Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Reverse (-)

5533032 .. 5535540

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGAAAGAAAAGAAACCGAGAACAAAAAGAGAAAGAAGTTGGAGTTGGACAAATTAAGCAACTTACCAAGTGACGTTACAGAACAAATCCTATCATATTTGCCAATCAAAGAAGCCGTAAGGACCAGTGTTTTATCAAGCAATTGGAGGCACAAATGGGCTACTCTTCGGCGTCTTGTGTTTGATGATAGAACAGCTAACCGCAACATTAGTATTCAAAGAGTTATCGATCATGTTCTTTTACTTCACGAAGGTCCTATAGATACTTTCAAGTTTTCTACAAAAAATTATCTAGAGAATTGTGAATTTGATAGATGGATTCTTTATCTATCAAGATTCTCTGTCAAAGAGTTCATACTGGAAAGAAGGTCTTCCTTCAACAAATACAATATCTCATCCTATTTGTTTTCTTGTAAAGATCTGACTCACTTGGGGTTGAGAAATTGTTGGATAAATCCTCCTTCGAATGTCAAAGGCTTTGCAATGTTGAAGAACCTTGATATTCGAAATGTTCGTGTGGCAAAAGATGTGTTGGAAAAAATTATTGTTGGCTCTCCACTGCTGGAGAGAATGATTCTATGTGACTTAGTGAGTGTCGGCGTTCTCAAGGTTGATGCACCAAATCTCCAATTCCTTAAAGTTGTAGGTGTTTCTGAAGAAATTAAGCTTCAGAATGTCCCGAATCTTGTTGATGTTTCAATCGGCCAAACAAGAATCGACCACAATGAGGCTTCTAGAAGAAGTTGTAGCAAATTGCTCCAGTATTTTCTTAGCCTGCCTGGTATCCAAAGGCTCACTATTGAAGGTTGCCTTTTAGAGCAGTGTGATATTAATTCATTTCCCTTGCCGACGGAGCTGCCTGAATTGCTTTCATGTCTGAACTTTCTTTCTGTAAGCATGCGCTTGAATAGTTTGGACGACATTTTAGTTGCTACGCTTCTTCTGAGAAGCTCACCTGCTCTACAAGTTCTAGAAATAGAGGTTCGCCAAGAGAGCAAGTCCAATGCTAAAAAACAAGTAACCGATTGGTTAAATAACAATCGACTTATTTGGGAATTCACTAAACTACGACGTCTGAAAGTAACTGGCTTCTCTTGTGTTACTGGAGAAGTAAACTTTCTTGACTATCTGTTTTCAAGCTTCCCTGCTCTTCAAGAACTAGAAATTTCGTTTAGAGACAACAACAAAATGGGGAAGAGATTAAAAGCTGCAGCTGGGGGAGATTATAACAATCGAAAATGCACATTCAACCAGCTGAGAATTATGAAAGTAACCAACTGTAGTGGTGTGAAAGCTGAAGCAGCTTATATCAAATTTTTGCTTTCAAGTTCACATGTGCTCAACACGATGATTCTTCAGCCTGTTTCTGCCGGAATTTCTTGGGAACTAGTTGAGTTGATGATATGGTTCAATCGCTTTTCGGCGCATGCCGAGTTAAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

482

Amino Acids

55.26

Weight (kDa)

9.22

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 58	7.7e-09	F-box domain
LRR_At1g61320_AtMIF1	PF23622	89 - 417	2.5e-15	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	104 - 326	5.7e-13	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1227
AarI	CACCTGC	1 cut(s)	964
AatII	GACGTC	1 cut(s)	1075
Acc36I	ACCTGC	1 cut(s)	964
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	5 cut(s)	305, 1055, 1164, 1313, 1374
AcuI	CTGAAG	4 cut(s)	653, 675, 1317, 1340
AcyI	GRCGYC	2 cut(s)	172, 1072
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflIII	ACRYGT	1 cut(s)	1333
AhlI	ACTAGT	1 cut(s)	1387
AjnI	CCWGG	1 cut(s)	778
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
Alw21I	GWGCWC	1 cut(s)	1341
Alw26I	GTCTC	1 cut(s)	1170
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	4 cut(s)	856, 1208, 1211, 1301
ApoI	RAATTY	5 cut(s)	305, 1055, 1164, 1313, 1374
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	903, 1426
AspS9I	GGNCC	2 cut(s)	123, 254
AsuHPI	GGTGA	1 cut(s)	945
AsuII	TTCGAA	2 cut(s)	464, 505
AvaII	GGWCC	2 cut(s)	123, 254
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	1341
BbvI	GCAGC	4 cut(s)	843, 1195, 1223, 1313
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	838, 872
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	1170
BcuI	ACTAGT	1 cut(s)	1387
BfaI	CTAG	5 cut(s)	293, 735, 971, 1160, 1388
BfmI	CTRYAG	3 cut(s)	258, 1209, 1279
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	794
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	4 cut(s)	857, 1209, 1212, 1302
BlsI	GCNGC	4 cut(s)	858, 1210, 1213, 1303
Bme1390I	CCNGG	1 cut(s)	780
Bme18I	GGWCC	2 cut(s)	123, 254
BmgT120I	GGNCC	2 cut(s)	123, 254
BmrFI	CCNGG	1 cut(s)	780
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	3 cut(s)	584, 743, 1125
Bpu14I	TTCGAA	2 cut(s)	464, 505
BpuEI	CTTGAG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	228
BsaHI	GRCGYC	2 cut(s)	172, 1072
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	5 cut(s)	126, 363, 760, 1090, 1108
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	935, 1247
BseNI	ACTGG	5 cut(s)	126, 363, 760, 1090, 1108
BseXI	GCAGC	4 cut(s)	843, 1195, 1223, 1313
BseYI	CCCAGC	1 cut(s)	1214
BshFI	GGCC	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	1341
BsiSI	CCGG	1 cut(s)	1371
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	1 cut(s)	1170
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	705
Bsp119I	TTCGAA	2 cut(s)	464, 505
Bsp1286I	GDGCHC	1 cut(s)	1341
Bsp143I	GATC	2 cut(s)	229, 418
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	2 cut(s)	936, 1248
BspDI	ATCGAT	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	1213
BspMI	ACCTGC	1 cut(s)	964
BspQI	GCTCTTC	1 cut(s)	1155
BspT104I	TTCGAA	2 cut(s)	464, 505
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	5 cut(s)	126, 363, 760, 1090, 1108
BssMI	GATC	2 cut(s)	229, 418
BssNI	GRCGYC	2 cut(s)	172, 1072
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	1280
Bst6I	CTCTTC	3 cut(s)	171, 1155, 1190
BstACI	GRCGYC	2 cut(s)	172, 1072
BstBI	TTCGAA	2 cut(s)	464, 505
BstC8I	GCNNGC	3 cut(s)	776, 899, 1428
BstDEI	CTNAG	4 cut(s)	586, 770, 944, 1256
BstF5I	GGATG	1 cut(s)	395
BstHHI	GCGC	2 cut(s)	903, 1426
BstKTI	GATC	2 cut(s)	232, 421
BstMAI	GTCTC	1 cut(s)	1170
BstMBI	GATC	2 cut(s)	229, 418
BstMWI	GCNNNNNNNGC	4 cut(s)	853, 865, 993, 1301
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	3 cut(s)	901, 1337, 1430
BstSCI	CCNGG	1 cut(s)	778
BstSFI	CTRYAG	3 cut(s)	258, 1209, 1279
BstV1I	GCAGC	4 cut(s)	843, 1195, 1223, 1313
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	2 cut(s)	557, 827
BtsIMutI	CAGTG	3 cut(s)	133, 557, 827
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	3 cut(s)	776, 899, 1428
CfoI	GCGC	2 cut(s)	903, 1426
Cfr13I	GGNCC	2 cut(s)	123, 254
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	1264, 1299
CviAII	CATG	5 cut(s)	233, 873, 898, 1334, 1427
DdeI	CTNAG	4 cut(s)	586, 770, 944, 1256
DpnI	GATC	2 cut(s)	231, 420
DpnII	GATC	2 cut(s)	229, 418
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	3 cut(s)	171, 1155, 1190
EarI	CTCTTC	3 cut(s)	171, 1155, 1190
Eco47I	GGWCC	2 cut(s)	123, 254
Eco57I	CTGAAG	4 cut(s)	653, 675, 1317, 1340
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	778
FaeI	CATG	5 cut(s)	236, 876, 901, 1337, 1430
FalI	AAGNNNNNCTT	4 cut(s)	355, 387, 795, 827
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	5 cut(s)	232, 872, 897, 1333, 1426
Fnu4HI	GCNGC	4 cut(s)	857, 1209, 1212, 1302
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	4 cut(s)	857, 1209, 1212, 1302
FspBI	CTAG	5 cut(s)	293, 735, 971, 1160, 1388
GlaI	GCGC	2 cut(s)	902, 1425
GluI	GCNGC	4 cut(s)	857, 1209, 1212, 1302
GsaI	CCCAGC	1 cut(s)	1218
GsuI	CTGGAG	3 cut(s)	584, 743, 1125
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	1 cut(s)	1371
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	903, 1426
Hin1I	GRCGYC	2 cut(s)	172, 1072
Hin1II	CATG	5 cut(s)	236, 876, 901, 1337, 1430
Hin6I	GCGC	2 cut(s)	901, 1424
HinP1I	GCGC	2 cut(s)	901, 1424
HindIII	AAGCTT	2 cut(s)	665, 1138
HinfI	GANTC	7 cut(s)	319, 336, 424, 574, 682, 714, 1351
HpaII	CCGG	1 cut(s)	1371
HphI	GGTGA	1 cut(s)	945
Hpy166II	GTNNAC	2 cut(s)	1114, 1331
Hpy188I	TCNGA	6 cut(s)	423, 655, 672, 879, 945, 1077
Hpy188III	TCNNGA	9 cut(s)	248, 293, 333, 679, 735, 971, 1121, 1154, 1443
Hpy8I	GTNNAC	2 cut(s)	1114, 1331
Hpy99I	CGWCG	2 cut(s)	853, 1074
HpyAV	CCTTC	5 cut(s)	245, 360, 385, 471, 797
HpyCH4III	ACNGT	1 cut(s)	1280
HpyCH4IV	ACGT	2 cut(s)	75, 1072
HpyCH4V	TGCA	4 cut(s)	482, 617, 1211, 1242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	853, 865, 993, 1301
HpyF3I	CTNAG	4 cut(s)	586, 770, 944, 1256
HpySE526I	ACGT	2 cut(s)	75, 1072
Hsp92I	GRCGYC	2 cut(s)	172, 1072
Hsp92II	CATG	5 cut(s)	236, 876, 901, 1337, 1430
HspAI	GCGC	2 cut(s)	901, 1424
Kzo9I	GATC	2 cut(s)	229, 418
LguI	GCTCTTC	1 cut(s)	1155
LmnI	GCTCC	2 cut(s)	762, 853
Lsp1109I	GCAGC	4 cut(s)	843, 1195, 1223, 1313
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	5 cut(s)	293, 735, 971, 1160, 1388
MaeII	ACGT	2 cut(s)	75, 1072
MaeIII	GTNAC	7 cut(s)	71, 76, 581, 1018, 1081, 1099, 1270
MalI	GATC	2 cut(s)	231, 420
MboI	GATC	2 cut(s)	229, 418
MboII	GAAGA	9 cut(s)	158, 363, 502, 668, 750, 932, 1142, 1207, 1346
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	1341
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	4 cut(s)	21, 27, 428, 513
MnlI	CCTC	4 cut(s)	141, 468, 721, 973
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	7 cut(s)	56, 636, 663, 831, 1031, 1202, 1436
MspA1I	CMGCKG	2 cut(s)	1214, 1255
MspI	CCGG	1 cut(s)	1371
MspR9I	CCNGG	1 cut(s)	780
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	780
MwoI	GCNNNNNNNGC	4 cut(s)	853, 865, 993, 1301
NdeII	GATC	2 cut(s)	229, 418
NlaIII	CATG	5 cut(s)	236, 876, 901, 1337, 1430
NmuCI	GTSAC	2 cut(s)	71, 581
NspI	RCATGY	3 cut(s)	901, 1337, 1430
NspV	TTCGAA	2 cut(s)	464, 505
PaeI	GCATGC	2 cut(s)	901, 1430
PaqCI	CACCTGC	1 cut(s)	964
PciI	ACATGT	1 cut(s)	1333
PciSI	GCTCTTC	1 cut(s)	1155
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	6 cut(s)	319, 336, 574, 682, 714, 1351
PkrI	GCNGC	4 cut(s)	858, 1210, 1213, 1303
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	1333
PshBI	ATTAAT	1 cut(s)	831
PsiI	TTATAA	1 cut(s)	1227
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	778
PspFI	CCCAGC	1 cut(s)	1214
PspGI	CCWGG	1 cut(s)	778
PspPI	GGNCC	2 cut(s)	123, 254
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	1213
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	2 cut(s)	1214, 1255
SapI	GCTCTTC	1 cut(s)	1155
SaqAI	TTAA	7 cut(s)	56, 636, 663, 831, 1031, 1202, 1436
SatI	GCNGC	4 cut(s)	857, 1209, 1212, 1302
Sau3AI	GATC	2 cut(s)	229, 418
Sau96I	GGNCC	2 cut(s)	123, 254
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	1 cut(s)	1341
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	3 cut(s)	258, 1209, 1279
SfuI	TTCGAA	2 cut(s)	464, 505
SinI	GGWCC	2 cut(s)	123, 254
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	1387
SphI	GCATGC	2 cut(s)	901, 1430
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	5 cut(s)	293, 735, 971, 1160, 1388
StyD4I	CCNGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	1280
TaiI	ACGT	2 cut(s)	78, 1075
TaqI	TCGA	6 cut(s)	228, 464, 505, 717, 1042, 1234
TfiI	GAWTC	6 cut(s)	319, 336, 574, 682, 714, 1351
Tru1I	TTAA	7 cut(s)	56, 636, 663, 831, 1031, 1202, 1436
Tru9I	TTAA	7 cut(s)	56, 636, 663, 831, 1031, 1202, 1436
TscAI	CASTG	3 cut(s)	133, 564, 827
TseFI	GTSAC	2 cut(s)	71, 581
TseI	GCWGC	4 cut(s)	856, 1208, 1211, 1301
Tsp45I	GTSAC	2 cut(s)	71, 581
TspDTI	ATGAA	4 cut(s)	343, 825, 861, 1280
TspGWI	ACGGA	1 cut(s)	866
TspRI	CASTG	3 cut(s)	133, 564, 827
VpaK11BI	GGWCC	2 cut(s)	123, 254
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	5 cut(s)	305, 1055, 1164, 1313, 1374
XbaI	TCTAGA	3 cut(s)	292, 734, 970
XceI	RCATGY	3 cut(s)	901, 1337, 1430
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	5 cut(s)	293, 735, 971, 1160, 1388
ZraI	GACGTC	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.