Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008865

Physical Location & Seq

Genomic Coordinates Forward (+)

7505197 .. 7506221

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCTGTAAGTTATAGCAAATTGCTCCAGTATTTTCTTCGCCTGCCTCGTATTGAAAGGCTCACAATTGATGGTTGCCTTTTAGAGGTTCGCAAAAAGAATAAGGCTGCTGCTGGAGAACAAGCTACCAATTGGTTAAATAACAATCGGCTTTGGGAATTCACTCAACTGCGACGTTTGAAAGTAACCGACCTCTATGGTGTTACTGGAGAAGTACACTTACTTGAATATCTGTTTTTAAGCTCCCCTGCTCTTCAAGAACTAGAAATTTCGTTTAGAGACAACAAGAAAATGGGGATGGGATTAGATGCTGCTGCTGTGGGAGATTATAGCAATCGAAATTGCACATTCAACCAACTGAGAGTTATAAAAGTAACCAACTTTCGTGGTGTCAAAGCTGAAGCAGGTTTAATCGGATTTCTGCTTTCAAGTTCACCTATGCTCAAGACGATGACTCTTCAGCCTGCTTCTCCTGAAGTTTCTTGGGAAGTACTTAAGGTGGTGACTGAGTTCAAGCGAGATTCAGGGCATGCTGAGTTAAAGTTGTTGGACCCATGCATTAAGTCCTTTGAGAGAGTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

195

Amino Acids

22.13

Weight (kDa)

9.28

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g09550 FvH4_5g10110 FvH4_5g10110 FvH4_5g10120 FvH4_5g10120 FvH4_6g18740
rosa_chinensis	RchiOBHm_Chr3g0473701
rosa_laevigata	RLG00000004674 RLG00000004675 RLG00000023990 RLG00000023992
rosa_multiflora	Rmu_co8411403.1_g000001 Rmu_sc0003069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266170 Rroxscaffold_6G00407920 Rroxscaffold_6G00407930
rosa_rugosa	Rorug03G0134800 Rorug06G0492000
rosa_samantha	Rh3BG213600 Rh7CG100200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	371, 586
Acc36I	ACCTGC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	161, 270
AcuI	CTGAAG	3 cut(s)	423, 446, 498
AfaI	GTAC	2 cut(s)	219, 495
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	59, 184, 230, 260, 355, 432, 517
AluBI	AGCT	3 cut(s)	128, 246, 401
AluI	AGCT	3 cut(s)	128, 246, 401
Alw26I	GTCTC	1 cut(s)	276
ApeKI	GCWGC	4 cut(s)	110, 113, 314, 317
ApoI	RAATTY	2 cut(s)	161, 270
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	429, 517
AvaII	GGWCC	1 cut(s)	553
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbvI	GCAGC	4 cut(s)	97, 100, 301, 304
BccI	CCATC	2 cut(s)	68, 295
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	398
BisI	GCNGC	4 cut(s)	111, 114, 315, 318
BlsI	GCNGC	4 cut(s)	112, 115, 316, 319
BmcAI	AGTACT	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	1 cut(s)	555
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	3 cut(s)	14, 138, 231
BpuEI	CTTGAG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	31, 214
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	353, 501, 528
BseNI	ACTGG	2 cut(s)	31, 214
BseXI	GCAGC	4 cut(s)	97, 100, 301, 304
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	354, 502, 529
BspLI	GGNNCC	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	398
BspQI	GCTCTTC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	31, 214
Bst6I	CTCTTC	2 cut(s)	261, 465
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	47, 468, 534
BstDEI	CTNAG	3 cut(s)	362, 510, 537
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	97, 100, 301, 304
BtsCI	GGATG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	47, 468, 534
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	218, 494
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	2 cut(s)	533, 558
CviJI	RGCY	8 cut(s)	5, 64, 110, 128, 154, 246, 401, 466
CviKI_1	RGCY	8 cut(s)	5, 64, 110, 128, 154, 246, 401, 466
CviQI	GTAC	2 cut(s)	218, 494
DdeI	CTNAG	3 cut(s)	362, 510, 537
Eam1104I	CTCTTC	2 cut(s)	261, 465
EarI	CTCTTC	2 cut(s)	261, 465
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	3 cut(s)	423, 446, 498
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	563
FaeI	CATG	2 cut(s)	536, 561
FaiI	YATR	8 cut(s)	18, 201, 333, 371, 443, 534, 559, 586
FatI	CATG	2 cut(s)	532, 557
Fnu4HI	GCNGC	4 cut(s)	111, 114, 315, 318
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	4 cut(s)	111, 114, 315, 318
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	111, 114, 315, 318
GsuI	CTGGAG	3 cut(s)	14, 138, 231
Hin1II	CATG	2 cut(s)	536, 561
HinfI	GANTC	3 cut(s)	457, 524, 579
HphI	GGTGA	2 cut(s)	429, 517
Hpy166II	GTNNAC	2 cut(s)	220, 437
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	260, 448, 476
Hpy8I	GTNNAC	2 cut(s)	220, 437
Hpy99I	CGWCG	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	348, 561
HpyF3I	CTNAG	3 cut(s)	362, 510, 537
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	536, 561
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	33, 251
LpnPI	CCDG	9 cut(s)	44, 59, 102, 195, 264, 393, 480, 489, 513
Lsp1109I	GCAGC	4 cut(s)	97, 100, 301, 304
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	4 cut(s)	187, 205, 376, 505
MboII	GAAGA	3 cut(s)	32, 248, 452
MfeI	CAATTG	2 cut(s)	69, 133
MluCI	AATT	6 cut(s)	23, 69, 133, 161, 270, 343
MlyI	GAGTC	2 cut(s)	451, 588
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	3 cut(s)	60, 82, 206
Mph1103I	ATGCAT	1 cut(s)	563
MseI	TTAA	6 cut(s)	140, 242, 413, 498, 542, 564
MspCI	CTTAAG	1 cut(s)	497
MunI	CAATTG	2 cut(s)	69, 133
NlaIII	CATG	2 cut(s)	536, 561
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	563
NspI	RCATGY	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	4 cut(s)	112, 115, 316, 319
PleI	GAGTC	2 cut(s)	451, 587
PpsI	GAGTC	2 cut(s)	451, 587
PsiI	TTATAA	2 cut(s)	371, 586
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	553
RsaI	GTAC	2 cut(s)	219, 495
RsaNI	GTAC	2 cut(s)	218, 494
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	6 cut(s)	140, 242, 413, 498, 542, 564
SatI	GCNGC	4 cut(s)	111, 114, 315, 318
Sau96I	GGNCC	1 cut(s)	553
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	2 cut(s)	451, 588
SetI	ASST	9 cut(s)	93, 130, 181, 198, 248, 403, 412, 442, 504
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	446, 497
SmoI	CTYRAG	2 cut(s)	446, 497
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	6 cut(s)	23, 69, 133, 161, 270, 343
SspMI	CTAG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	340
TasI	AATT	6 cut(s)	23, 69, 133, 161, 270, 343
TatI	WGTACW	2 cut(s)	217, 493
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	6 cut(s)	140, 242, 413, 498, 542, 564
Tru9I	TTAA	6 cut(s)	140, 242, 413, 498, 542, 564
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	4 cut(s)	110, 113, 314, 317
Tsp45I	GTSAC	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	2 cut(s)	161, 270
XceI	RCATGY	1 cut(s)	536
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.