Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411403.1

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1159

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggatcagttggacaaattaagcaacctaccaactggtgttacacaccagattttgtcatacttacctatcaaccaggcagtgaggacaagtattttatcaagtgactggaggtacaaatgggctcagcttccatgtcttgtgtttgatgatagaactcatagaagtggatatccaattgcaaaggttgtggatcatgtgctgttacttcatagtggccgcattgacactttcaagctttctacttttaactatccagccgctagggatatagataaatggattgcttatctatcaagaaacaatgtcaaagtgttcgtactgaaaatatgggagctgcagcctccctacaatgtgttttccggcttcttttcttttaaagatttgactcatttagagttgtgcaattgtttgcttaaacctccaacgacattcaaaggcttcaggatgttgaagagccttcatcttcaagaagttattgtgtccggacatgtgttgggaaaactaattgcttgctgtcctcagcttgagagaataattctatgtgacttaaagggaatcactgatgtcactattgatgcaccaagtatccggttccttagagttcgaggcagttttgaggatgttctactagtaaataccttaaatcttgttgatgtttcaattgactggaaacaagtttctacaatcagttctggcaaattgctcaggtatttttttgaactgcctcgtattgaaaggctcacacttttggatggctttttagagtatgctgttggttccttgaccaagaagctgctgcctacaccatgtctatgtctgaactttctttctataagaatacgcttgaataatttggatgagatttcaactgctatccaccttatgagaagcgcacctgctctacaagaactagacattttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

308

Amino Acids

35.2

Weight (kDa)

8.86

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	907
Acc36I	ACCTGC	1 cut(s)	907
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	2 cut(s)	220, 261
AclWI	GGATC	2 cut(s)	12, 201
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	116, 321
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	9 cut(s)	235, 436, 454, 470, 663, 722, 737, 850, 870
AhlI	ACTAGT	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	130, 238, 337, 526, 796
AluI	AGCT	5 cut(s)	130, 238, 337, 526, 796
AlwI	GGATC	2 cut(s)	12, 201
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	4 cut(s)	337, 340, 796, 799
AspLEI	GCGC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	324, 352, 783, 786
BccI	CCATC	1 cut(s)	749
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	631
BfaI	CTAG	3 cut(s)	264, 632, 914
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	907
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	6 cut(s)	221, 262, 339, 342, 798, 801
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	596, 781
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	522, 707
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	548
BsaWI	WCCGGW	2 cut(s)	485, 591
Bse1I	ACTGG	3 cut(s)	40, 113, 674
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	4 cut(s)	453, 628, 760, 865
BseMII	CTCAG	3 cut(s)	140, 536, 721
BseNI	ACTGG	3 cut(s)	40, 113, 674
BseXI	GCAGC	4 cut(s)	324, 352, 783, 786
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	363, 486, 592
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	4, 193
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	220, 261
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	139, 535, 720
BspEI	TCCGGA	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	596, 781
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	907
BspPI	GGATC	2 cut(s)	12, 201
BspQI	GCTCTTC	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	40, 113, 674
BssMI	GATC	2 cut(s)	4, 193
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	4 cut(s)	126, 522, 599, 707
BstF5I	GGATG	4 cut(s)	453, 628, 760, 865
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	2 cut(s)	7, 196
BstMBI	GATC	2 cut(s)	4, 193
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	324, 352, 783, 786
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	453, 628, 760, 865
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 561
BveI	ACCTGC	1 cut(s)	907
Cac8I	GCNNGC	1 cut(s)	514
CfoI	GCGC	1 cut(s)	896
Csp6I	GTAC	2 cut(s)	115, 320
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	4 cut(s)	135, 197, 491, 810
CviQI	GTAC	2 cut(s)	115, 320
DdeI	CTNAG	4 cut(s)	126, 522, 599, 707
DpnI	GATC	2 cut(s)	6, 195
DpnII	GATC	2 cut(s)	4, 193
DraI	TTTAAA	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	4 cut(s)	138, 200, 494, 813
FatI	CATG	4 cut(s)	134, 196, 490, 809
Fnu4HI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
FokI	GGATG	4 cut(s)	460, 635, 767, 872
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
FspBI	CTAG	3 cut(s)	264, 632, 914
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	363, 486, 592
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	4 cut(s)	138, 200, 494, 813
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	388, 558
HpaII	CCGG	3 cut(s)	363, 486, 592
Hpy188I	TCNGA	1 cut(s)	822
Hpy188III	TCNNGA	4 cut(s)	297, 445, 470, 486
HpyAV	CCTTC	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	182, 340, 405, 581
HpyF3I	CTNAG	4 cut(s)	126, 522, 599, 707
Hsp92II	CATG	4 cut(s)	138, 200, 494, 813
HspAI	GCGC	1 cut(s)	894
Kpn2I	TCCGGA	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	4, 193
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	324, 352, 783, 786
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	264, 632, 914
MaeIII	GTNAC	5 cut(s)	40, 104, 204, 545, 568
MalI	GATC	2 cut(s)	6, 195
MboI	GATC	2 cut(s)	4, 193
MboII	GAAGA	2 cut(s)	458, 466
MfeI	CAATTG	3 cut(s)	177, 406, 663
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	8 cut(s)	17, 177, 406, 507, 537, 663, 701, 853
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	8 cut(s)	78, 105, 354, 432, 531, 602, 613, 738
MroI	TCCGGA	1 cut(s)	485
MseI	TTAA	6 cut(s)	20, 249, 378, 417, 551, 644
MslI	CAYNNNNRTG	2 cut(s)	165, 814
MspI	CCGG	3 cut(s)	363, 486, 592
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	3 cut(s)	177, 406, 663
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	4, 193
NlaIII	CATG	4 cut(s)	138, 200, 494, 813
NlaIV	GGNNCC	2 cut(s)	596, 781
NmuCI	GTSAC	3 cut(s)	104, 545, 568
NspI	RCATGY	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	907
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	221, 262, 339, 342, 798, 801
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	596, 781
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	116, 321
RsaNI	GTAC	2 cut(s)	115, 320
RseI	CAYNNNNRTG	2 cut(s)	165, 814
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	6 cut(s)	20, 249, 378, 417, 551, 644
SatI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
Sau3AI	GATC	2 cut(s)	4, 193
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	165, 814
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SpeI	ACTAGT	1 cut(s)	631
Sse9I	AATT	8 cut(s)	17, 177, 406, 507, 537, 663, 701, 853
SsiI	CCGC	2 cut(s)	220, 261
SspMI	CTAG	3 cut(s)	264, 632, 914
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	607
TasI	AATT	8 cut(s)	17, 177, 406, 507, 537, 663, 701, 853
TauI	GCSGC	2 cut(s)	222, 263
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	6 cut(s)	20, 249, 378, 417, 551, 644
Tru9I	TTAA	6 cut(s)	20, 249, 378, 417, 551, 644
TscAI	CASTG	2 cut(s)	87, 568
TseFI	GTSAC	3 cut(s)	104, 545, 568
TseI	GCWGC	4 cut(s)	337, 340, 796, 799
Tsp45I	GTSAC	3 cut(s)	104, 545, 568
TspDTI	ATGAA	2 cut(s)	200, 452
TspRI	CASTG	2 cut(s)	87, 568
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	264, 632, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.