Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011560

Physical Location & Seq

Genomic Coordinates Forward (+)

61608658 .. 61609357

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0500600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGGATCCTTCAGAACAAGAAAACCTCCTCATCTTCTCCTTCCTCAACATCGCCTTGCGCCAATCTCAGAGCTGCTTACCACAACTGCTTCAACAGGTGGTATTCAGAGAAGTTTGTAAAGGGTAATTGGGACAAAGAGGAATGCCTTTCGGAATGGGAGAAATACAAGGCTTGTCTTTCTGAACATTTGGAAGATAAACAACTGAGTCGGTTCTTGGAGGCTGAAGGACCTGTGAGCACCACCACTGCAACCAGAGCCGATGGCGGGCGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

7.66

Isoelectric Point (pI)

78.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0203	PF05254	15 - 75	9.9e-23	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08530 FvH4_5g08530
malus_domestica	MD06G1140100.v1.1 MD14G1155500.v1.1
prunus_persica	Prupe.5G149400_v2.0.a1
pyrus_communis	pycom14g12920
rosa_chinensis	RchiOBHm_Chr7g0189871
rosa_laevigata	RLG00000004580
rosa_multiflora	Rmu_sc0000512.1_g000020
rosa_roxburghii	Rroxscaffold_3G00265070
rosa_rugosa	Rorug06G0500400 Rorug06G0500500 Rorug06G0500600 Rorug06G0500700 Rorug06G0500700
rosa_samantha	Rh7AG105800 Rh7BG108600 Rh7CG110600 Rh7DG108900
rosa_wichuraiana	Rw7G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	267, 271
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	230, 273
AvaII	GGWCC	2 cut(s)	230, 273
BamHI	GGATCC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	230, 273
BmgT120I	GGNCC	2 cut(s)	230, 273
BmiI	GGNNCC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	82, 197
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	267, 271
BspCNI	CTCAG	2 cut(s)	81, 198
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	14
BssMI	GATC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	68, 206
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	230, 273
CviJI	RGCY	4 cut(s)	74, 173, 224, 260
CviKI_1	RGCY	4 cut(s)	74, 173, 224, 260
DdeI	CTNAG	2 cut(s)	68, 206
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	230, 273
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	230
FaqI	GGGAC	1 cut(s)	146
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	208
Hpy188I	TCNGA	5 cut(s)	15, 71, 109, 154, 184
HpyAV	CCTTC	3 cut(s)	20, 51, 221
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	2 cut(s)	68, 206
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	3 cut(s)	82, 246, 268
Lsp1109I	GCAGC	1 cut(s)	61
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	27, 206
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	37, 40, 55, 133, 214
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	230, 273
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	6
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	230, 273
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	4 cut(s)	29, 76, 101, 235
SgeI	CNNG	8 cut(s)	31, 69, 109, 181, 186, 229, 245, 267
SinI	GGWCC	2 cut(s)	230, 273
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	267, 271
TasI	AATT	1 cut(s)	127
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	74
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	230, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.