Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Reverse (-)

28419344 .. 28421787

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1140100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACAAATATAATAAGGTATTAGTAAAAATGGGGAGGGGGAAAGTGGAGCTGAAGAGAATAGATAACCCAACAAGCAGACATGTGACCTTCTCCAAACGAAGAAATGGACTGCTGAAGAAGGCTTTTGAGCTCTCTATCCTCTGCGATGCTGAAGTTGCCGTCATCGTCTTCTCTCACTCTGGCAAGGCCTACGAATTTGCAAGCCACGACATAAATAGGACCATTGCCATGTATAGACGTGAAGTAGGGTTGCCTGAACCAAACAACTCAACCTTCAGAAGGGCCAGAACCATGGAGTATTGGAGGAATGAAACCGAAGAGTTAAGAAGATCAATACAAAACCTCGAAATGCGGCTGAAGCACTTGGCTGGAGAGGAGCTATCAACGCTTGGTATGCAAGAATTAAAGCAATTGGAAAGACAGTTAAAAACTGGGGTTGAACGCATCCGCTCTAAATCGATCATTTCGGAGAACGTCAACTTGCTGAAAAGAAAGCATAAAGAATTGCGAGAAGAAAACAAGCGTCTGCAAAAAAGAGTTAAGTTGCAGGAGTTTCATTTTGCTGATGTCACCTCGTCGACCTCGACAACTACTTTGGGAGCAAATGCATGCATGAGTGCATTTCCAAGGGTTATGTTCTCGCAGCAACACCAGCTGCTGCCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

224

Amino Acids

26.02

Weight (kDa)

10.1

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	20 - 67	9.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	97 - 181	1.4e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	581
AciI	CCGC	2 cut(s)	355, 451
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	5 cut(s)	74, 137, 174, 262, 380
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	242
AluBI	AGCT	4 cut(s)	52, 133, 382, 658
AluI	AGCT	4 cut(s)	52, 133, 382, 658
Alw21I	GWGCWC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	2 cut(s)	189, 285
ApeKI	GCWGC	3 cut(s)	646, 658, 661
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspS9I	GGNCC	2 cut(s)	222, 285
AsuHPI	GGTGA	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	645, 648, 658
BceAI	ACGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	356, 647, 659, 662
BlsI	GCNGC	4 cut(s)	357, 648, 660, 663
Bme18I	GGWCC	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	222, 285
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	139, 456
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	294, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	294, 629
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	645, 648, 658
BshFI	GGCC	2 cut(s)	191, 287
BshVI	ATCGAT	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	2 cut(s)	191, 287
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	332, 462
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	355, 451
BspANI	GGCC	2 cut(s)	191, 287
BspDI	ATCGAT	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	294, 629
BssMI	GATC	2 cut(s)	332, 462
BssT1I	CCWWGG	2 cut(s)	294, 629
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	2 cut(s)	50, 315
BstC8I	GCNNGC	2 cut(s)	205, 613
BstDSI	CCRYGG	1 cut(s)	294
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	447
BstKTI	GATC	2 cut(s)	335, 465
BstMBI	GATC	2 cut(s)	332, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 361, 388, 397, 655
BstNSI	RCATGY	2 cut(s)	86, 615
BstV1I	GCAGC	3 cut(s)	645, 648, 658
BstV2I	GAAGAC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	191, 287
BsuTUI	ATCGAT	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	205, 613
CaiI	CAGNNNCTG	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	222, 285
ClaI	ATCGAT	1 cut(s)	461
CseI	GACGC	1 cut(s)	515
CviAII	CATG	5 cut(s)	83, 232, 295, 612, 616
DpnI	GATC	2 cut(s)	334, 464
DpnII	GATC	2 cut(s)	332, 462
Eam1104I	CTCTTC	2 cut(s)	50, 315
EarI	CTCTTC	2 cut(s)	50, 315
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	294, 629
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	5 cut(s)	74, 137, 174, 262, 380
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	294, 629
EcoT22I	ATGCAT	2 cut(s)	613, 617
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	294, 629
FaeI	CATG	5 cut(s)	86, 235, 298, 615, 619
FatI	CATG	5 cut(s)	82, 231, 294, 611, 615
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	4 cut(s)	356, 647, 659, 662
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	356, 647, 659, 662
GluI	GCNGC	4 cut(s)	356, 647, 659, 662
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	191, 287
HgaI	GACGC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	86, 235, 298, 615, 619
HincII	GTYRAC	2 cut(s)	481, 582
HindII	GTYRAC	2 cut(s)	481, 582
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	481, 582
Hpy188I	TCNGA	2 cut(s)	281, 472
Hpy8I	GTNNAC	2 cut(s)	481, 582
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	100, 115, 276, 286
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	2 cut(s)	241, 477
HpyCH4V	TGCA	7 cut(s)	203, 400, 532, 550, 611, 615, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 361, 388, 397, 655
HpySE526I	ACGT	2 cut(s)	241, 477
Hsp92II	CATG	5 cut(s)	86, 235, 298, 615, 619
Kzo9I	GATC	2 cut(s)	332, 462
LmnI	GCTCC	3 cut(s)	49, 379, 602
LpnPI	CCDG	7 cut(s)	168, 270, 301, 357, 420, 536, 668
Lsp1109I	GCAGC	3 cut(s)	645, 648, 658
LweI	GCATC	2 cut(s)	139, 456
MaeII	ACGT	2 cut(s)	241, 477
MaeIII	GTNAC	2 cut(s)	85, 571
MalI	GATC	2 cut(s)	334, 464
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	2 cut(s)	332, 462
MboII	GAAGA	7 cut(s)	67, 114, 130, 163, 332, 342, 527
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	5 cut(s)	197, 404, 413, 506, 667
MnlI	CCTC	7 cut(s)	30, 152, 300, 356, 370, 586, 595
Mph1103I	ATGCAT	2 cut(s)	613, 617
MseI	TTAA	5 cut(s)	326, 407, 428, 543, 670
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	413
MwoI	GCNNNNNNNGC	5 cut(s)	158, 361, 388, 397, 655
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	332, 462
NlaIII	CATG	5 cut(s)	86, 235, 298, 615, 619
NmuCI	GTSAC	2 cut(s)	85, 571
NsiI	ATGCAT	2 cut(s)	613, 617
NspI	RCATGY	2 cut(s)	86, 615
PaeI	GCATGC	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	191
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PkrI	GCNGC	4 cut(s)	357, 648, 660, 663
PscI	ACATGT	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	222, 285
PstNI	CAGNNNCTG	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	580
SaqAI	TTAA	5 cut(s)	326, 407, 428, 543, 670
SatI	GCNGC	4 cut(s)	356, 647, 659, 662
Sau3AI	GATC	2 cut(s)	332, 462
Sau96I	GGNCC	2 cut(s)	222, 285
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	139, 456
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	615
Sse9I	AATT	5 cut(s)	197, 404, 413, 506, 667
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	2 cut(s)	355, 451
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	294, 629
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	2 cut(s)	244, 480
TaqI	TCGA	4 cut(s)	348, 461, 581, 587
TasI	AATT	5 cut(s)	197, 404, 413, 506, 667
TauI	GCSGC	1 cut(s)	358
Tru1I	TTAA	5 cut(s)	326, 407, 428, 543, 670
Tru9I	TTAA	5 cut(s)	326, 407, 428, 543, 670
TseFI	GTSAC	2 cut(s)	85, 571
TseI	GCWGC	3 cut(s)	646, 658, 661
Tsp45I	GTSAC	2 cut(s)	85, 571
TspDTI	ATGAA	2 cut(s)	327, 548
VpaK11BI	GGWCC	1 cut(s)	222
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	2 cut(s)	86, 615
XmiI	GTMKAC	1 cut(s)	581
Zsp2I	ATGCAT	2 cut(s)	613, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.