Rorug03G0134800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008865
Physical Location & Seq
Reverse (-)
11038541 .. 11039439
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0134800.1

Sequence Viewer

Length: 564 bp
ATGGAGAGGAATCACTCCGTCAAAAAACTCGATCTTAAATGGACCTCCGACGATCAAATCAGTAGTTTGGGGCAGGCAAAGTCCTACGCCTGTACCTTCTGCAAGCGAGGCTTCTCGAATGCACAAGCTCTTGGGGGACACATGAACATTCATCGAAGAGATCGAGCCCGGATCAGACAGTACTCGGAAGATCAAAACCAACTCTCTACGGATGAGGTGACAAACTCGTCAACTGCTGCTCATCATGATCCTCCTCGTGCTAATAATTCCGAACAGAAAACTTCGTCACACTTGGAATTGAAGGGAACCAACATGATCCTAAGAAAGCCTTCATACCCTTTCAGTACTAGATCAGAAGATCATGAAATTGTGGTTCGTTCCAAGGGAAAAATGGGTAGTTCGGAAGATGTTCAACAACAGCTTCAGCTTCCTTTCTTTCTCGAAGAACCAGTATTAGCAAGTGACAATTTAGCAGGTCATACAAATGGCTGTGGAGAAGTTGAGGAGTTGGACTTGGAGCTCCGCTTAGGATCCGAGCCACCCGAGAGTCCGAGACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

187

Amino Acids

21.02

Weight (kDa)

6.06

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 464
AciI CCGC 1 cut(s) 523
AclWI GGATC 5 cut(s) 179, 242, 310, 525, 538
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 3 cut(s) 94, 182, 346
AgsI TTSAA 2 cut(s) 301, 413
AluBI AGCT 4 cut(s) 128, 421, 427, 520
AluI AGCT 4 cut(s) 128, 421, 427, 520
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 5 cut(s) 179, 242, 310, 525, 538
Ama87I CYCGRG 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 236
Asp700I GAANNNNTTC 2 cut(s) 328, 408
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 42
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BamHI GGATCC 1 cut(s) 530
BanII GRGCYC 2 cut(s) 169, 522
BauI CACGAG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmcAI AGTACT 2 cut(s) 182, 346
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 307, 532
BmrFI CCNGG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 243, 518
BseXI GCAGC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 169, 522
BspACI CCGC 1 cut(s) 523
BspHI TCATGA 2 cut(s) 244, 361
BspLI GGNNCC 2 cut(s) 307, 532
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 5 cut(s) 179, 242, 310, 525, 538
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 381
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 75, 104
BstDEI CTNAG 2 cut(s) 320, 526
BstF5I GGATG 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 547
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 2 cut(s) 75, 104
CciI TCATGA 2 cut(s) 244, 361
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 93, 181, 345
CviAII CATG 4 cut(s) 142, 245, 313, 362
CviJI RGCY 9 cut(s) 111, 128, 167, 328, 421, 427, 489, 520, 538
CviKI_1 RGCY 9 cut(s) 111, 128, 167, 328, 421, 427, 489, 520, 538
CviQI GTAC 3 cut(s) 93, 181, 345
DdeI CTNAG 2 cut(s) 320, 526
DrdI GACNNNNNNGTC 1 cut(s) 226
DseDI GACNNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 381
Eco24I GRGCYC 2 cut(s) 169, 522
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 169, 522
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 4 cut(s) 145, 248, 316, 365
FaiI YATR 6 cut(s) 143, 246, 314, 334, 363, 480
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 313, 345
FaqI GGGAC 1 cut(s) 150
FatI CATG 4 cut(s) 141, 244, 312, 361
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 2 cut(s) 169, 522
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 237
HapII CCGG 1 cut(s) 169
Hin1II CATG 4 cut(s) 145, 248, 316, 365
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 2 cut(s) 10, 547
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 8 cut(s) 49, 176, 187, 271, 355, 403, 535, 552
Hpy188III TCNNGA 4 cut(s) 115, 245, 362, 440
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 106, 295, 339
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 102, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 320, 526
Hsp92II CATG 4 cut(s) 145, 248, 316, 365
LmnI GCTCC 2 cut(s) 517, 525
LpnPI CCDG 5 cut(s) 59, 103, 182, 459, 462
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 3 cut(s) 217, 285, 461
MboII GAAGA 5 cut(s) 168, 200, 368, 416, 455
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 2 cut(s) 169, 522
MluCI AATT 4 cut(s) 265, 296, 366, 466
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 72, 489
MnlI CCTC 6 cut(s) 55, 101, 208, 261, 264, 496
MroXI GAANNNNTTC 2 cut(s) 328, 408
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 1 cut(s) 169
NlaIII CATG 4 cut(s) 145, 248, 316, 365
NlaIV GGNNCC 2 cut(s) 307, 532
NmuCI GTSAC 3 cut(s) 217, 285, 461
PagI TCATGA 2 cut(s) 244, 361
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 328, 408
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 307, 532
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 3 cut(s) 94, 182, 346
RsaNI GTAC 3 cut(s) 93, 181, 345
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 2 cut(s) 182, 346
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 2 cut(s) 169, 522
SetI ASST 8 cut(s) 47, 98, 130, 219, 423, 429, 478, 522
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 4 cut(s) 265, 296, 366, 466
SsiI CCGC 1 cut(s) 523
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 5 cut(s) 30, 116, 154, 163, 441
TasI AATT 4 cut(s) 265, 296, 366, 466
TatI WGTACW 2 cut(s) 180, 344
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 3 cut(s) 217, 285, 461
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 3 cut(s) 217, 285, 461
TspDTI ATGAA 4 cut(s) 140, 158, 321, 378
TspGWI ACGGA 2 cut(s) 7, 224
VpaK11BI GGWCC 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 328, 408
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 2 cut(s) 182, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.