Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

5769935 .. 5772004

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGAAATAAAACAAACCGAGAACGAGTATGAAAGGGAGTTGGAGCTGGACAAATTAAGCAACTTACCAAGTGATGTTACAGAAAAAATCCTATCATATTTGCCAACTAGAGAAGCAGTAAGGACCAGTTTTTTATCAAGAAATTGGAGGCACAAATGGGTTACTGTTCCGCGTCTTATGTTTGATGATAAAACAGCCAACCGCAACAGTTTTCAAATACAAAGAGTTATCGATCATGTTCTTTTACTTCACAAAGGCCCTGTAGACTCTTTCAAGTTGTCCACAGTGATATATCTAACCAATAATGAGTTTGATAGATGGATTTGGTATCTATCAAGATTCGCTATCAAAGAGTTCATACTGGAAAGAAGATATCCATCCGACAATTACAATGTCTCTTCCCATCTGTATTCTTACAAAGATCTGACTCACTTGGAGTTAAGCAATTGTTCTCTGAATCCCCCTTTGACATTCAAAGGCTTTGCGACGTTGAAGAACCTCAACATTCAAAATGTCAGTGTGGCAAAAGATGTGTTGGAAAAAATTATTGTTGGTTGTCCACTGCTTGAGAGAATGATTCTATGCGACTTAGAGAGTGTCGACATTCTCAATGTTGATGCACCAAATCTCCAATTCCTTAAAGTTGTTGGTGTTTTTAAAGAAGTTAAGCTTCAGAATGTCCCAAATCTAGTTCATGTTTCAATCGGCCAAAAAAGAATCGACTACAAAGAGGTTTCTAGAAGAAATTCTAGCAAATTGCTCCAGTATTTTCTTAGCCTGCCTCGTATCGAAAGGCTCACTATTGAAGGTTGCCTTTTAGAGCAGTGTGTTGTTAATTCCTTTTCCTTGCATACGGAGCTGCCTGAACCGTATCCATGTCTGAATTTTCTTTCTATAAGCATGCGCTTGAATAGTTTGGACGACATTTTAGTTGCTATGTATCTTCTGAGAAGCTCACCTGCTATACAAGTGCTAGAAATCGAGGTCCGCCAAGAGTCTAATGCTGAAGAACAAGCAACCAATTGGTTAAATAACAATCGGCTTTGGGAATTCACTCAACTGCGACGTCTGAAAGTAACCGGCTTCTCTGGTGTTACCGGAGAAGTAGACTTCCTTGACTATCTATTTTCACGCTTCCCTGCTCTTCAAGAAATAGAAATTTCGTTTAGAGACTACACAAATATGGGGAAGGGATTAGATGCTGCGGCTGGGGGAGATTATAGCAATCGAAATTGGTCGCTCAACCAGCTGAGAATCATGAAAGTAACCAATGTGAGATATGAAGCAAGTTTCATCAGATTTCTCCTTTCAAGTTCACCTATGCTAAACACGATGACTCTTCAGCCTGTTTCTGCCGGAATTTCTTGGGAACTACTTGAGTTATTGGTGAAGGAGTTCAAGCGCTATTCGCATGCTGAGTTAAAACTCTTGAAACCATTATCGAGCGAGTCCTATAATAATGACTTCTATTCTGATGACGTCCGGTGCATGTGCACCAGCGTCCCCGCGGTAGCTTCAGGCTGGGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

511

Amino Acids

59.11

Weight (kDa)

6.15

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 56	2.8e-09	F-box domain
LRR_At1g61320_AtMIF1	PF23622	90 - 386	1.8e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	105 - 327	2.2e-15	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	967
AatII	GACGTC	2 cut(s)	1069, 1482
Acc36I	ACCTGC	1 cut(s)	967
AccI	GTMKAC	3 cut(s)	264, 600, 1107
AccII	CGCG	2 cut(s)	172, 1508
AciI	CCGC	6 cut(s)	170, 202, 988, 1205, 1506, 1508
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	5 cut(s)	745, 883, 1049, 1158, 1359
AcuI	CTGAAG	4 cut(s)	656, 1026, 1325, 1500
AcyI	GRCGYC	2 cut(s)	1066, 1479
AfeI	AGCGCT	1 cut(s)	1403
AluBI	AGCT	6 cut(s)	46, 670, 859, 954, 1249, 1514
AluI	AGCT	6 cut(s)	46, 670, 859, 954, 1249, 1514
Alw21I	GWGCWC	1 cut(s)	1496
Alw26I	GTCTC	2 cut(s)	400, 1164
Alw44I	GTGCAC	1 cut(s)	1492
Aor51HI	AGCGCT	1 cut(s)	1403
AoxI	GGCC	2 cut(s)	256, 706
ApaLI	GTGCAC	1 cut(s)	1492
ApeKI	GCWGC	2 cut(s)	859, 1202
ApoI	RAATTY	5 cut(s)	745, 883, 1049, 1158, 1359
Asp700I	GAANNNNTTC	2 cut(s)	745, 1394
AspLEI	GCGC	2 cut(s)	906, 1404
AspS9I	GGNCC	3 cut(s)	123, 257, 985
AsuHPI	GGTGA	3 cut(s)	948, 1308, 1399
AvaII	GGWCC	2 cut(s)	123, 985
BaeGI	GKGCMC	1 cut(s)	1496
Bbv12I	GWGCWC	1 cut(s)	1496
BbvI	GCAGC	2 cut(s)	846, 1189
BccI	CCATC	3 cut(s)	312, 385, 411
BciVI	GTATCC	1 cut(s)	882
BcoDI	GTCTC	2 cut(s)	400, 1164
BfaI	CTAG	5 cut(s)	108, 689, 738, 750, 974
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	1405
BfuAI	ACCTGC	1 cut(s)	967
BfuI	GTATCC	1 cut(s)	882
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	3 cut(s)	860, 1203, 1206
BlsI	GCNGC	3 cut(s)	861, 1204, 1207
Bme18I	GGWCC	2 cut(s)	123, 985
BmgT120I	GGNCC	3 cut(s)	123, 257, 985
BmsI	GCATC	2 cut(s)	607, 1189
BpmI	CTGGAG	1 cut(s)	746
BpuEI	CTTGAG	2 cut(s)	587, 1397
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	376
BsaHI	GRCGYC	2 cut(s)	1066, 1479
BsaJI	CCNNGG	1 cut(s)	1506
BsaWI	WCCGGW	2 cut(s)	1097, 1482
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bse118I	RCCGGY	1 cut(s)	1079
Bse1I	ACTGG	3 cut(s)	126, 366, 763
Bse8I	GATNNNNATC	1 cut(s)	376
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	1506
BseGI	GGATG	1 cut(s)	377
BseJI	GATNNNNATC	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	938, 1241, 1407
BseNI	ACTGG	3 cut(s)	126, 366, 763
BseSI	GKGCMC	1 cut(s)	1496
BseXI	GCAGC	2 cut(s)	846, 1189
BseYI	CCCAGC	2 cut(s)	1208, 1521
Bsh1236I	CGCG	2 cut(s)	172, 1508
BshFI	GGCC	2 cut(s)	258, 708
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	1496
BsiSI	CCGG	4 cut(s)	1080, 1098, 1356, 1483
BslFI	GGGAC	2 cut(s)	665, 1487
BsmAI	GTCTC	2 cut(s)	400, 1164
BsmFI	GGGAC	2 cut(s)	665, 1487
BsnI	GGCC	2 cut(s)	258, 708
Bsp1286I	GDGCHC	1 cut(s)	1496
Bsp143I	GATC	2 cut(s)	232, 421
BspACI	CCGC	6 cut(s)	170, 202, 988, 1205, 1506, 1508
BspANI	GGCC	2 cut(s)	258, 708
BspCNI	CTCAG	3 cut(s)	939, 1242, 1408
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	172, 1508
BspHI	TCATGA	1 cut(s)	1257
BspMI	ACCTGC	1 cut(s)	967
BspQI	GCTCTTC	1 cut(s)	1149
BsrFI	RCCGGY	1 cut(s)	1079
BsrI	ACTGG	3 cut(s)	126, 366, 763
BssAI	RCCGGY	1 cut(s)	1079
BssECI	CCNNGG	1 cut(s)	1506
BssMI	GATC	2 cut(s)	232, 421
BssNI	GRCGYC	2 cut(s)	1066, 1479
Bst4CI	ACNGT	4 cut(s)	166, 209, 286, 870
Bst6I	CTCTTC	3 cut(s)	403, 1149, 1344
BstACI	GRCGYC	2 cut(s)	1066, 1479
BstC8I	GCNNGC	3 cut(s)	779, 902, 1413
BstDEI	CTNAG	5 cut(s)	589, 773, 947, 1250, 1416
BstDSI	CCRYGG	1 cut(s)	1506
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	2 cut(s)	172, 1508
BstH2I	RGCGCY	1 cut(s)	1405
BstHHI	GCGC	2 cut(s)	906, 1404
BstKTI	GATC	2 cut(s)	235, 424
BstMAI	GTCTC	2 cut(s)	400, 1164
BstMBI	GATC	2 cut(s)	232, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	856, 1246, 1408
BstNSI	RCATGY	3 cut(s)	904, 1415, 1492
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	1496
BstUI	CGCG	2 cut(s)	172, 1508
BstV1I	GCAGC	2 cut(s)	846, 1189
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	2 cut(s)	258, 708
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	1506
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	2 cut(s)	560, 830
BtsIMutI	CAGTG	4 cut(s)	291, 523, 560, 830
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	3 cut(s)	779, 902, 1413
CciI	TCATGA	1 cut(s)	1257
CfoI	GCGC	2 cut(s)	906, 1404
Cfr10I	RCCGGY	1 cut(s)	1079
Cfr13I	GGNCC	3 cut(s)	123, 257, 985
Cfr42I	CCGCGG	1 cut(s)	1509
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	2 cut(s)	161, 1489
CviAII	CATG	7 cut(s)	236, 695, 876, 901, 1258, 1412, 1489
DdeI	CTNAG	5 cut(s)	589, 773, 947, 1250, 1416
DpnI	GATC	2 cut(s)	234, 423
DpnII	GATC	2 cut(s)	232, 421
DraI	TTTAAA	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	3 cut(s)	403, 1149, 1344
EarI	CTCTTC	3 cut(s)	403, 1149, 1344
EciI	GGCGGA	1 cut(s)	977
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	123, 985
Eco47III	AGCGCT	1 cut(s)	1403
Eco57I	CTGAAG	4 cut(s)	656, 1026, 1325, 1500
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	1049
EcoRV	GATATC	1 cut(s)	374
FaeI	CATG	7 cut(s)	239, 698, 879, 904, 1261, 1415, 1492
FalI	AAGNNNNNCTT	4 cut(s)	654, 686, 798, 830
FaqI	GGGAC	2 cut(s)	665, 1487
FatI	CATG	7 cut(s)	235, 694, 875, 900, 1257, 1411, 1488
FauI	CCCGC	1 cut(s)	1513
FauNDI	CATATG	1 cut(s)	1529
FblI	GTMKAC	3 cut(s)	264, 600, 1107
Fnu4HI	GCNGC	3 cut(s)	860, 1203, 1206
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	860, 1203, 1206
FspBI	CTAG	5 cut(s)	108, 689, 738, 750, 974
GlaI	GCGC	2 cut(s)	905, 1403
GluI	GCNGC	3 cut(s)	860, 1203, 1206
GsaI	CCCAGC	2 cut(s)	1212, 1525
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	1 cut(s)	1405
HaeIII	GGCC	2 cut(s)	258, 708
HapII	CCGG	4 cut(s)	1080, 1098, 1356, 1483
HgaI	GACGC	2 cut(s)	161, 1489
HhaI	GCGC	2 cut(s)	906, 1404
Hin1I	GRCGYC	2 cut(s)	1066, 1479
Hin1II	CATG	7 cut(s)	239, 698, 879, 904, 1261, 1415, 1492
Hin6I	GCGC	2 cut(s)	904, 1402
HinP1I	GCGC	2 cut(s)	904, 1402
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	668
HpaII	CCGG	4 cut(s)	1080, 1098, 1356, 1483
HphI	GGTGA	3 cut(s)	948, 1308, 1399
Hpy166II	GTNNAC	7 cut(s)	265, 282, 560, 601, 1108, 1316, 1494
Hpy188I	TCNGA	9 cut(s)	382, 426, 456, 675, 882, 948, 1071, 1298, 1474
Hpy188III	TCNNGA	6 cut(s)	138, 336, 738, 1148, 1258, 1429
Hpy8I	GTNNAC	7 cut(s)	265, 282, 560, 601, 1108, 1316, 1494
Hpy99I	CGWCG	2 cut(s)	490, 1068
HpyAV	CCTTC	3 cut(s)	800, 1183, 1384
HpyCH4III	ACNGT	4 cut(s)	166, 209, 286, 870
HpyCH4IV	ACGT	3 cut(s)	488, 1066, 1479
HpyCH4V	TGCA	4 cut(s)	620, 850, 1488, 1494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	856, 1246, 1408
HpyF3I	CTNAG	5 cut(s)	589, 773, 947, 1250, 1416
HpySE526I	ACGT	3 cut(s)	488, 1066, 1479
Hsp92I	GRCGYC	2 cut(s)	1066, 1479
Hsp92II	CATG	7 cut(s)	239, 698, 879, 904, 1261, 1415, 1492
HspAI	GCGC	2 cut(s)	904, 1402
KspI	CCGCGG	1 cut(s)	1509
Kzo9I	GATC	2 cut(s)	232, 421
LguI	GCTCTTC	1 cut(s)	1149
LmnI	GCTCC	3 cut(s)	43, 765, 856
Lsp1109I	GCAGC	2 cut(s)	846, 1189
LweI	GCATC	2 cut(s)	607, 1189
MaeI	CTAG	5 cut(s)	108, 689, 738, 750, 974
MaeII	ACGT	3 cut(s)	488, 1066, 1479
MaeIII	GTNAC	5 cut(s)	76, 160, 1075, 1093, 1264
MalI	GATC	2 cut(s)	234, 423
MboI	GATC	2 cut(s)	232, 421
MboII	GAAGA	8 cut(s)	381, 390, 505, 753, 935, 1019, 1136, 1331
MfeI	CAATTG	2 cut(s)	445, 1021
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	1496
MlyI	GAGTC	5 cut(s)	260, 421, 1004, 1330, 1457
MmeI	TCCRAC	3 cut(s)	21, 405, 516
MnlI	CCTC	5 cut(s)	141, 509, 724, 792, 976
MroXI	GAANNNNTTC	2 cut(s)	745, 1394
MseI	TTAA	8 cut(s)	56, 440, 639, 657, 666, 834, 1028, 1421
MslI	CAYNNNNRTG	1 cut(s)	1181
MspA1I	CMGCKG	2 cut(s)	1249, 1508
MspI	CCGG	4 cut(s)	1080, 1098, 1356, 1483
MunI	CAATTG	2 cut(s)	445, 1021
MvnI	CGCG	2 cut(s)	172, 1508
MwoI	GCNNNNNNNGC	3 cut(s)	856, 1246, 1408
NdeI	CATATG	1 cut(s)	1529
NdeII	GATC	2 cut(s)	232, 421
NlaIII	CATG	7 cut(s)	239, 698, 879, 904, 1261, 1415, 1492
NspI	RCATGY	3 cut(s)	904, 1415, 1492
PaeI	GCATGC	2 cut(s)	904, 1415
PagI	TCATGA	1 cut(s)	1257
PaqCI	CACCTGC	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	1149
PdmI	GAANNNNTTC	2 cut(s)	745, 1394
PfeI	GAWTC	5 cut(s)	339, 457, 577, 717, 1254
PkrI	GCNGC	3 cut(s)	861, 1204, 1207
PleI	GAGTC	5 cut(s)	260, 421, 1003, 1330, 1456
PpsI	GAGTC	5 cut(s)	260, 421, 1003, 1330, 1456
PspFI	CCCAGC	2 cut(s)	1208, 1521
PspPI	GGNCC	3 cut(s)	123, 257, 985
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	1249
RseI	CAYNNNNRTG	1 cut(s)	1181
SacII	CCGCGG	1 cut(s)	1509
SalI	GTCGAC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	1149
SaqAI	TTAA	8 cut(s)	56, 440, 639, 657, 666, 834, 1028, 1421
SatI	GCNGC	3 cut(s)	860, 1203, 1206
Sau3AI	GATC	2 cut(s)	232, 421
Sau96I	GGNCC	3 cut(s)	123, 257, 985
SchI	GAGTC	5 cut(s)	260, 421, 1004, 1330, 1457
SduI	GDGCHC	1 cut(s)	1496
SfaNI	GCATC	2 cut(s)	607, 1189
SfcI	CTRYAG	1 cut(s)	261
Sfr303I	CCGCGG	1 cut(s)	1509
SgrBI	CCGCGG	1 cut(s)	1509
SinI	GGWCC	2 cut(s)	123, 985
SmiMI	CAYNNNNRTG	1 cut(s)	1181
SmlI	CTYRAG	2 cut(s)	566, 1376
SmoI	CTYRAG	2 cut(s)	566, 1376
SphI	GCATGC	2 cut(s)	904, 1415
SsiI	CCGC	6 cut(s)	170, 202, 988, 1205, 1506, 1508
SspMI	CTAG	5 cut(s)	108, 689, 738, 750, 974
TaaI	ACNGT	4 cut(s)	166, 209, 286, 870
TaiI	ACGT	3 cut(s)	491, 1069, 1482
TaqI	TCGA	7 cut(s)	231, 600, 720, 789, 981, 1228, 1442
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	5 cut(s)	339, 457, 577, 717, 1254
Tru1I	TTAA	8 cut(s)	56, 440, 639, 657, 666, 834, 1028, 1421
Tru9I	TTAA	8 cut(s)	56, 440, 639, 657, 666, 834, 1028, 1421
TscAI	CASTG	4 cut(s)	291, 523, 567, 830
TseI	GCWGC	2 cut(s)	859, 1202
TspDTI	ATGAA	6 cut(s)	45, 346, 683, 1274, 1282, 1296
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	4 cut(s)	291, 523, 567, 830
VneI	GTGCAC	1 cut(s)	1492
VpaK11BI	GGWCC	2 cut(s)	123, 985
XapI	RAATTY	5 cut(s)	745, 883, 1049, 1158, 1359
XbaI	TCTAGA	1 cut(s)	737
XceI	RCATGY	3 cut(s)	904, 1415, 1492
XmiI	GTMKAC	3 cut(s)	264, 600, 1107
XmnI	GAANNNNTTC	2 cut(s)	745, 1394
XspI	CTAG	5 cut(s)	108, 689, 738, 750, 974
ZraI	GACGTC	2 cut(s)	1067, 1480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.