Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Reverse (-)

61330532 .. 61331628

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTCTAGAAGTACAAGTTATAGCAAATTACTCCAGTATTTTCTTAGCCTGTCTCGTATTGAAAGGCTCACAATTGATGGTTGCCTTTTAAAGCAGTGTGTAAATTCCTTCCCGATGGAGCTGCCTGAACCGTGTCCATGTCTGAACTTTCTTTCTATAAGCATGCGCTCGAATAATTTGAACGACATTTTAATTGCTATGTGTCTTCTGAGAAGCTCACCTGCTCTACGAGTTCGCAAAAAAAATAAGGCTGCTGATGGAGAACAAGCTACCAATTGGTTAAATAACAATCGGCTTTGGGAATTCACTCAACTGCGAAGTTTGAAATTAACCGGCCTCTATGGTGTTACTGGAGAAGTAGACTTACTTGAATATCTGTTTTTAAGCTCCCCTGCTCTTCAAGAACTAGAAATTTCGTTTAGAGACAACAATTTTCGATTAGATGCTGCTGCTGTGGGAGATTACAGCAATCGAAATTGCACATTCAACCAACTGAGAGTTATAAAAGTAACCAACTTTTGTGGTGTCAAAGCTGAAGCAGGTTTCATCGGATTTCTGCTTTCAAGTTCACCTATGCTCAAGACGATGACTCTTCAGCCTGATTCTACTGAAGTTTCTTGGGAAGTACTTAAGGTGGTGACCGAGTTCAAGCGCGATTCAGGGCATGCTGAGTTAAATTTGTTGGACCCATTAAGTCCTTTGAGGGAGTCTTATAATGGCTCCTATACTGACTGGTACCTCCGCACCAAGGCCTCCTCTGATGACTCTTCTGATGAGTCCCTTGATGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

266

Amino Acids

29.93

Weight (kDa)

5.15

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	506, 717
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	2 cut(s)	232, 533
Acc65I	GGTACC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	738
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	657
AciI	CCGC	1 cut(s)	745
AcsI	RAATTY	4 cut(s)	106, 305, 414, 679
AcuI	CTGAAG	3 cut(s)	558, 581, 633
AfaI	GTAC	3 cut(s)	16, 630, 740
AfiI	CCNNNNNNNGG	1 cut(s)	751
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	8 cut(s)	65, 184, 328, 374, 404, 490, 567, 652
AluBI	AGCT	5 cut(s)	124, 219, 272, 390, 536
AluI	AGCT	5 cut(s)	124, 219, 272, 390, 536
Alw26I	GTCTC	2 cut(s)	60, 420
AoxI	GGCC	2 cut(s)	337, 753
ApeKI	GCWGC	4 cut(s)	124, 254, 449, 452
ApoI	RAATTY	4 cut(s)	106, 305, 414, 679
Asp718I	GGTACC	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	171, 657
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	213, 564, 652
AvaII	GGWCC	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	738
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	111, 241, 436, 439
BccI	CCATC	3 cut(s)	74, 112, 254
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BcoDI	GTCTC	2 cut(s)	60, 420
BfaI	CTAG	2 cut(s)	9, 410
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	2 cut(s)	232, 533
BisI	GCNGC	4 cut(s)	125, 255, 450, 453
BlsI	GCNGC	4 cut(s)	126, 256, 451, 454
BmcAI	AGTACT	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	3 cut(s)	690, 724, 740
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	20, 375
BpuEI	CTTGAG	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	37, 358, 740
BseDI	CCNNGG	1 cut(s)	750
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMII	CTCAG	3 cut(s)	203, 488, 663
BseNI	ACTGG	3 cut(s)	37, 358, 740
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	4 cut(s)	111, 241, 436, 439
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	339, 755
BshNI	GGYRCC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmAI	GTCTC	2 cut(s)	60, 420
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	339, 755
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	2 cut(s)	339, 755
BspCNI	CTCAG	3 cut(s)	204, 489, 664
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	690, 724, 740
BspMI	ACCTGC	2 cut(s)	232, 533
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	738
BspTI	CTTAAG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	3 cut(s)	37, 358, 740
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	750
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	3 cut(s)	405, 600, 775
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	167, 669
BstDEI	CTNAG	4 cut(s)	47, 212, 497, 672
BstEII	GGTNACC	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	657
BstHHI	GCGC	2 cut(s)	171, 657
BstMAI	GTCTC	2 cut(s)	60, 420
BstNSI	RCATGY	2 cut(s)	169, 671
BstPI	GGTNACC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	111, 241, 436, 439
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	339, 755
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	2 cut(s)	232, 533
Cac8I	GCNNGC	2 cut(s)	167, 669
CfoI	GCGC	2 cut(s)	171, 657
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	3 cut(s)	15, 629, 739
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	3 cut(s)	141, 166, 668
CviQI	GTAC	3 cut(s)	15, 629, 739
DdeI	CTNAG	4 cut(s)	47, 212, 497, 672
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	3 cut(s)	405, 600, 775
EarI	CTCTTC	3 cut(s)	405, 600, 775
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	3 cut(s)	558, 581, 633
Eco91I	GGTNACC	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	3 cut(s)	144, 169, 671
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	3 cut(s)	140, 165, 667
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	125, 255, 450, 453
Fsp4HI	GCNGC	4 cut(s)	125, 255, 450, 453
FspBI	CTAG	2 cut(s)	9, 410
GlaI	GCGC	2 cut(s)	170, 656
GluI	GCNGC	4 cut(s)	125, 255, 450, 453
GsuI	CTGGAG	2 cut(s)	20, 375
HaeIII	GGCC	2 cut(s)	339, 755
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	2 cut(s)	171, 657
Hin1II	CATG	3 cut(s)	144, 169, 671
Hin6I	GCGC	2 cut(s)	169, 655
HinP1I	GCGC	2 cut(s)	169, 655
HinfI	GANTC	6 cut(s)	592, 605, 659, 710, 767, 779
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	213, 564, 652
Hpy166II	GTNNAC	2 cut(s)	364, 572
Hpy188I	TCNGA	5 cut(s)	147, 213, 554, 763, 775
Hpy188III	TCNNGA	4 cut(s)	9, 115, 404, 583
Hpy8I	GTNNAC	2 cut(s)	364, 572
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	483
HpyF3I	CTNAG	4 cut(s)	47, 212, 497, 672
Hsp92II	CATG	3 cut(s)	144, 169, 671
HspAI	GCGC	2 cut(s)	169, 655
KpnI	GGTACC	1 cut(s)	742
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	121, 395, 728
Lsp1109I	GCAGC	4 cut(s)	111, 241, 436, 439
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	9, 410
MaeIII	GTNAC	3 cut(s)	349, 511, 640
MboII	GAAGA	4 cut(s)	200, 392, 587, 762
MfeI	CAATTG	2 cut(s)	75, 277
MlyI	GAGTC	4 cut(s)	586, 719, 761, 788
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	5 cut(s)	350, 699, 752, 766, 769
MseI	TTAA	8 cut(s)	92, 194, 284, 332, 386, 633, 677, 695
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	336
MunI	CAATTG	2 cut(s)	75, 277
MvnI	CGCG	1 cut(s)	657
NlaIII	CATG	3 cut(s)	144, 169, 671
NlaIV	GGNNCC	3 cut(s)	690, 724, 740
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	2 cut(s)	169, 671
PaeI	GCATGC	2 cut(s)	169, 671
PaqCI	CACCTGC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	605, 659
PkrI	GCNGC	4 cut(s)	126, 256, 451, 454
PleI	GAGTC	4 cut(s)	586, 718, 761, 787
PpsI	GAGTC	4 cut(s)	586, 718, 761, 787
PsiI	TTATAA	2 cut(s)	506, 717
PspEI	GGTNACC	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	690, 724, 740
PspPI	GGNCC	1 cut(s)	688
RsaI	GTAC	3 cut(s)	16, 630, 740
RsaNI	GTAC	3 cut(s)	15, 629, 739
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	8 cut(s)	92, 194, 284, 332, 386, 633, 677, 695
SatI	GCNGC	4 cut(s)	125, 255, 450, 453
Sau96I	GGNCC	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	630
SchI	GAGTC	4 cut(s)	586, 719, 761, 788
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	688
SmlI	CTYRAG	2 cut(s)	581, 632
SmoI	CTYRAG	2 cut(s)	581, 632
SphI	GCATGC	2 cut(s)	169, 671
SseBI	AGGCCT	1 cut(s)	755
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	2 cut(s)	9, 410
StuI	AGGCCT	1 cut(s)	755
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	173, 439, 475
TaqII	GACCGA	1 cut(s)	659
TatI	WGTACW	2 cut(s)	14, 628
TfiI	GAWTC	2 cut(s)	605, 659
Tru1I	TTAA	8 cut(s)	92, 194, 284, 332, 386, 633, 677, 695
Tru9I	TTAA	8 cut(s)	92, 194, 284, 332, 386, 633, 677, 695
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	4 cut(s)	124, 254, 449, 452
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	4 cut(s)	106, 305, 414, 679
XbaI	TCTAGA	1 cut(s)	8
XceI	RCATGY	2 cut(s)	169, 671
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	9, 410
ZrmI	AGTACT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.