Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

15948253 .. 15952505

Gene Structure 4253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12920.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATTGCAAAAGGAGAATTTGGTAGTGACGTCTTGTCAAAAGTCCAAATATTATTAACCAGCACCTGCATGATTACAGTGGACAAATATAATAAGGTATTAGTAAATATGGGGAGGGGGAAAGTGGAGCTGAAGAGAATCGAGAACCCAACAAGCAGACAGGTCACCTTCTCAAAACGCAGAAATGGACTTCTGAAGAAGGCTTTTGAGCTCTCTGTCCTCTGCGATGCTGAAGTTGCCCTCATCATCTTCTCTCCATCTGGCAAGTCCTACCAATTTGCAAGCCACGACATAACTAGGACCATTTCCATGTATAAAAGGGAAGTAGGGTTGCCTGAATCCAACAACTCAAGCTTCGGAAGGGCCAGAACAATGGAGTATTGGAGGAATGAAAATGAAGAGTTAACAAAATCAATAGGGAAGTTGGAAATGAGGCTGAGGAACTTGGCTGGGGAAGAGCTATCAACGCTTGGCGTGCAAGAGCTAAAGCAGCTGGAAAGACAGTTAAAAACTGGGGTTGAACGCATCCGCTCTAAAATGAGACGGATCATTTCGGAGAATGTTAGCTTGCTGAAAAGAAAGCATAAAGCATCGCAAGAAGAAAACACGCGTCTGCTAAAAAGATTGCACGAGCTTAATTTTGCTGATGCCACCTGCTCGACATCTTCTGTGGGAGCAAATGCACGCATTAGTGCATTTCCAAGTGAACTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

239

Amino Acids

26.99

Weight (kDa)

9.87

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	74, 662
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	2 cut(s)	74, 662
AccBSI	CCGCTC	1 cut(s)	531
AccII	CGCG	1 cut(s)	610
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	3 cut(s)	152, 215, 252
AcyI	GRCGYC	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	1 cut(s)	521
AhdI	GACNNNNNGTC	1 cut(s)	34
AluBI	AGCT	8 cut(s)	130, 211, 354, 460, 484, 493, 567, 634
AluI	AGCT	8 cut(s)	130, 211, 354, 460, 484, 493, 567, 634
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	300, 363
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	297
BfuAI	ACCTGC	2 cut(s)	74, 662
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	300
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	300, 363
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	4 cut(s)	217, 534, 599, 637
BmuI	ACTGGG	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	535
BsmBI	CGTCTC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	546
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	610
BspMI	ACCTGC	2 cut(s)	74, 662
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	546
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	629
Bst4CI	ACNGT	2 cut(s)	79, 504
Bst6I	CTCTTC	3 cut(s)	128, 393, 450
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	283, 476, 569, 685
BstDEI	CTNAG	1 cut(s)	437
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	610
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 466, 475, 490
BstPI	GGTNACC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	502
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	365
BtgZI	GCGATG	2 cut(s)	240, 576
BtsCI	GGATG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	2 cut(s)	74, 662
Cac8I	GCNNGC	4 cut(s)	283, 476, 569, 685
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	300, 363
CseI	GACGC	1 cut(s)	599
CviAII	CATG	2 cut(s)	70, 310
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DriI	GACNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	128, 393, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	3 cut(s)	128, 393, 450
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	152, 215, 252
Eco91I	GGTNACC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	2 cut(s)	73, 313
FaiI	YATR	7 cut(s)	71, 90, 110, 293, 311, 315, 585
FatI	CATG	2 cut(s)	69, 309
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	1 cut(s)	491
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	365
HgaI	GACGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	73, 313
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	138, 338
HpaI	GTTAAC	1 cut(s)	405
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	82, 405, 707
Hpy188I	TCNGA	3 cut(s)	195, 359, 556
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	82, 405, 707
HpyAV	CCTTC	3 cut(s)	178, 193, 354
HpyCH4III	ACNGT	2 cut(s)	79, 504
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	7 cut(s)	8, 69, 281, 478, 628, 683, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 466, 475, 490
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	73, 313
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	127, 674
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	4 cut(s)	217, 534, 599, 637
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	26, 163
MalI	GATC	1 cut(s)	548
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	1 cut(s)	546
MboII	GAAGA	7 cut(s)	145, 208, 241, 410, 467, 611, 657
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	17, 275, 637, 711
MluI	ACGCGT	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	366, 405
MnlI	CCTC	6 cut(s)	108, 230, 251, 378, 426, 432
MseI	TTAA	4 cut(s)	56, 404, 506, 636
MslI	CAYNNNNRTG	2 cut(s)	68, 308
MspA1I	CMGCKG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	4 cut(s)	236, 466, 475, 490
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	2 cut(s)	73, 313
NmuCI	GTSAC	2 cut(s)	26, 163
PaqCI	CACCTGC	2 cut(s)	74, 662
PciSI	GCTCTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	138, 338
PkrI	GCNGC	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	449
PspPI	GGNCC	2 cut(s)	300, 363
PstNI	CAGNNNCTG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	493
RseI	CAYNNNNRTG	2 cut(s)	68, 308
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	56, 404, 506, 636
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	2 cut(s)	300, 363
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	217, 534, 599, 637
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	68, 308
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	4 cut(s)	17, 275, 637, 711
SsiI	CCGC	1 cut(s)	529
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	79, 504
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	141, 659
TasI	AATT	4 cut(s)	17, 275, 637, 711
TfiI	GAWTC	2 cut(s)	138, 338
Tru1I	TTAA	4 cut(s)	56, 404, 506, 636
Tru9I	TTAA	4 cut(s)	56, 404, 506, 636
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	26, 163
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	26, 163
TspDTI	ATGAA	2 cut(s)	405, 411
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	1 cut(s)	297
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.