Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

30494414 .. 30501634

Gene Structure 7221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGATCAGTCGGACAAATTAAGCAACCTACCAACTGGTGTTACACACCAGATTTTGTCATACTTACCTATCAAACAGGCAGTGAGGACAAGTATTTTATCGAGTGACTGGAGGTACAAATGGACTCAGCTTCCATGTCTTGTGCTTGATGATAAAAGTGGATATCCAATTGCAAAGGTTGTGGATCATGTGCTGTTACTTCATAGTGGCCGCATTGACACTTTCAAGCTTTCTACTTTTAACTATCTAGCCCATATGGATATAGATAAATGGATTGCTCATCTATCAAGAAACAATGTCAAAGTGTTCGTACTGAAAGTATGGGAGCAGTCTCCCTACAATGTGTTTTCCGGCTTCTTTTCTTTTAAAGATTTGACTCATTTAGAGTTATGCAATTGTTTGCTTAAACCTCCAACGACATTCGAAGGCTTCAGGATGTTGAAGAGCCTTCATTTTCAAGGAGTTAATGTGTCTGGATATGTGTTGGGGAAACTAATTGCTTGCTGTCCTCGGCTTGAGAGAATAATTCTATGTGACTTACGGTTACAGGGTATCACTGATGTTACTATTGATGCACCAAGCATCCAGTTCCTTAAAGTTCAAGGCAGTTTTGAGGATGTTCTACTGACGAATACCTTCAATCTTGTTGATGTTTCAATTGACTGGAAACAAGGTTCTAGGATCAGTTCTGGCAAATTGCTCAGATATTTTTTTGAACTGCCTTGTATTCAAAGACTCACACTTGAGGACAGCTTTTTAGAGGTACGAAAAGAAGTGGAGACTAATGATGGAGAAGCCACCTATTGTTCAAGTGACGCACAGAATTGGGAAGTCACCCGACTGCGACGAGTGAAAGTAACCGGCTTCTCTGTTGTCAAAGCAGAAGTAGACTTCCTCGAATTTCTGTTATTAACCTCACCTGGTCTTCAAGAACTAGAAATTTCATTTTGTCAAGATGTGGAAGAAATGGCCTTTTCTTGGCTAGATAACAACCTGAAGACTTGTGCATTCACCCAACTGCGAGTTGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCCGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTACTTCACAAATGCTTGAGAGCATGGTTCTTCAACCTGCTTTTGTCGAAGCTTATTGGGAATTATTGGATATGCTGCTGAATGACAAAGTCGAAAGTCTGGAGGACGTTATTCTAGCTCTCGGTGATGACATTATAGTTTCTAGTGCTGCATTGACACTCAACTTTAGCTATCGTTCTGGGGTTACGTACAGTGTCAAAGTGGAGCTGAGGGAGATGTTAGAAATATCATCCAAGCATTGTCGCGAGGAGGCAGAAGAGGGTATGGAGGAGGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

456

Amino Acids

51.98

Weight (kDa)

5.12

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	67 - 202	2.9e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	88 - 217	1.4e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1135
AccI	GTMKAC	1 cut(s)	888
AccII	CGCG	1 cut(s)	1335
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	3 cut(s)	12, 192, 689
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	899, 939
AcuI	CTGAAG	2 cut(s)	415, 1016
AfaI	GTAC	5 cut(s)	116, 312, 765, 1093, 1280
AfiI	CCNNNNNNNGG	1 cut(s)	978
AjnI	CCWGG	1 cut(s)	919
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	7 cut(s)	130, 229, 753, 1142, 1208, 1260, 1297
AluI	AGCT	7 cut(s)	130, 229, 753, 1142, 1208, 1260, 1297
Alw26I	GTCTC	2 cut(s)	336, 773
AlwI	GGATC	3 cut(s)	12, 192, 689
AoxI	GGCC	2 cut(s)	208, 969
ApeKI	GCWGC	2 cut(s)	1165, 1238
ApoI	RAATTY	2 cut(s)	899, 939
Asp700I	GAANNNNTTC	1 cut(s)	635
AsuHPI	GGTGA	4 cut(s)	826, 909, 1003, 1226
AsuII	TTCGAA	1 cut(s)	423
BbsI	GAAGAC	2 cut(s)	917, 1004
BbvCI	CCTCAGC	1 cut(s)	1298
BbvI	GCAGC	2 cut(s)	1152, 1225
BccI	CCATC	1 cut(s)	782
BciT130I	CCWGG	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	336, 773
BfaI	CTAG	6 cut(s)	248, 678, 935, 983, 1205, 1233
BfuAI	ACCTGC	1 cut(s)	1135
BisI	GCNGC	3 cut(s)	211, 1166, 1239
BlsI	GCNGC	3 cut(s)	212, 1167, 1240
BmcAI	AGTACT	1 cut(s)	1093
Bme1390I	CCNGG	1 cut(s)	921
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	562, 591
BpiI	GAAGAC	2 cut(s)	917, 1004
BpmI	CTGGAG	2 cut(s)	130, 1211
Bpu10I	CCTNAGC	1 cut(s)	1298
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	3 cut(s)	536, 764, 1127
BsaAI	YACGTR	1 cut(s)	1278
BsaJI	CCNNGG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	978
Bse118I	RCCGGY	2 cut(s)	860, 1037
Bse1I	ACTGG	4 cut(s)	40, 113, 586, 668
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	4 cut(s)	441, 582, 622, 1319
BseLI	CCNNNNNNNGG	1 cut(s)	978
BseMII	CTCAG	3 cut(s)	140, 715, 1289
BseNI	ACTGG	4 cut(s)	40, 113, 586, 668
BseRI	GAGGAG	1 cut(s)	1352
BseXI	GCAGC	2 cut(s)	1152, 1225
Bsh1236I	CGCG	1 cut(s)	1335
BshFI	GGCC	2 cut(s)	210, 971
BsiSI	CCGG	3 cut(s)	351, 861, 1038
BslI	CCNNNNNNNGG	1 cut(s)	978
BsmAI	GTCTC	2 cut(s)	336, 773
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	2 cut(s)	210, 971
Bsp119I	TTCGAA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	4, 184, 681
Bsp68I	TCGCGA	1 cut(s)	1335
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	210, 971
BspCNI	CTCAG	3 cut(s)	139, 714, 1290
BspFNI	CGCG	1 cut(s)	1335
BspMI	ACCTGC	1 cut(s)	1135
BspPI	GGATC	3 cut(s)	12, 192, 689
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	860, 1037
BsrI	ACTGG	4 cut(s)	40, 113, 586, 668
BssAI	RCCGGY	2 cut(s)	860, 1037
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	3 cut(s)	4, 184, 681
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	2 cut(s)	543, 1283
Bst6I	CTCTTC	2 cut(s)	437, 1341
BstBAI	YACGTR	1 cut(s)	1278
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	502, 1366
BstDEI	CTNAG	3 cut(s)	126, 701, 1298
BstF5I	GGATG	4 cut(s)	441, 582, 622, 1319
BstFNI	CGCG	1 cut(s)	1335
BstKTI	GATC	3 cut(s)	7, 187, 684
BstMAI	GTCTC	2 cut(s)	336, 773
BstMBI	GATC	3 cut(s)	4, 184, 681
BstNI	CCWGG	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	919
BstSNI	TACGTA	1 cut(s)	1278
BstUI	CGCG	1 cut(s)	1335
BstV1I	GCAGC	2 cut(s)	1152, 1225
BstV2I	GAAGAC	2 cut(s)	917, 1004
BsuRI	GGCC	2 cut(s)	210, 971
BtsCI	GGATG	4 cut(s)	441, 582, 622, 1319
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 555, 1288
BtuMI	TCGCGA	1 cut(s)	1335
BveI	ACCTGC	1 cut(s)	1135
Cac8I	GCNNGC	2 cut(s)	502, 1366
Cfr10I	RCCGGY	2 cut(s)	860, 1037
CseI	GACGC	1 cut(s)	824
CsiI	ACCWGGT	1 cut(s)	919
Csp6I	GTAC	5 cut(s)	115, 311, 764, 1092, 1279
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	3 cut(s)	135, 188, 1114
CviQI	GTAC	5 cut(s)	115, 311, 764, 1092, 1279
DdeI	CTNAG	3 cut(s)	126, 701, 1298
DpnI	GATC	3 cut(s)	6, 186, 683
DpnII	GATC	3 cut(s)	4, 184, 681
DraI	TTTAAA	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	437, 1341
EarI	CTCTTC	2 cut(s)	437, 1341
Eco105I	TACGTA	1 cut(s)	1278
Eco32I	GATATC	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	415, 1016
EcoRII	CCWGG	1 cut(s)	919
EcoRV	GATATC	1 cut(s)	164
FaeI	CATG	3 cut(s)	138, 191, 1117
FatI	CATG	3 cut(s)	134, 187, 1113
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	3 cut(s)	211, 1166, 1239
FokI	GGATG	4 cut(s)	448, 569, 629, 1306
Fsp4HI	GCNGC	3 cut(s)	211, 1166, 1239
FspBI	CTAG	6 cut(s)	248, 678, 935, 983, 1205, 1233
GluI	GCNGC	3 cut(s)	211, 1166, 1239
GsuI	CTGGAG	2 cut(s)	130, 1211
HaeIII	GGCC	2 cut(s)	210, 971
HapII	CCGG	3 cut(s)	351, 861, 1038
HgaI	GACGC	1 cut(s)	824
Hin1II	CATG	3 cut(s)	138, 191, 1117
HindIII	AAGCTT	2 cut(s)	227, 1140
HinfI	GANTC	3 cut(s)	124, 376, 735
HpaII	CCGG	3 cut(s)	351, 861, 1038
HphI	GGTGA	4 cut(s)	826, 909, 1003, 1226
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	3 cut(s)	13, 704, 1076
Hpy188III	TCNNGA	7 cut(s)	288, 433, 474, 929, 953, 1190, 1334
Hpy8I	GTNNAC	1 cut(s)	889
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	3 cut(s)	419, 458, 646
HpyCH4III	ACNGT	2 cut(s)	543, 1283
HpyCH4IV	ACGT	2 cut(s)	1197, 1277
HpyCH4V	TGCA	5 cut(s)	173, 393, 575, 1007, 1241
HpyF3I	CTNAG	3 cut(s)	126, 701, 1298
HpySE526I	ACGT	2 cut(s)	1197, 1277
Hsp92II	CATG	3 cut(s)	138, 191, 1117
Kzo9I	GATC	3 cut(s)	4, 184, 681
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	2 cut(s)	325, 1294
Lsp1109I	GCAGC	2 cut(s)	1152, 1225
LweI	GCATC	2 cut(s)	562, 591
MabI	ACCWGGT	1 cut(s)	919
MaeI	CTAG	6 cut(s)	248, 678, 935, 983, 1205, 1233
MaeII	ACGT	2 cut(s)	1197, 1277
MalI	GATC	3 cut(s)	6, 186, 683
MboI	GATC	3 cut(s)	4, 184, 681
MboII	GAAGA	6 cut(s)	454, 917, 974, 1009, 1112, 1358
MfeI	CAATTG	3 cut(s)	168, 394, 657
MlyI	GAGTC	3 cut(s)	118, 370, 729
MmeI	TCCRAC	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	7 cut(s)	20, 240, 366, 405, 465, 594, 911
MspI	CCGG	3 cut(s)	351, 861, 1038
MspR9I	CCNGG	1 cut(s)	921
MunI	CAATTG	3 cut(s)	168, 394, 657
Mva1269I	GAATGC	1 cut(s)	1007
MvaI	CCWGG	1 cut(s)	921
MvnI	CGCG	1 cut(s)	1335
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	3 cut(s)	4, 184, 681
NlaIII	CATG	3 cut(s)	138, 191, 1117
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	4 cut(s)	104, 533, 812, 832
NruI	TCGCGA	1 cut(s)	1335
NspV	TTCGAA	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	635
PflFI	GACNNNGTC	1 cut(s)	1178
PkrI	GCNGC	3 cut(s)	212, 1167, 1240
PleI	GAGTC	3 cut(s)	118, 370, 729
PpsI	GAGTC	3 cut(s)	118, 370, 729
Ppu21I	YACGTR	1 cut(s)	1278
Psp6I	CCWGG	1 cut(s)	919
PspGI	CCWGG	1 cut(s)	919
PsyI	GACNNNGTC	1 cut(s)	1178
RruI	TCGCGA	1 cut(s)	1335
RsaI	GTAC	5 cut(s)	116, 312, 765, 1093, 1280
RsaNI	GTAC	5 cut(s)	115, 311, 764, 1092, 1279
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	7 cut(s)	20, 240, 366, 405, 465, 594, 911
SatI	GCNGC	3 cut(s)	211, 1166, 1239
Sau3AI	GATC	3 cut(s)	4, 184, 681
ScaI	AGTACT	1 cut(s)	1093
SchI	GAGTC	3 cut(s)	118, 370, 729
ScrFI	CCNGG	1 cut(s)	921
SexAI	ACCWGGT	1 cut(s)	919
SfaNI	GCATC	2 cut(s)	562, 591
SfuI	TTCGAA	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	515, 743, 1106
SmoI	CTYRAG	3 cut(s)	515, 743, 1106
SnaBI	TACGTA	1 cut(s)	1278
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	6 cut(s)	248, 678, 935, 983, 1205, 1233
StyD4I	CCNGG	1 cut(s)	919
TaaI	ACNGT	2 cut(s)	543, 1283
TaiI	ACGT	2 cut(s)	1200, 1280
TaqI	TCGA	5 cut(s)	101, 423, 897, 1137, 1182
TatI	WGTACW	1 cut(s)	1091
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	7 cut(s)	20, 240, 366, 405, 465, 594, 911
Tru9I	TTAA	7 cut(s)	20, 240, 366, 405, 465, 594, 911
TscAI	CASTG	3 cut(s)	87, 562, 1288
TseFI	GTSAC	4 cut(s)	104, 533, 812, 832
TseI	GCWGC	2 cut(s)	1165, 1238
Tsp45I	GTSAC	4 cut(s)	104, 533, 812, 832
TspDTI	ATGAA	4 cut(s)	191, 440, 933, 1060
TspRI	CASTG	3 cut(s)	87, 562, 1288
Tth111I	GACNNNGTC	1 cut(s)	1178
XapI	RAATTY	2 cut(s)	899, 939
XmiI	GTMKAC	1 cut(s)	888
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	6 cut(s)	248, 678, 935, 983, 1205, 1233
ZrmI	AGTACT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.