Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

15352 .. 17179

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atggatcagttggacaaattaagcaacctaccaactggtgttacacaccagattttgtcttacttacctatcaagcaggcagtgaggacaagtattttatcaagtgactggaggtacaaatgggctcagcttccatgtcttgtgtttgatgatagaactcatagaagtggatatccaattgcaaaggttgtggatcatgtgctgttacttcatagtggccgcattgacactttcaagctttctacttttaactatccagccgctagggatatagataaatggattgcttatctatcaagaaacaatgtcaaagtgttcgtactgaaaatatgggagctgcagcctccctacaatgtgttttccggcttcttttcttttaaagatttgactcatttagagttgtgcaattgtttgcttaaacctccaacgacattcaaaggcttcaggatgttgaagagccttcatcttcaagaagttattgtgtccggacatgtgttgggaaaactaattgcttgctgtcctcagcttgagagaataattctatgtgacttaaagggaatcactgatgtcactattgatgcaccaagtatccggttccttagagttcgaggcagttttgaggatgttctactagtaaataccttaaatcttgttgatgtttcaattgactggaaacaagtttctacaatcagttctggcaaattgctcaggtatttttttgaactgcctcgtattgaaaggctcacacttttggatggctttttagagtatgctgttggttccttgaccaagaagctgctgcctacaccatgtctatgtctgaactttctttctataagaatacgcttgaataatttggatgagatttcaactgctatccaccttatgagaagcgcacctgctctacaagaactagacattttggttcgaaaaggagaggagactaatgatggaaaagcaaccttttgtttaattgacaaacagaattgggaattcacccaactgcaacgagtgaaagtaaccggcttctctggtgtcaaagcagaagtagacttcattgaatttctgttattaacctcacctggtcttcaagaactagaaatttcattttgtcaagatgtggaagaagcggacttttcttggttagatgactaccagaagacttgtgcattcacacaactgcgagttgtgaaagtaactggcttctctggtgtcagagccgaagcagatttcattagatttctgctttcaagcacttcacaaatgcttgagaaagtgattcttcaacctgcttctgccaaagttttttgggatgtatttaaattattgccggcgttcagacgcgactcattacatgcagatttaaagctcttggacccatcaattcatgtacaggattctgatgactcctcttctgactccgactctgatatggattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

480

Amino Acids

54.73

Weight (kDa)

6.1

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	907
Acc36I	ACCTGC	2 cut(s)	907, 1297
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	1 cut(s)	1344
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	3 cut(s)	220, 261, 1130
AclWI	GGATC	2 cut(s)	12, 201
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	992, 1061, 1101
AcuI	CTGAAG	1 cut(s)	427
AfaI	GTAC	3 cut(s)	116, 321, 1392
AflIII	ACRYGT	1 cut(s)	490
AhlI	ACTAGT	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	1081
AluBI	AGCT	6 cut(s)	130, 238, 337, 526, 796, 1369
AluI	AGCT	6 cut(s)	130, 238, 337, 526, 796, 1369
Alw26I	GTCTC	1 cut(s)	935
AlwI	GGATC	2 cut(s)	12, 201
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	4 cut(s)	337, 340, 796, 799
ApoI	RAATTY	3 cut(s)	992, 1061, 1101
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	1 cut(s)	1375
AsuHPI	GGTGA	2 cut(s)	988, 1071
AsuII	TTCGAA	1 cut(s)	928
AvaII	GGWCC	1 cut(s)	1375
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	1079, 1166
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	324, 352, 783, 786
BccI	CCATC	3 cut(s)	749, 944, 1387
BciT130I	CCWGG	1 cut(s)	1083
BciVI	GTATCC	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	935
BcuI	ACTAGT	1 cut(s)	631
BfaI	CTAG	4 cut(s)	264, 632, 914, 1097
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	2 cut(s)	907, 1297
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	6 cut(s)	221, 262, 339, 342, 798, 801
Bme1390I	CCNGG	1 cut(s)	1083
Bme18I	GGWCC	1 cut(s)	1375
BmgT120I	GGNCC	1 cut(s)	1375
BmiI	GGNNCC	3 cut(s)	596, 781, 1377
BmrFI	CCNGG	1 cut(s)	1083
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	2 cut(s)	1079, 1166
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	522, 707
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	2 cut(s)	548, 1289
BsaWI	WCCGGW	2 cut(s)	485, 591
Bse118I	RCCGGY	2 cut(s)	1022, 1330
Bse1I	ACTGG	4 cut(s)	40, 113, 674, 1204
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	1083
BseGI	GGATG	5 cut(s)	453, 628, 760, 865, 1318
BseMII	CTCAG	3 cut(s)	140, 536, 721
BseNI	ACTGG	4 cut(s)	40, 113, 674, 1204
BseRI	GAGGAG	2 cut(s)	953, 1399
BseXI	GCAGC	4 cut(s)	324, 352, 783, 786
Bsh1236I	CGCG	1 cut(s)	1344
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	5 cut(s)	363, 486, 592, 1023, 1331
BsmAI	GTCTC	1 cut(s)	935
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	928
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	485
Bsp1407I	TGTACA	1 cut(s)	1390
Bsp143I	GATC	2 cut(s)	4, 193
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	3 cut(s)	220, 261, 1130
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	139, 535, 720
BspEI	TCCGGA	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	1344
BspLI	GGNNCC	3 cut(s)	596, 781, 1377
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	2 cut(s)	907, 1297
BspPI	GGATC	2 cut(s)	12, 201
BspQI	GCTCTTC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	928
BsrFI	RCCGGY	2 cut(s)	1022, 1330
BsrGI	TGTACA	1 cut(s)	1390
BsrI	ACTGG	4 cut(s)	40, 113, 674, 1204
BssAI	RCCGGY	2 cut(s)	1022, 1330
BssMI	GATC	2 cut(s)	4, 193
Bst2UI	CCWGG	1 cut(s)	1083
Bst6I	CTCTTC	2 cut(s)	449, 1417
BstAUI	TGTACA	1 cut(s)	1390
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	3 cut(s)	78, 514, 1332
BstDEI	CTNAG	4 cut(s)	126, 522, 599, 707
BstF5I	GGATG	5 cut(s)	453, 628, 760, 865, 1318
BstFNI	CGCG	1 cut(s)	1344
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	2 cut(s)	7, 196
BstMAI	GTCTC	1 cut(s)	935
BstMBI	GATC	2 cut(s)	4, 193
BstNI	CCWGG	1 cut(s)	1083
BstNSI	RCATGY	2 cut(s)	494, 1358
BstSCI	CCNGG	1 cut(s)	1081
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	1344
BstV1I	GCAGC	4 cut(s)	324, 352, 783, 786
BstV2I	GAAGAC	2 cut(s)	1079, 1166
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	453, 628, 760, 865, 1318
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 561
BveI	ACCTGC	2 cut(s)	907, 1297
Cac8I	GCNNGC	3 cut(s)	78, 514, 1332
CfoI	GCGC	1 cut(s)	896
Cfr10I	RCCGGY	2 cut(s)	1022, 1330
Cfr13I	GGNCC	1 cut(s)	1375
CseI	GACGC	1 cut(s)	1350
CsiI	ACCWGGT	1 cut(s)	1081
Csp6I	GTAC	3 cut(s)	115, 320, 1391
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	6 cut(s)	135, 197, 491, 810, 1355, 1388
CviQI	GTAC	3 cut(s)	115, 320, 1391
DdeI	CTNAG	4 cut(s)	126, 522, 599, 707
DpnI	GATC	2 cut(s)	6, 195
DpnII	GATC	2 cut(s)	4, 193
DraI	TTTAAA	3 cut(s)	379, 1321, 1365
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	449, 1417
EarI	CTCTTC	2 cut(s)	449, 1417
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	1375
Eco57I	CTGAAG	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	1081
EcoRV	GATATC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	6 cut(s)	138, 200, 494, 813, 1358, 1391
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FatI	CATG	6 cut(s)	134, 196, 490, 809, 1354, 1387
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
FokI	GGATG	5 cut(s)	460, 635, 767, 872, 1325
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
FspBI	CTAG	4 cut(s)	264, 632, 914, 1097
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	5 cut(s)	363, 486, 592, 1023, 1331
HgaI	GACGC	1 cut(s)	1350
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	6 cut(s)	138, 200, 494, 813, 1358, 1391
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	8 cut(s)	388, 558, 1279, 1346, 1397, 1406, 1418, 1424
HpaII	CCGG	5 cut(s)	363, 486, 592, 1023, 1331
HphI	GGTGA	2 cut(s)	988, 1071
Hpy166II	GTNNAC	1 cut(s)	1051
Hpy188I	TCNGA	7 cut(s)	822, 1217, 1340, 1402, 1417, 1423, 1429
Hpy188III	TCNNGA	6 cut(s)	297, 445, 470, 486, 1091, 1115
Hpy8I	GTNNAC	1 cut(s)	1051
HpyAV	CCTTC	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	182, 340, 405, 581, 1006, 1169, 1358
HpyF3I	CTNAG	4 cut(s)	126, 522, 599, 707
Hsp92II	CATG	6 cut(s)	138, 200, 494, 813, 1358, 1391
HspAI	GCGC	1 cut(s)	894
Kpn2I	TCCGGA	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	1330
KroNI	GCCGGC	1 cut(s)	1332
Kzo9I	GATC	2 cut(s)	4, 193
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	324, 352, 783, 786
LweI	GCATC	1 cut(s)	568
MabI	ACCWGGT	1 cut(s)	1081
MaeI	CTAG	4 cut(s)	264, 632, 914, 1097
MaeIII	GTNAC	7 cut(s)	40, 104, 204, 545, 568, 1018, 1195
MalI	GATC	2 cut(s)	6, 195
MboI	GATC	2 cut(s)	4, 193
MboII	GAAGA	7 cut(s)	458, 466, 1079, 1136, 1171, 1274, 1404
MfeI	CAATTG	3 cut(s)	177, 406, 663
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	5 cut(s)	382, 1340, 1400, 1412, 1418
MmeI	TCCRAC	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	1330
MslI	CAYNNNNRTG	2 cut(s)	165, 814
MspI	CCGG	5 cut(s)	363, 486, 592, 1023, 1331
MspR9I	CCNGG	1 cut(s)	1083
MunI	CAATTG	3 cut(s)	177, 406, 663
Mva1269I	GAATGC	1 cut(s)	1169
MvaI	CCWGG	1 cut(s)	1083
MvnI	CGCG	1 cut(s)	1344
NaeI	GCCGGC	1 cut(s)	1332
NdeII	GATC	2 cut(s)	4, 193
NgoMIV	GCCGGC	1 cut(s)	1330
NlaIII	CATG	6 cut(s)	138, 200, 494, 813, 1358, 1391
NlaIV	GGNNCC	3 cut(s)	596, 781, 1377
NmuCI	GTSAC	3 cut(s)	104, 545, 568
NspI	RCATGY	2 cut(s)	494, 1358
NspV	TTCGAA	1 cut(s)	928
PaqCI	CACCTGC	1 cut(s)	907
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	1169
PdiI	GCCGGC	1 cut(s)	1332
PfeI	GAWTC	3 cut(s)	558, 1279, 1397
PkrI	GCNGC	6 cut(s)	221, 262, 339, 342, 798, 801
PleI	GAGTC	5 cut(s)	382, 1340, 1400, 1412, 1418
PpsI	GAGTC	5 cut(s)	382, 1340, 1400, 1412, 1418
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	1081
PspGI	CCWGG	1 cut(s)	1081
PspN4I	GGNNCC	3 cut(s)	596, 781, 1377
PspPI	GGNCC	1 cut(s)	1375
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	3 cut(s)	116, 321, 1392
RsaNI	GTAC	3 cut(s)	115, 320, 1391
RseI	CAYNNNNRTG	2 cut(s)	165, 814
SapI	GCTCTTC	1 cut(s)	449
SatI	GCNGC	6 cut(s)	220, 261, 338, 341, 797, 800
Sau3AI	GATC	2 cut(s)	4, 193
Sau96I	GGNCC	1 cut(s)	1375
SchI	GAGTC	5 cut(s)	382, 1340, 1400, 1412, 1418
ScrFI	CCNGG	1 cut(s)	1083
SduI	GDGCHC	1 cut(s)	127
SexAI	ACCWGGT	1 cut(s)	1081
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	928
SinI	GGWCC	1 cut(s)	1375
SmiI	ATTTAAAT	1 cut(s)	1321
SmiMI	CAYNNNNRTG	2 cut(s)	165, 814
SmlI	CTYRAG	2 cut(s)	527, 1268
SmoI	CTYRAG	2 cut(s)	527, 1268
SpeI	ACTAGT	1 cut(s)	631
SsiI	CCGC	3 cut(s)	220, 261, 1130
SspMI	CTAG	4 cut(s)	264, 632, 914, 1097
StyD4I	CCNGG	1 cut(s)	1081
SwaI	ATTTAAAT	1 cut(s)	1321
TaqI	TCGA	2 cut(s)	607, 928
TatI	WGTACW	1 cut(s)	1390
TauI	GCSGC	2 cut(s)	222, 263
TfiI	GAWTC	3 cut(s)	558, 1279, 1397
TscAI	CASTG	2 cut(s)	87, 568
TseFI	GTSAC	3 cut(s)	104, 545, 568
TseI	GCWGC	4 cut(s)	337, 340, 796, 799
Tsp45I	GTSAC	3 cut(s)	104, 545, 568
TspDTI	ATGAA	6 cut(s)	200, 452, 1045, 1095, 1222, 1376
TspRI	CASTG	2 cut(s)	87, 568
VpaK11BI	GGWCC	1 cut(s)	1375
XapI	RAATTY	3 cut(s)	992, 1061, 1101
XceI	RCATGY	2 cut(s)	494, 1358
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	4 cut(s)	264, 632, 914, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.