Rorug06G0492000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008865
Physical Location & Seq
Reverse (-)
60992623 .. 60995095
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0492000.1

Sequence Viewer

Length: 504 bp
ATGGTGCTCTTCGCGCTACAGATAACGGCCGAGCTCGAAAACCTCACTAATCTTCAGCCCGGGGGAGGCTGCGATGATCCAGAATTTACCTATCTCTTCAAGTTGAAATGTCAGAGCTGTGGTGAGCCGACTCAGAAGGAAACTGCTTTGAGCTTGAGCGAGTCTGTTCCTCTTCCGGTGGGCAAGGGAACCACTAATCTCATTCAGAAGTGCAAGTTTTGTGGCAGGGAAGGAACCGTAACAATGATGCCTGGTCGTGGTCGACCATTGACTGAGGAGTTAAGTGAAGCAGGGAAGTTTGCCCCCTTGATGGTGTTCGAATGCAGGGGTTATGAGCCTGTGGATTATGTCTTTGGTGGCGGGTGGAAAGTTCAATCTTTGGCTGGGACAACATTTGACGATGTTGACTTGTCAGAGGGGGAGTTTGCTGAATATGATGAGAAGGGAGAGTGCCCAGTTATGATCTCCAAGCCCTCTTCTACTTTTGTCGTGCTGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

167

Amino Acids

18.2

Weight (kDa)

4.57

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 5 - 162 5.6e-51 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 65, 257, 310
AgsI TTSAA 3 cut(s) 100, 106, 374
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 34, 117, 153
AluI AGCT 3 cut(s) 34, 117, 153
Alw21I GWGCWC 2 cut(s) 9, 36
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 9, 36
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 60, 61
BfaI CTAG 1 cut(s) 502
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 60, 61, 252
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 190, 235
BmrFI CCNGG 3 cut(s) 60, 61, 252
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 60, 61
BsaJI CCNNGG 2 cut(s) 59, 60
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 257, 310
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 59, 60
BseLI CCNNNNNNNGG 3 cut(s) 65, 257, 310
BseMII CTCAG 2 cut(s) 146, 264
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 455
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 9, 36
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 60, 176
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 3 cut(s) 65, 257, 310
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 9, 36, 455
Bsp143I GATC 2 cut(s) 76, 462
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 145, 265
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 190, 235
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 59, 60
BssMI GATC 2 cut(s) 76, 462
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 4 cut(s) 14, 101, 177, 481
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 132, 273
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 79, 465
BstMBI GATC 2 cut(s) 76, 462
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 58, 59, 250
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 87
CfoI GCGC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
DdeI CTNAG 2 cut(s) 132, 273
DpnI GATC 2 cut(s) 78, 464
DpnII GATC 2 cut(s) 76, 462
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 4 cut(s) 14, 101, 177, 481
EarI CTCTTC 4 cut(s) 14, 101, 177, 481
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 4 cut(s) 333, 348, 435, 461
FaqI GGGAC 1 cut(s) 400
FauI CCCGC 1 cut(s) 353
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 502
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 60, 176
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 2 cut(s) 263, 406
HindII GTYRAC 2 cut(s) 263, 406
HinfI GANTC 2 cut(s) 130, 161
HpaII CCGG 2 cut(s) 60, 176
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 263, 406
Hpy188I TCNGA 4 cut(s) 114, 135, 207, 415
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 263, 406
HpyAV CCTTC 3 cut(s) 130, 224, 436
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 213, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 132, 273
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 76, 462
LguI GCTCTTC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 78, 464
MboI GATC 2 cut(s) 76, 462
MboII GAAGA 4 cut(s) 44, 88, 164, 468
MhlI GDGCHC 3 cut(s) 9, 36, 455
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 124, 170
MnlI CCTC 6 cut(s) 53, 59, 180, 268, 409, 484
MseI TTAA 1 cut(s) 281
MspI CCGG 2 cut(s) 60, 176
MspR9I CCNGG 3 cut(s) 60, 61, 252
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 60, 61
NdeII GATC 2 cut(s) 76, 462
NlaIV GGNNCC 2 cut(s) 190, 235
NmeAIII GCCGAG 1 cut(s) 55
NspV TTCGAA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 190, 235
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 76, 462
SchI GAGTC 2 cut(s) 124, 170
ScrFI CCNGG 3 cut(s) 60, 61, 252
SduI GDGCHC 3 cut(s) 9, 36, 455
SetI ASST 5 cut(s) 36, 45, 92, 119, 155
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 502
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 58, 59, 250
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 36, 262, 318
TasI AATT 1 cut(s) 83
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseI GCWGC 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.