut(s)	2028
BseXI	GCAGC	8 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	6 cut(s)	21, 301, 314, 821, 935, 1938
BsiHKAI	GWGCWC	2 cut(s)	171, 2409
BsiSI	CCGG	5 cut(s)	77, 102, 302, 530, 1982
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	6 cut(s)	76, 942, 1126, 1242, 1768, 1982
BsmAI	GTCTC	9 cut(s)	136, 196, 236, 278, 575, 1574, 1795, 2210, 2470
BsmBI	CGTCTC	3 cut(s)	136, 196, 2470
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	6 cut(s)	21, 301, 314, 821, 935, 1938
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	171, 1107, 2409
Bsp1407I	TGTACA	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	822
BspANI	GGCC	6 cut(s)	21, 301, 314, 821, 935, 1938
BspCNI	CTCAG	4 cut(s)	232, 1075, 1583, 1894
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	106, 820
BspMAI	CTGCAG	2 cut(s)	889, 1957
BspMI	ACCTGC	2 cut(s)	466, 1637
BspPI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
BspT104I	TTCGAA	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	2566
BsrDI	GCAATG	3 cut(s)	1469, 1793, 2010
BsrFI	RCCGGY	2 cut(s)	101, 529
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	9 cut(s)	301, 409, 940, 1254, 1379, 1462, 1588, 1945, 2405
BssAI	RCCGGY	2 cut(s)	101, 529
BssECI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BssT1I	CCWWGG	2 cut(s)	700, 822
Bst2UI	CCWGG	5 cut(s)	430, 1313, 2231, 2422, 2603
Bst4CI	ACNGT	7 cut(s)	190, 568, 851, 916, 1840, 1861, 2464
Bst6I	CTCTTC	2 cut(s)	217, 2202
BstAUI	TGTACA	1 cut(s)	744
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	91, 171, 1272, 1774, 1778
BstDSI	CCRYGG	1 cut(s)	822
BstEII	GGTNACC	1 cut(s)	1373
BstENI	CCTNNNNNAGG	1 cut(s)	1240
BstF5I	GGATG	9 cut(s)	496, 556, 1105, 1162, 1212, 1753, 2338, 2521, 2598
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	672
BstMAI	GTCTC	9 cut(s)	136, 196, 236, 278, 575, 1574, 1795, 2210, 2470
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
BstNI	CCWGG	5 cut(s)	430, 1313, 2231, 2422, 2603
BstNSI	RCATGY	3 cut(s)	529, 1274, 1596
BstPI	GGTNACC	1 cut(s)	1373
BstSCI	CCNGG	7 cut(s)	301, 428, 1311, 1981, 2229, 2420, 2601
BstSFI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	8 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150
BstV2I	GAAGAC	2 cut(s)	569, 2243
BstX2I	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
BsuRI	GGCC	6 cut(s)	21, 301, 314, 821, 935, 1938
BtgI	CCRYGG	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	2385
BtsCI	GGATG	9 cut(s)	496, 556, 1105, 1162, 1212, 1753, 2338, 2521, 2598
BtsIMutI	CAGTG	5 cut(s)	947, 1247, 1455, 1845, 2461
BveI	ACCTGC	2 cut(s)	466, 1637
Cac8I	GCNNGC	5 cut(s)	91, 171, 1272, 1774, 1778
CaiI	CAGNNNCTG	1 cut(s)	2276
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	2 cut(s)	101, 529
Cfr13I	GGNCC	4 cut(s)	79, 299, 819, 934
Csp6I	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviAII	CATG	8 cut(s)	526, 823, 926, 1142, 1271, 1356, 1593, 2048
CviQI	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	217, 2202
EarI	CTCTTC	2 cut(s)	217, 2202
EciI	GGCGGA	2 cut(s)	20, 2521
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	700, 822
Eco24I	GRGCYC	2 cut(s)	171, 1107
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	6 cut(s)	198, 581, 1104, 1470, 2411, 2570
Eco91I	GGTNACC	1 cut(s)	1373
EcoICRI	GAGCTC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	1240
EcoO65I	GGTNACC	1 cut(s)	1373
EcoRI	GAATTC	2 cut(s)	1351, 2507
EcoRII	CCWGG	5 cut(s)	428, 1311, 2229, 2420, 2601
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	700, 822
EcoT38I	GRGCYC	2 cut(s)	171, 1107
ErhI	CCWWGG	2 cut(s)	700, 822
Esp3I	CGTCTC	3 cut(s)	136, 196, 2470
FaeI	CATG	8 cut(s)	529, 826, 929, 1145, 1274, 1359, 1596, 2051
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 1700, 1732
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	8 cut(s)	525, 822, 925, 1141, 1270, 1355, 1592, 2047
FauI	CCCGC	3 cut(s)	35, 2249, 2559
FauNDI	CATATG	3 cut(s)	370, 1498, 2143
FblI	GTMKAC	2 cut(s)	177, 596
FokI	GGATG	9 cut(s)	503, 563, 1112, 1169, 1219, 1760, 2345, 2508, 2585
FriOI	GRGCYC	2 cut(s)	171, 1107
FspBI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
GlaI	GCGC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	1334, 1928
HaeIII	GGCC	6 cut(s)	21, 301, 314, 821, 935, 1938
HapII	CCGG	5 cut(s)	77, 102, 302, 530, 1982
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	8 cut(s)	529, 826, 929, 1145, 1274, 1359, 1596, 2051
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	2 cut(s)	178, 2310
HindII	GTYRAC	2 cut(s)	178, 2310
HindIII	AAGCTT	1 cut(s)	1961
HinfI	GANTC	6 cut(s)	660, 1060, 1076, 1112, 2192, 2614
HpaII	CCGG	5 cut(s)	77, 102, 302, 530, 1982
HphI	GGTGA	6 cut(s)	395, 1024, 1109, 1340, 1672, 2618
Hpy166II	GTNNAC	8 cut(s)	178, 597, 975, 1331, 1339, 2209, 2255, 2310
Hpy8I	GTNNAC	8 cut(s)	178, 597, 975, 1331, 1339, 2209, 2255, 2310
Hpy99I	CGWCG	3 cut(s)	65, 113, 179
HpyCH4III	ACNGT	7 cut(s)	190, 568, 851, 916, 1840, 1861, 2464
HpyCH4IV	ACGT	4 cut(s)	63, 473, 720, 2384
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
HpySE526I	ACGT	4 cut(s)	63, 473, 720, 2384
Hsp92II	CATG	8 cut(s)	529, 826, 929, 1145, 1274, 1359, 1596, 2051
HspAI	GCGC	1 cut(s)	670
LmnI	GCTCC	2 cut(s)	7, 2404
Lsp1109I	GCAGC	8 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150
MaeI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
MaeII	ACGT	4 cut(s)	63, 473, 720, 2384
MaeIII	GTNAC	7 cut(s)	403, 841, 958, 1245, 1373, 2164, 2629
MbiI	CCGCTC	1 cut(s)	2566
MfeI	CAATTG	1 cut(s)	2058
MflI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
MhlI	GDGCHC	3 cut(s)	171, 1107, 2409
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	669, 1054
MmeI	TCCRAC	4 cut(s)	317, 546, 601, 1601
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	3 cut(s)	1691, 1920, 2082
MslI	CAYNNNNRTG	4 cut(s)	381, 982, 1146, 1998
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	2 cut(s)	890, 1757
MspI	CCGG	5 cut(s)	77, 102, 302, 530, 1982
MspR9I	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
MunI	CAATTG	1 cut(s)	2058
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	5 cut(s)	430, 1313, 2231, 2422, 2603
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
NciI	CCSGG	2 cut(s)	303, 1983
NcoI	CCATGG	1 cut(s)	822
NdeI	CATATG	3 cut(s)	370, 1498, 2143
NlaIII	CATG	8 cut(s)	529, 826, 929, 1145, 1274, 1359, 1596, 2051
NlaIV	GGNNCC	2 cut(s)	106, 820
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	1245, 2629
NspI	RCATGY	3 cut(s)	529, 1274, 1596
NspV	TTCGAA	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	1274
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
PfeI	GAWTC	4 cut(s)	1076, 1112, 2192, 2614
PleI	GAGTC	2 cut(s)	668, 1054
PpsI	GAGTC	2 cut(s)	668, 1054
PsiI	TTATAA	1 cut(s)	1869
Psp124BI	GAGCTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	720
Psp6I	CCWGG	5 cut(s)	428, 1311, 2229, 2420, 2601
PspEI	GGTNACC	1 cut(s)	1373
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	5 cut(s)	428, 1311, 2229, 2420, 2601
PspN4I	GGNNCC	2 cut(s)	106, 820
PspPI	GGNCC	4 cut(s)	79, 299, 819, 934
PstI	CTGCAG	2 cut(s)	889, 1957
PstNI	CAGNNNCTG	1 cut(s)	2276
PsuI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
PvuII	CAGCTG	2 cut(s)	890, 1757
RsaI	GTAC	6 cut(s)	367, 746, 765, 1506, 1899, 1949
RsaNI	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
RseI	CAYNNNNRTG	4 cut(s)	381, 982, 1146, 1998
SacI	GAGCTC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	1691, 1920, 2082
Sau96I	GGNCC	4 cut(s)	79, 299, 819, 934
SchI	GAGTC	2 cut(s)	669, 1054
ScrFI	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
SduI	GDGCHC	3 cut(s)	171, 1107, 2409
SfcI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	4 cut(s)	381, 982, 1146, 1998
SphI	GCATGC	1 cut(s)	1274
SspI	AATATT	1 cut(s)	1164
SspMI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	7 cut(s)	301, 428, 1311, 1981, 2229, 2420, 2601
StyI	CCWWGG	2 cut(s)	700, 822
TaaI	ACNGT	7 cut(s)	190, 568, 851, 916, 1840, 1861, 2464
TaiI	ACGT	4 cut(s)	66, 476, 723, 2387
TaqI	TCGA	6 cut(s)	117, 123, 177, 249, 1107, 1125
TatI	WGTACW	2 cut(s)	365, 744
TauI	GCSGC	3 cut(s)	47, 89, 164
TfiI	GAWTC	4 cut(s)	1076, 1112, 2192, 2614
Tru1I	TTAA	3 cut(s)	1691, 1920, 2082
Tru9I	TTAA	3 cut(s)	1691, 1920, 2082
TscAI	CASTG	5 cut(s)	947, 1254, 1462, 1845, 2461
TseFI	GTSAC	2 cut(s)	1245, 2629
TseI	GCWGC	8 cut(s)	887, 890, 1025, 1307, 1682, 1754, 1757, 2138
Tsp45I	GTSAC	2 cut(s)	1245, 2629
TspGWI	ACGGA	3 cut(s)	97, 1378, 2648
TspRI	CASTG	5 cut(s)	947, 1254, 1462, 1845, 2461
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	1240
XapI	RAATTY	6 cut(s)	38, 95, 330, 1351, 1556, 2507
XceI	RCATGY	3 cut(s)	529, 1274, 1596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	787, 944
XmiI	GTMKAC	2 cut(s)	177, 596
XmnI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
XspI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.