Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

30729768 .. 30731596

Gene Structure 1829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGATCAGTTGGATAAATTAGGCAACTTACCAACTGGCGTTACACACCAGATTTTGTCATACTTACCTATCAAGCAGGCAGTGAGGACAAGTATTTTATCGAGTGAGTGGAGGTACAAATGGGCTCAGCTTCCATGTCTTGTGTTTGATGATAAAAGTGGATATCCAATTGCAAAGGTTGTGGATCATGTGCTGTTACTTCATAGTGGCCGCATTAACACTTTCAAGCTTTCTACTTGTAACTATCCAGCCCATAGGGATATAGATAAGTGGATTGCTCATCTATCAAGAAACAATGTCAAAGTGTTCGTACTGAAAGTATGGAAGCAGTCTCCCTACAATGTGTTTTCCGGCTTCTTTTCTTTTAAAGATTTGACTCATTTAGAGTTATGCAATTGTTTGCTTAAACCTCCAAGGACATTCAAAGGCTTCAGGATGTTGAAGAGCCTTCATTTTCAAGGAGTTAATGTGTCCGGATATGTGTTGGGGAAACTAATTGCTTGCTGTCCTCGGCTTGAGAGAATAATTCTATGTGACTTACGGTTACAGGGTATCACTGATGTTACTATTGATGCACCAAGCATCCAGTTCCTTAAAGTTCAAGGCAGTTTTGAGGATGTTCTACTTACGAATACCTTCAATCTTGTTGATGTTTCAATTGACTGGAAACAAGGTTCTAGGATCAGTTCTGGCAAATTGCTCAGATATTTTTTCGAACTGCCTTGTGTTGAAAGACTCACACTTGAGGACAGCTTTTTAGAGTGTGCTGTTGGTTCCTTGACCAAGAAGCTACCTAAACCATGTCCATGTCTGAACTTTCTTTCTATAAGCATACGCTTGAATAAGTCAGAGGAGATTTTAACTGCTATGCACCTTCTGAGAAGCGCACCTGCTCTACAAGAACTAGACATTTTGGTACGAAAAGAAGTGGAGACTAATGATGGAGAAGCAACCTATTGTTCAAGTGACACACAGAATTGGGAAGTCACCCAACTGCGACGAGTGAAAGTAACTGGCTTCTCTGGTGTCAAAGCAGAAGTAGACTTCATCGAATTTCTGTTATTAACCTCACCTGGTCTTCAAGAACTAGAAATTTCATTTTGTCAAGATGTGAAAGAAGTGGACTTTTCTTGGCTAGATAACAACCTGAAGACTAGTGCATTCACCCAACTGCGAGTTGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCCCAAGTAGTTTTCATCACATTTCTGCTTTCAAACGCGACTCATTACAATGCAGATTTAAAGTTCTTGGACCCATCAAGTTCTGTACAGGATTCTGATGACTCATCATCTTACTCCGACTCTGATATGGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

449

Amino Acids

50.73

Weight (kDa)

6.75

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	67 - 177	6.1e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	88 - 304	1.7e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc36I	ACCTGC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	1 cut(s)	1247
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	3 cut(s)	12, 192, 689
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	1052, 1092
AcuI	CTGAAG	2 cut(s)	415, 1169
AfaI	GTAC	4 cut(s)	116, 312, 918, 1296
AhlI	ACTAGT	1 cut(s)	1154
AjnI	CCWGG	1 cut(s)	1072
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	4 cut(s)	130, 229, 753, 790
AluI	AGCT	4 cut(s)	130, 229, 753, 790
Alw26I	GTCTC	2 cut(s)	336, 926
AlwI	GGATC	3 cut(s)	12, 192, 689
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	1052, 1092
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	887
AspS9I	GGNCC	1 cut(s)	1279
AsuHPI	GGTGA	3 cut(s)	979, 1062, 1156
AsuII	TTCGAA	1 cut(s)	714
AvaII	GGWCC	1 cut(s)	1279
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	1070, 1157
BccI	CCATC	2 cut(s)	935, 1291
BciT130I	CCWGG	1 cut(s)	1074
BcoDI	GTCTC	2 cut(s)	336, 926
BcuI	ACTAGT	1 cut(s)	1154
BfaI	CTAG	5 cut(s)	678, 905, 1088, 1136, 1155
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	1 cut(s)	211
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	1074
Bme18I	GGWCC	1 cut(s)	1279
BmgT120I	GGNCC	1 cut(s)	1279
BmiI	GGNNCC	2 cut(s)	775, 1281
BmrFI	CCNGG	1 cut(s)	1074
BmsI	GCATC	2 cut(s)	562, 591
BpiI	GAAGAC	2 cut(s)	1070, 1157
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	536, 764
BsaJI	CCNNGG	2 cut(s)	413, 509
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse118I	RCCGGY	1 cut(s)	1190
Bse1I	ACTGG	4 cut(s)	40, 586, 668, 1018
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	1074
BseDI	CCNNGG	2 cut(s)	413, 509
BseGI	GGATG	3 cut(s)	441, 582, 622
BseMII	CTCAG	3 cut(s)	140, 715, 869
BseNI	ACTGG	4 cut(s)	40, 586, 668, 1018
BseRI	GAGGAG	1 cut(s)	866
Bsh1236I	CGCG	1 cut(s)	1247
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	351, 474, 1191
BsmAI	GTCTC	2 cut(s)	336, 926
BsmI	GAATGC	1 cut(s)	1160
BsnI	GGCC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	1294
Bsp143I	GATC	3 cut(s)	4, 184, 681
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	3 cut(s)	139, 714, 870
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	1247
BspLI	GGNNCC	2 cut(s)	775, 1281
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	3 cut(s)	12, 192, 689
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	1190
BsrGI	TGTACA	1 cut(s)	1294
BsrI	ACTGG	4 cut(s)	40, 586, 668, 1018
BssAI	RCCGGY	1 cut(s)	1190
BssECI	CCNNGG	2 cut(s)	413, 509
BssMI	GATC	3 cut(s)	4, 184, 681
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	1294
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	78, 502
BstDEI	CTNAG	3 cut(s)	126, 701, 878
BstF5I	GGATG	3 cut(s)	441, 582, 622
BstFNI	CGCG	1 cut(s)	1247
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	3 cut(s)	7, 187, 684
BstMAI	GTCTC	2 cut(s)	336, 926
BstMBI	GATC	3 cut(s)	4, 184, 681
BstNI	CCWGG	1 cut(s)	1074
BstSCI	CCNGG	1 cut(s)	1072
BstUI	CGCG	1 cut(s)	1247
BstV2I	GAAGAC	2 cut(s)	1070, 1157
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	441, 582, 622
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 555
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	78, 502
CfoI	GCGC	1 cut(s)	887
Cfr10I	RCCGGY	1 cut(s)	1190
Cfr13I	GGNCC	1 cut(s)	1279
CsiI	ACCWGGT	1 cut(s)	1072
Csp6I	GTAC	4 cut(s)	115, 311, 917, 1295
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	4 cut(s)	135, 188, 801, 807
CviQI	GTAC	4 cut(s)	115, 311, 917, 1295
DdeI	CTNAG	3 cut(s)	126, 701, 878
DpnI	GATC	3 cut(s)	6, 186, 683
DpnII	GATC	3 cut(s)	4, 184, 681
DraI	TTTAAA	2 cut(s)	367, 1269
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	413
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	1279
Eco57I	CTGAAG	2 cut(s)	415, 1169
EcoRII	CCWGG	1 cut(s)	1072
EcoRV	GATATC	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	138, 191, 804, 810
FatI	CATG	4 cut(s)	134, 187, 800, 806
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	3 cut(s)	448, 569, 629
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	5 cut(s)	678, 905, 1088, 1136, 1155
GlaI	GCGC	1 cut(s)	886
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	3 cut(s)	351, 474, 1191
HhaI	GCGC	1 cut(s)	887
Hin1II	CATG	4 cut(s)	138, 191, 804, 810
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	6 cut(s)	376, 735, 1249, 1301, 1310, 1328
HpaII	CCGG	3 cut(s)	351, 474, 1191
HphI	GGTGA	3 cut(s)	979, 1062, 1156
Hpy166II	GTNNAC	2 cut(s)	1042, 1123
Hpy188I	TCNGA	7 cut(s)	704, 813, 850, 879, 1306, 1327, 1333
Hpy188III	TCNNGA	5 cut(s)	288, 433, 474, 1082, 1106
Hpy8I	GTNNAC	2 cut(s)	1042, 1123
Hpy99I	CGWCG	1 cut(s)	1002
HpyAV	CCTTC	3 cut(s)	458, 646, 884
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4V	TGCA	6 cut(s)	173, 393, 575, 871, 1160, 1262
HpyF3I	CTNAG	3 cut(s)	126, 701, 878
Hsp92II	CATG	4 cut(s)	138, 191, 804, 810
HspAI	GCGC	1 cut(s)	885
Kpn2I	TCCGGA	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	4, 184, 681
LguI	GCTCTTC	1 cut(s)	437
LweI	GCATC	2 cut(s)	562, 591
MabI	ACCWGGT	1 cut(s)	1072
MaeI	CTAG	5 cut(s)	678, 905, 1088, 1136, 1155
MalI	GATC	3 cut(s)	6, 186, 683
MboI	GATC	3 cut(s)	4, 184, 681
MboII	GAAGA	3 cut(s)	454, 1070, 1162
MfeI	CAATTG	3 cut(s)	168, 394, 657
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	5 cut(s)	370, 729, 1243, 1304, 1322
MnlI	CCTC	8 cut(s)	78, 105, 420, 519, 607, 739, 844, 1078
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	8 cut(s)	216, 366, 405, 465, 594, 860, 1064, 1268
MslI	CAYNNNNRTG	2 cut(s)	805, 1257
MspI	CCGG	3 cut(s)	351, 474, 1191
MspR9I	CCNGG	1 cut(s)	1074
MunI	CAATTG	3 cut(s)	168, 394, 657
Mva1269I	GAATGC	1 cut(s)	1160
MvaI	CCWGG	1 cut(s)	1074
MvnI	CGCG	1 cut(s)	1247
NdeII	GATC	3 cut(s)	4, 184, 681
NlaIII	CATG	4 cut(s)	138, 191, 804, 810
NlaIV	GGNNCC	2 cut(s)	775, 1281
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	3 cut(s)	533, 965, 985
NspV	TTCGAA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	898
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	1160
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	1301
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	5 cut(s)	370, 729, 1243, 1304, 1322
PpsI	GAGTC	5 cut(s)	370, 729, 1243, 1304, 1322
Psp6I	CCWGG	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	2 cut(s)	775, 1281
PspPI	GGNCC	1 cut(s)	1279
RsaI	GTAC	4 cut(s)	116, 312, 918, 1296
RsaNI	GTAC	4 cut(s)	115, 311, 917, 1295
RseI	CAYNNNNRTG	2 cut(s)	805, 1257
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	8 cut(s)	216, 366, 405, 465, 594, 860, 1064, 1268
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	4, 184, 681
Sau96I	GGNCC	1 cut(s)	1279
SchI	GAGTC	5 cut(s)	370, 729, 1243, 1304, 1322
ScrFI	CCNGG	1 cut(s)	1074
SduI	GDGCHC	1 cut(s)	127
SexAI	ACCWGGT	1 cut(s)	1072
SfaNI	GCATC	2 cut(s)	562, 591
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	1 cut(s)	1279
SmiMI	CAYNNNNRTG	2 cut(s)	805, 1257
SmlI	CTYRAG	2 cut(s)	515, 743
SmoI	CTYRAG	2 cut(s)	515, 743
SpeI	ACTAGT	1 cut(s)	1154
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	5 cut(s)	678, 905, 1088, 1136, 1155
StyD4I	CCNGG	1 cut(s)	1072
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	101, 714, 1050
TatI	WGTACW	1 cut(s)	1294
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	1301
Tru1I	TTAA	8 cut(s)	216, 366, 405, 465, 594, 860, 1064, 1268
Tru9I	TTAA	8 cut(s)	216, 366, 405, 465, 594, 860, 1064, 1268
TscAI	CASTG	2 cut(s)	87, 562
TseFI	GTSAC	3 cut(s)	533, 965, 985
Tsp45I	GTSAC	3 cut(s)	533, 965, 985
TspDTI	ATGAA	5 cut(s)	191, 440, 1036, 1086, 1213
TspRI	CASTG	2 cut(s)	87, 562
VpaK11BI	GGWCC	1 cut(s)	1279
XapI	RAATTY	2 cut(s)	1052, 1092
XmiI	GTMKAC	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	5 cut(s)	678, 905, 1088, 1136, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.