RLG00000004675

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008865
Physical Location & Seq
Reverse (-)
61331843 .. 61332319
477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004675

Sequence Viewer

Length: 477 bp
ATGGGAGGAAAACGAACCGAGAACAAGAAAGGGAAGTTGGAGTTGGACAAACTAAGCAACTTACCAAGTGATGTTACAGAACAAATCTTATCGTATTTGCCAATCAGAGAAGCAGTGAGGACAAGTGTTTTATCAAGTAAATGGAGGCACAAATGGGCCACGCTTCGGCGTCTTGTGTTTGATGATAAAACAGCTATACGCTGCGTTATTGAAAGAGTTATCGATCATGTTCTGTTACTTCATGAAGGTCCCGTAGACGCTTTCAAGTTGTCTACAGACAAATGTATAAAGAGTGCTGAATTTGATAGATGGATTCTTTATCTATCAAGATTCTCTGTCAAAGAGTTCATACTGGAAAAAGGGACTTCCTCTCGCAATGACAAAATCTCTTCCCATTTGTTTTCTTATAAAGATTTGACTCAGTTCGCTAAAGCCCCCTTTGACATTCAAAGGCTTTGCTATGTTGAAGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

159

Amino Acids

18.32

Weight (kDa)

9.38

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 57 4.2e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccI GTMKAC 2 cut(s) 255, 272
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 4 cut(s) 212, 265, 449, 467
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 26, 52, 58
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AoxI GGCC 2 cut(s) 156, 470
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 156, 248, 470
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 156, 248, 470
BmiI GGNNCC 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 2 cut(s) 158, 472
BshVI ATCGAT 1 cut(s) 222
BslFI GGGAC 2 cut(s) 234, 376
BslI CCNNNNNNNGG 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 234, 376
BsnI GGCC 2 cut(s) 158, 472
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 2 cut(s) 158, 472
BspCNI CTCAG 1 cut(s) 433
BspDI ATCGAT 1 cut(s) 222
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 357
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 53, 420
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 2 cut(s) 158, 472
BsuTUI ATCGAT 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 3 cut(s) 156, 248, 470
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 2 cut(s) 158, 266
CviAII CATG 2 cut(s) 227, 242
CviJI RGCY 5 cut(s) 158, 194, 434, 454, 472
CviKI_1 RGCY 5 cut(s) 158, 194, 434, 454, 472
DdeI CTNAG 2 cut(s) 53, 420
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 2 cut(s) 248, 470
FaeI CATG 2 cut(s) 230, 245
FaiI YATR 7 cut(s) 197, 228, 243, 287, 350, 408, 462
FaqI GGGAC 2 cut(s) 234, 376
FatI CATG 2 cut(s) 226, 241
FblI GTMKAC 2 cut(s) 255, 272
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 158, 472
HgaI GACGC 2 cut(s) 158, 266
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 2 cut(s) 230, 245
HinfI GANTC 3 cut(s) 313, 330, 418
Hpy166II GTNNAC 2 cut(s) 256, 273
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 242, 327
Hpy8I GTNNAC 2 cut(s) 256, 273
HpyAV CCTTC 2 cut(s) 239, 461
HpyF3I CTNAG 2 cut(s) 53, 420
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 230, 245
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 1 cut(s) 338
Lsp1109I GCAGC 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 73, 234
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 381
MluCI AATT 1 cut(s) 299
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 2 cut(s) 18, 24
MnlI CCTC 3 cut(s) 111, 138, 379
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 230, 245
NlaIV GGNNCC 1 cut(s) 250
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 2 cut(s) 313, 330
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 3 cut(s) 156, 248, 470
PspPPI RGGWCCY 1 cut(s) 248
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 3 cut(s) 156, 248, 470
SchI GAGTC 1 cut(s) 412
SetI ASST 2 cut(s) 196, 250
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 248
Sse9I AATT 1 cut(s) 299
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 299
TfiI GAWTC 2 cut(s) 313, 330
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 230, 258, 337
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 255, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.