Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

13608604 .. 13610474

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G149400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAGGGGGAAAGTGGAGCTGAAGAGAATAGAAAACCCAACAAGCAGGCAGGTGACCTTCTCGAAACGACGAAATGGGCTCCTGAAGAAGGCTTTTGAGCTCTCCGTCTTATGTGATGCTGAAGTTGCAATCATCATCTTGTCTCCCTCTGGCAAGATCTACCAATTTGCAAGCCATGACATAAACAGGACCATTGCCATGTATAGAAATCAAGTGGGTCTGCCTGAATCAAACAACTCAAGCTTCAGACGGGACAGAACCATGGAGTTTAGGAGGAATAATGAAAATGAAGAGCTAAGGAGATCAATAGCCAACTTGGAAATGAGGCTGAAGAACTTGGCTGGGGAAGAGCTTGATATCCTAGGCATGCAAGAGCTAAAGCAGCTCGAGCGGCAGTTGAAAACTGGGGTTGAACGCATCCGCTCTCAAATAGGACGGGTCATTTCTGAGAACATCAGCTCGCTGAAAAGAAAGCATAAAGCAATGCAAGAAGAAAACAGTCGTCTGCAAAAAAGATTCCATGAGCTTCATCATTATGCTGATCACGCAAGCTCGAGCATTTTGGGACCAAATGCATACATGCAATTCTTTCCAAGTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

203

Amino Acids

23.52

Weight (kDa)

9.94

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	2 cut(s)	394, 426
AciI	CCGC	2 cut(s)	394, 424
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	5 cut(s)	44, 107, 144, 232, 353
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	403, 416
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	2 cut(s)	389, 556
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	602
AspA2I	CCTAGG	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	192, 569
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	389, 556
AvaII	GGWCC	2 cut(s)	192, 569
AvrII	CCTAGG	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	84, 105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	2 cut(s)	386, 395
BlnI	CCTAGG	1 cut(s)	364
BlsI	GCNGC	2 cut(s)	387, 396
Bme18I	GGWCC	2 cut(s)	192, 569
BmeT110I	CYCGRG	2 cut(s)	389, 556
BmgT120I	GGNCC	2 cut(s)	192, 569
BmiI	GGNNCC	2 cut(s)	83, 570
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	109, 429
BmuI	ACTGGG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	264, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	2 cut(s)	195, 492
BseDI	CCNNGG	2 cut(s)	264, 364
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	195, 492
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	389, 556
BslFI	GGGAC	2 cut(s)	269, 582
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	269, 582
BsoBI	CYCGRG	2 cut(s)	389, 556
Bsp1286I	GDGCHC	2 cut(s)	84, 105
Bsp143I	GATC	3 cut(s)	159, 305, 544
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	394, 424
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	83, 570
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	2 cut(s)	288, 345
BsrBI	CCGCTC	2 cut(s)	394, 426
BsrDI	GCAATG	2 cut(s)	195, 492
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	264, 364
BssMI	GATC	3 cut(s)	159, 305, 544
BssT1I	CCWWGG	2 cut(s)	264, 364
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	3 cut(s)	20, 288, 345
BstC8I	GCNNGC	5 cut(s)	50, 175, 371, 464, 553
BstDEI	CTNAG	2 cut(s)	299, 450
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	420
BstKTI	GATC	3 cut(s)	162, 308, 547
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	159, 305, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 385, 391, 394, 548
BstNSI	RCATGY	2 cut(s)	373, 586
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	50, 175, 371, 464, 553
Cfr13I	GGNCC	2 cut(s)	192, 569
CviAII	CATG	6 cut(s)	179, 202, 265, 370, 524, 583
DdeI	CTNAG	2 cut(s)	299, 450
DpnI	GATC	3 cut(s)	161, 307, 546
DpnII	GATC	3 cut(s)	159, 305, 544
Eam1104I	CTCTTC	3 cut(s)	20, 288, 345
EarI	CTCTTC	3 cut(s)	20, 288, 345
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	264, 364
Eco24I	GRGCYC	2 cut(s)	84, 105
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	192, 569
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	5 cut(s)	44, 107, 144, 232, 353
Eco88I	CYCGRG	2 cut(s)	389, 556
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	264, 364
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	2 cut(s)	84, 105
ErhI	CCWWGG	2 cut(s)	264, 364
FaeI	CATG	6 cut(s)	182, 205, 268, 373, 527, 586
FaqI	GGGAC	2 cut(s)	269, 582
FatI	CATG	6 cut(s)	178, 201, 264, 369, 523, 582
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	386, 395
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	2 cut(s)	84, 105
Fsp4HI	GCNGC	2 cut(s)	386, 395
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	386, 395
GsaI	CCCAGC	1 cut(s)	348
Hin1II	CATG	6 cut(s)	182, 205, 268, 373, 527, 586
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	2 cut(s)	230, 519
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	251, 451
Hpy188III	TCNNGA	2 cut(s)	64, 85
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	7 cut(s)	131, 173, 373, 490, 511, 578, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 385, 391, 394, 548
HpyF3I	CTNAG	2 cut(s)	299, 450
Hsp92II	CATG	6 cut(s)	182, 205, 268, 373, 527, 586
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	159, 305, 544
LguI	GCTCTTC	2 cut(s)	288, 345
LmnI	GCTCC	2 cut(s)	19, 87
LpnPI	CCDG	8 cut(s)	34, 38, 98, 138, 175, 240, 330, 393
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	109, 429
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	161, 307, 546
MbiI	CCGCTC	2 cut(s)	394, 426
MboI	GATC	3 cut(s)	159, 305, 544
MboII	GAAGA	6 cut(s)	37, 100, 305, 346, 362, 506
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	84, 105
MluCI	AATT	3 cut(s)	167, 587, 602
MnlI	CCTC	3 cut(s)	160, 270, 321
Mph1103I	ATGCAT	1 cut(s)	580
MslI	CAYNNNNRTG	2 cut(s)	200, 537
MwoI	GCNNNNNNNGC	5 cut(s)	128, 385, 391, 394, 548
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	159, 305, 544
NlaIII	CATG	6 cut(s)	182, 205, 268, 373, 527, 586
NlaIV	GGNNCC	2 cut(s)	83, 570
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	2 cut(s)	373, 586
PaeI	GCATGC	1 cut(s)	373
PaeR7I	CTCGAG	2 cut(s)	389, 556
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	2 cut(s)	288, 345
PfeI	GAWTC	2 cut(s)	230, 519
PkrI	GCNGC	2 cut(s)	387, 396
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	83, 570
PspPI	GGNCC	2 cut(s)	192, 569
PspXI	VCTCGAGB	2 cut(s)	389, 556
PsuI	RGATCY	1 cut(s)	159
RseI	CAYNNNNRTG	2 cut(s)	200, 537
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	2 cut(s)	288, 345
SatI	GCNGC	2 cut(s)	386, 395
Sau3AI	GATC	3 cut(s)	159, 305, 544
Sau96I	GGNCC	2 cut(s)	192, 569
SduI	GDGCHC	2 cut(s)	84, 105
SfaNI	GCATC	2 cut(s)	109, 429
Sfr274I	CTCGAG	2 cut(s)	389, 556
SinI	GGWCC	2 cut(s)	192, 569
SlaI	CTCGAG	2 cut(s)	389, 556
SmiMI	CAYNNNNRTG	2 cut(s)	200, 537
SmlI	CTYRAG	3 cut(s)	241, 389, 556
SmoI	CTYRAG	3 cut(s)	241, 389, 556
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	167, 587, 602
SsiI	CCGC	2 cut(s)	394, 424
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	264, 364
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	65, 390, 557
TasI	AATT	3 cut(s)	167, 587, 602
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	230, 519
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	300, 306, 521
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	192, 569
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	2 cut(s)	373, 586
XhoI	CTCGAG	2 cut(s)	389, 556
XmaJI	CCTAGG	1 cut(s)	364
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.