Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Forward (+)

58531137 .. 58533535

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAGGGGAAAAGTGGAGCTGAAGAGAATAGAGAGTCCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAAGCTTTATCAATATGCAAGCCATGACATAAATAGAACGATTGCAATGTATAGAAGTGAAGTAGGATTCCCTCAATCAAGTAACCCTGCATGCTGTACAAGGATTGGAACCATGGAGTTATGGAGGAATGAAACTGAAGAGTTAAGAAGGTCAATACAGAAATTGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGGATATCCGCTTGCTGAAAAGGAAGCATAAAGCACAGCAAGAGGAAAATAGGCGTCTGCAGAAAAGATTGCACGAGCTTGATCAATATGGTAATGCAAGCAGCTCGATAACATTGGGAGCAACTGCACGCAATCTGATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

202

Amino Acids

23.23

Weight (kDa)

10.09

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 174	2.4e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	2 cut(s)	424, 460
AclWI	GGATC	1 cut(s)	449
AcuI	CTGAAG	3 cut(s)	44, 144, 312
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	2 cut(s)	76, 253
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	382, 416
AluBI	AGCT	8 cut(s)	22, 103, 160, 344, 355, 388, 529, 555
AluI	AGCT	8 cut(s)	22, 103, 160, 344, 355, 388, 529, 555
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	552
AseI	ATTAAT	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	67
BauI	CACGAG	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	564
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	389, 607
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	90, 109, 429
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	81, 420
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	564
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	42, 441, 532
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	424, 460
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	42, 441, 532
BssNI	GRCGYC	1 cut(s)	505
BssSI	CACGAG	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	20, 288
BstACI	GRCGYC	1 cut(s)	505
BstAUI	TGTACA	1 cut(s)	251
BstC8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 371, 464, 550, 580
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 420
BstKTI	GATC	3 cut(s)	45, 444, 535
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	42, 441, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
BstNSI	RCATGY	2 cut(s)	249, 373
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	81, 420
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 371, 464, 550, 580
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	75, 252
CviAII	CATG	4 cut(s)	179, 246, 268, 370
CviQI	GTAC	2 cut(s)	75, 252
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	3 cut(s)	44, 443, 534
DpnII	GATC	3 cut(s)	42, 441, 532
Eam1104I	CTCTTC	2 cut(s)	20, 288
EarI	CTCTTC	2 cut(s)	20, 288
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	44, 144, 312
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	182, 249, 271, 373
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	4 cut(s)	178, 245, 267, 369
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	2 cut(s)	68, 407
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	2 cut(s)	389, 607
GluI	GCNGC	1 cut(s)	553
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
HgaI	GACGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	182, 249, 271, 373
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	37, 222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	42, 430, 451, 588, 603
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	3 cut(s)	70, 85, 297
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	9 cut(s)	173, 200, 245, 373, 511, 523, 548, 578, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
HpyF3I	CTNAG	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	182, 249, 271, 373
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	42, 441, 532
LmnI	GCTCC	3 cut(s)	19, 347, 569
LpnPI	CCDG	8 cut(s)	34, 38, 91, 166, 255, 330, 350, 393
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	3 cut(s)	90, 109, 429
MaeI	CTAG	2 cut(s)	389, 607
MaeIII	GTNAC	2 cut(s)	55, 236
MalI	GATC	3 cut(s)	44, 443, 534
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	3 cut(s)	42, 441, 532
MboII	GAAGA	2 cut(s)	37, 305
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	8 cut(s)	122, 143, 160, 237, 273, 321, 445, 487
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	3 cut(s)	299, 401, 591
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	42, 441, 532
NlaIII	CATG	4 cut(s)	182, 249, 271, 373
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	249, 373
PaeI	GCATGC	2 cut(s)	249, 373
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	591
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	76, 253
RsaNI	GTAC	2 cut(s)	75, 252
SaqAI	TTAA	3 cut(s)	299, 401, 591
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	3 cut(s)	42, 441, 532
SchI	GAGTC	1 cut(s)	46
SfaNI	GCATC	3 cut(s)	90, 109, 429
SfcI	CTRYAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	2 cut(s)	249, 373
Sse9I	AATT	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	424, 460
SspMI	CTAG	2 cut(s)	389, 607
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	557
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	299, 401, 591
Tru9I	TTAA	3 cut(s)	299, 401, 591
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	2 cut(s)	97, 454
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	2 cut(s)	249, 373
XspI	CTAG	2 cut(s)	389, 607
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.