Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

9348366 .. 9349909

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTATAGAAGTGAAATAGGACTCCCTCAATCAAGTAACCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTACGGAGGATTAATGAAACTGAAGAGTTAAGAAGGTCAATACAGAAATTGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCATGCTGAAAAAGAAGCATAAAGCACAGCAAGAGGAAAATAGGCTTCTGCAGAAAAGATTGCACGAGCTTGATCAATATGGTAATGCAAGCTGCTCGATAACATTGGGAGCAAGTGCACGCAATGTGATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

136

Amino Acids

15.7

Weight (kDa)

10.08

Isoelectric Point (pI)

66.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	29 - 108	5.2e-16	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	226, 262
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	184, 218
AluBI	AGCT	5 cut(s)	146, 157, 190, 331, 354
AluI	AGCT	5 cut(s)	146, 157, 190, 331, 354
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	251
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	354
AseI	ATTAAT	2 cut(s)	84, 393
BaeGI	GKGCMC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	191, 409
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	341
BseYI	CCCAGC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	243, 334
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	226, 262
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	243, 334
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	5 cut(s)	46, 173, 266, 352, 382
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	246, 337
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	243, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 172
BstNSI	RCATGY	3 cut(s)	48, 175, 268
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	5 cut(s)	46, 173, 266, 352, 382
CviAII	CATG	4 cut(s)	45, 67, 172, 265
CviJI	RGCY	7 cut(s)	133, 146, 157, 190, 307, 331, 354
CviKI_1	RGCY	7 cut(s)	133, 146, 157, 190, 307, 331, 354
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	245, 336
DpnII	GATC	2 cut(s)	243, 334
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	48, 70, 175, 268
FaiI	YATR	7 cut(s)	6, 46, 68, 173, 266, 282, 342
FatI	CATG	4 cut(s)	44, 66, 171, 264
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	2 cut(s)	191, 409
GluI	GCNGC	1 cut(s)	355
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	168
Hin1II	CATG	4 cut(s)	48, 70, 175, 268
HinfI	GANTC	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	232, 253, 405
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	7 cut(s)	44, 175, 313, 325, 350, 380, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 172
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	48, 70, 175, 268
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	243, 334
LmnI	GCTCC	2 cut(s)	149, 371
LpnPI	CCDG	4 cut(s)	54, 132, 152, 195
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	191, 409
MaeIII	GTNAC	2 cut(s)	35, 72
MalI	GATC	2 cut(s)	245, 336
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	2 cut(s)	243, 334
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	36, 72, 123, 289
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	4 cut(s)	84, 101, 203, 393
MwoI	GCNNNNNNNGC	2 cut(s)	163, 172
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	243, 334
NlaIII	CATG	4 cut(s)	48, 70, 175, 268
NlaIV	GGNNCC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	3 cut(s)	48, 175, 268
PaeI	GCATGC	3 cut(s)	48, 175, 268
PkrI	GCNGC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	2 cut(s)	84, 393
PspFI	CCCAGC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	84, 101, 203, 393
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	2 cut(s)	243, 334
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	7 cut(s)	110, 148, 159, 192, 333, 356, 410
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	3 cut(s)	48, 175, 268
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	226, 262
SspMI	CTAG	2 cut(s)	191, 409
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	359
TasI	AATT	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	84, 101, 203, 393
Tru9I	TTAA	4 cut(s)	84, 101, 203, 393
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	2 cut(s)	91, 256
VneI	GTGCAC	1 cut(s)	378
VspI	ATTAAT	2 cut(s)	84, 393
XceI	RCATGY	3 cut(s)	48, 175, 268
XspI	CTAG	2 cut(s)	191, 409
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.