Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

30487623 .. 30489425

Gene Structure 1803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGATCAGTTGGACAAATTAAGCAACCTACCAACTGGTGTTACACACCAGATTTTGTCATACTTACCTATCAAGCAGGCAGTGAGGACAAGTATTTTATCAAGTGACTGGAGGTACAAATGGGCTCAGCTTCCATGTCTTGTGTTTGATGATAAAAGTGGATATCCAATTGCAAAGGTTGTGGATCATGTGCTGTTACTTCATAGTGGCCGCATTGACACTTTCAAGCTTTCTACTTTTAACTATCTAGCCCATAGGGATATAGATAAATGGATTGCTCATCTATCAAGAAACAATGTCAAAGTGTTCGTACTGAAAGTATGGGAGCAGTCTCCCTACAATGTGTTTTCCGGCTTCTTTTCTTTTAAAGATTTGACTCATTTAGAGTTATGCAATTGTTTGCTTAAACCTCCATCGACATTCAAAGGCTTCAGGATGTTGAAGAGCCTTCATCTTCAAGAAGTTATTGTGTCCGGACATGTGTTGGGAAAACTAATTGCTTGCTGTCGTCAGCTTGAGAGAATAATTCTATGTGACTTAAAGGGAATCACTGATGTCACTATTGATGCACCAAGTATCCGGTTCCTTAGAGTTCGAGGCAGTTTTGAGGATGTTCTACTAGCAAATACCTTAAATCTTGTTGATGTTTCAATTGACTGGAAACAAGTTTCTACAATCAGTTCTGGCAAATTGCTCAGGTATTTTTTTGAACTGCCTCGTATTGAAAGGCTCACACTTAAGGATGGCTTTTCAGAGTATGCTGTTGGTTCATTGACCAAGAATTGGCTGCTGCCTAAACCATGTCTATGTCTGAACTTTCTTTCTATAAGAATACGCTTGAATAATTTGGACGAGATTTTAACTGCTATCCACCTTATGAGAAGCGCACCTGCTCTACAAGAACTAGACATTTTGGTTCGAAAAGGAAAGGAAACTAATGATGGAGAAGCAACCTATTGTTTAAATGACAAACAGAATTGGGAATTCACCCAACTGCAACGAGTGAAAGTAACTGGCTTCTCTGGTGTCAAAGCAGAAGTAGACTTCATTGAATTTCTGTTATTAACCTCACCTGGTCTTCAAGAACTAGAAATTTCACTTTGTCAAGATGTGGAAGAAGTGGACTTTTCTTGGTTAGATGACAACCAGAAGACTTGTGCATTCACACAACTGCGAGTTGTGAAAGTAACTGGCTTCTCTGGTGTCAAAGCCGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTACTTCACAAATGCTTGAGAGAATGATTCTTCAACCTGCTTCCGCCAACGTTTCTTGGGAATTATTTAAATTATTGCCGGCGTTCAAACGCGACTCATTACATGCAGATTTAAAGCTCTTGGATCCATCAAGTCCTGTACAGTATTCTGATGATTCATCTTCTGATATGGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

473

Amino Acids

53.98

Weight (kDa)

6.57

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	67 - 228	1e-09	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	88 - 304	1.5e-12	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	184 - 373	2.9e-06	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc36I	ACCTGC	2 cut(s)	898, 1288
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	1 cut(s)	1335
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	211, 1287
AclI	AACGTT	1 cut(s)	1293
AclWI	GGATC	4 cut(s)	12, 192, 1361, 1374
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	3 cut(s)	983, 1052, 1092
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	4 cut(s)	116, 312, 1246, 1383
AfiI	CCNNNNNNNGG	1 cut(s)	783
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	1072
AluBI	AGCT	4 cut(s)	130, 229, 514, 1360
AluI	AGCT	4 cut(s)	130, 229, 514, 1360
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	4 cut(s)	12, 192, 1361, 1374
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	787, 790
ApoI	RAATTY	3 cut(s)	983, 1052, 1092
AspLEI	GCGC	1 cut(s)	887
AsuHPI	GGTGA	2 cut(s)	979, 1062
AsuII	TTCGAA	1 cut(s)	919
BamHI	GGATCC	1 cut(s)	1366
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	1070, 1157
BbvI	GCAGC	2 cut(s)	774, 777
BccI	CCATC	4 cut(s)	421, 737, 935, 1378
BciT130I	CCWGG	1 cut(s)	1074
BciVI	GTATCC	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	4 cut(s)	248, 620, 905, 1088
BfrI	CTTAAG	1 cut(s)	737
BfuAI	ACCTGC	2 cut(s)	898, 1288
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	3 cut(s)	211, 788, 791
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	3 cut(s)	212, 789, 792
BmcAI	AGTACT	1 cut(s)	1246
Bme1390I	CCNGG	1 cut(s)	1074
BmiI	GGNNCC	2 cut(s)	584, 1368
BmrFI	CCNGG	1 cut(s)	1074
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	2 cut(s)	1070, 1157
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	695
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	2 cut(s)	536, 1280
BsaWI	WCCGGW	2 cut(s)	473, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	783
Bse118I	RCCGGY	1 cut(s)	1321
Bse1I	ACTGG	5 cut(s)	40, 113, 662, 1018, 1195
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	1074
BseGI	GGATG	3 cut(s)	441, 616, 748
BseLI	CCNNNNNNNGG	1 cut(s)	783
BseMII	CTCAG	2 cut(s)	140, 709
BseNI	ACTGG	5 cut(s)	40, 113, 662, 1018, 1195
BseXI	GCAGC	2 cut(s)	774, 777
Bsh1236I	CGCG	1 cut(s)	1335
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	351, 474, 580, 1322
BslI	CCNNNNNNNGG	1 cut(s)	783
BsmAI	GTCTC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	1160
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	919
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	1381
Bsp143I	GATC	3 cut(s)	4, 184, 1366
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	211, 1287
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	139, 708
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	1335
BspLI	GGNNCC	2 cut(s)	584, 1368
BspMI	ACCTGC	2 cut(s)	898, 1288
BspPI	GGATC	4 cut(s)	12, 192, 1361, 1374
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	919
BspTI	CTTAAG	1 cut(s)	737
BsrFI	RCCGGY	1 cut(s)	1321
BsrGI	TGTACA	1 cut(s)	1381
BsrI	ACTGG	5 cut(s)	40, 113, 662, 1018, 1195
BssAI	RCCGGY	1 cut(s)	1321
BssMI	GATC	3 cut(s)	4, 184, 1366
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	1386
Bst6I	CTCTTC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	737
BstAUI	TGTACA	1 cut(s)	1381
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	3 cut(s)	78, 502, 1323
BstDEI	CTNAG	3 cut(s)	126, 587, 695
BstF5I	GGATG	3 cut(s)	441, 616, 748
BstFNI	CGCG	1 cut(s)	1335
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	3 cut(s)	7, 187, 1369
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	4, 184, 1366
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	2 cut(s)	482, 1349
BstSCI	CCNGG	1 cut(s)	1072
BstUI	CGCG	1 cut(s)	1335
BstV1I	GCAGC	2 cut(s)	774, 777
BstV2I	GAAGAC	2 cut(s)	1070, 1157
BstX2I	RGATCY	1 cut(s)	1366
BstYI	RGATCY	1 cut(s)	1366
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	441, 616, 748
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 549
BveI	ACCTGC	2 cut(s)	898, 1288
Cac8I	GCNNGC	3 cut(s)	78, 502, 1323
CfoI	GCGC	1 cut(s)	887
Cfr10I	RCCGGY	1 cut(s)	1321
CsiI	ACCWGGT	1 cut(s)	1072
Csp6I	GTAC	4 cut(s)	115, 311, 1245, 1382
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	5 cut(s)	135, 188, 479, 801, 1346
CviQI	GTAC	4 cut(s)	115, 311, 1245, 1382
DdeI	CTNAG	3 cut(s)	126, 587, 695
DpnI	GATC	3 cut(s)	6, 186, 1368
DpnII	GATC	3 cut(s)	4, 184, 1366
DraI	TTTAAA	4 cut(s)	367, 963, 1312, 1356
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	1276
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	983
EcoRII	CCWGG	1 cut(s)	1072
EcoRV	GATATC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	5 cut(s)	138, 191, 482, 804, 1349
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FatI	CATG	5 cut(s)	134, 187, 478, 800, 1345
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	3 cut(s)	211, 788, 791
FokI	GGATG	3 cut(s)	448, 623, 755
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	3 cut(s)	211, 788, 791
FspBI	CTAG	4 cut(s)	248, 620, 905, 1088
GlaI	GCGC	1 cut(s)	886
GluI	GCNGC	3 cut(s)	211, 788, 791
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	4 cut(s)	351, 474, 580, 1322
HhaI	GCGC	1 cut(s)	887
Hin1II	CATG	5 cut(s)	138, 191, 482, 804, 1349
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	5 cut(s)	376, 546, 1270, 1337, 1397
HpaII	CCGG	4 cut(s)	351, 474, 580, 1322
HphI	GGTGA	2 cut(s)	979, 1062
Hpy166II	GTNNAC	2 cut(s)	1042, 1123
Hpy188I	TCNGA	5 cut(s)	754, 813, 1229, 1393, 1408
Hpy188III	TCNNGA	6 cut(s)	288, 433, 458, 474, 1082, 1106
Hpy8I	GTNNAC	2 cut(s)	1042, 1123
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	1386
HpyCH4IV	ACGT	1 cut(s)	1293
HpyCH4V	TGCA	6 cut(s)	173, 393, 569, 997, 1160, 1349
HpyF3I	CTNAG	3 cut(s)	126, 587, 695
HpySE526I	ACGT	1 cut(s)	1293
Hsp92II	CATG	5 cut(s)	138, 191, 482, 804, 1349
HspAI	GCGC	1 cut(s)	885
Kpn2I	TCCGGA	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	1321
KroNI	GCCGGC	1 cut(s)	1323
Kzo9I	GATC	3 cut(s)	4, 184, 1366
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	774, 777
LweI	GCATC	1 cut(s)	556
MabI	ACCWGGT	1 cut(s)	1072
MaeI	CTAG	4 cut(s)	248, 620, 905, 1088
MaeII	ACGT	1 cut(s)	1293
MaeIII	GTNAC	7 cut(s)	40, 104, 195, 533, 556, 1009, 1186
MalI	GATC	3 cut(s)	6, 186, 1368
MboI	GATC	3 cut(s)	4, 184, 1366
MboII	GAAGA	7 cut(s)	446, 454, 1070, 1127, 1162, 1265, 1395
MfeI	CAATTG	3 cut(s)	168, 394, 651
MflI	RGATCY	1 cut(s)	1366
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	2 cut(s)	370, 1331
MnlI	CCTC	7 cut(s)	78, 105, 420, 590, 601, 726, 1078
MroI	TCCGGA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	1321
MslI	CAYNNNNRTG	1 cut(s)	805
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	4 cut(s)	351, 474, 580, 1322
MspR9I	CCNGG	1 cut(s)	1074
MunI	CAATTG	3 cut(s)	168, 394, 651
Mva1269I	GAATGC	1 cut(s)	1160
MvaI	CCWGG	1 cut(s)	1074
MvnI	CGCG	1 cut(s)	1335
NaeI	GCCGGC	1 cut(s)	1323
NdeII	GATC	3 cut(s)	4, 184, 1366
NgoMIV	GCCGGC	1 cut(s)	1321
NlaIII	CATG	5 cut(s)	138, 191, 482, 804, 1349
NlaIV	GGNNCC	2 cut(s)	584, 1368
NmuCI	GTSAC	3 cut(s)	104, 533, 556
NspI	RCATGY	2 cut(s)	482, 1349
NspV	TTCGAA	1 cut(s)	919
PaqCI	CACCTGC	1 cut(s)	898
PciI	ACATGT	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	1160
PdiI	GCCGGC	1 cut(s)	1323
PfeI	GAWTC	3 cut(s)	546, 1270, 1397
PflMI	CCANNNNNTGG	1 cut(s)	783
PkrI	GCNGC	3 cut(s)	212, 789, 792
PleI	GAGTC	2 cut(s)	370, 1331
PpsI	GAGTC	2 cut(s)	370, 1331
PscI	ACATGT	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	1293
Psp6I	CCWGG	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	2 cut(s)	584, 1368
PsuI	RGATCY	1 cut(s)	1366
RsaI	GTAC	4 cut(s)	116, 312, 1246, 1383
RsaNI	GTAC	4 cut(s)	115, 311, 1245, 1382
RseI	CAYNNNNRTG	1 cut(s)	805
SapI	GCTCTTC	1 cut(s)	437
SatI	GCNGC	3 cut(s)	211, 788, 791
Sau3AI	GATC	3 cut(s)	4, 184, 1366
ScaI	AGTACT	1 cut(s)	1246
SchI	GAGTC	2 cut(s)	370, 1331
ScrFI	CCNGG	1 cut(s)	1074
SduI	GDGCHC	1 cut(s)	127
SexAI	ACCWGGT	1 cut(s)	1072
SfaNI	GCATC	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	919
SmiI	ATTTAAAT	1 cut(s)	1312
SmiMI	CAYNNNNRTG	1 cut(s)	805
SmlI	CTYRAG	3 cut(s)	515, 737, 1259
SmoI	CTYRAG	3 cut(s)	515, 737, 1259
SsiI	CCGC	2 cut(s)	211, 1287
SspMI	CTAG	4 cut(s)	248, 620, 905, 1088
StyD4I	CCNGG	1 cut(s)	1072
SwaI	ATTTAAAT	1 cut(s)	1312
TaaI	ACNGT	1 cut(s)	1386
TaiI	ACGT	1 cut(s)	1296
TaqI	TCGA	3 cut(s)	416, 595, 919
TatI	WGTACW	2 cut(s)	1244, 1381
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	546, 1270, 1397
TscAI	CASTG	2 cut(s)	87, 556
TseFI	GTSAC	3 cut(s)	104, 533, 556
TseI	GCWGC	2 cut(s)	787, 790
Tsp45I	GTSAC	3 cut(s)	104, 533, 556
TspDTI	ATGAA	6 cut(s)	191, 440, 759, 1036, 1213, 1389
TspRI	CASTG	2 cut(s)	87, 556
Van91I	CCANNNNNTGG	1 cut(s)	783
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	983, 1052, 1092
XceI	RCATGY	2 cut(s)	482, 1349
XmiI	GTMKAC	1 cut(s)	1041
XspI	CTAG	4 cut(s)	248, 620, 905, 1088
ZrmI	AGTACT	1 cut(s)	1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.